mRNA_9091 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166414
Unique NamemRNA_9091
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: A0A835YS51_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS51_9STRA)

HSP 1 Score: 512 bits (1318), Expect = 2.530e-183
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 
Query:    1 MAEVQNRMGECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRMTRKPL 777
            MAEVQNRMGECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRMTRKPL
Sbjct:    1 MAEVQNRMGECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRMTRKPL 259
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BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: D7FQL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL8_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 3.540e-106
Identity = 166/252 (65.87%), Postives = 202/252 (80.16%), Query Frame = 1 
Query:   13 QNRMGECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRMTR 768
            + R+G+ + +RAEL GRL  L+ Q R  + +L   +Y  ++EK R+K+I+  TT MAV DL+KYWTALDKAL+R+H MKIA+INKIIRELW +TY G DIDMIEIVSG+D  S +A RSYNYRV MRK    LDMKGRCSAGQRVLAS+VIRLALAETFC++CGILALDEPTTNLD  NK GLA ALA+II+ RS+Q+NFQLI ITHDEEFV TMRT+LG+  GF+MPE+YW +SRE+     G+FYSR+ R
Sbjct:  194 EERLGKTQ-TRAELKGRLHGLKGQIRGYEAKLNSDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEMS--RGKFYSRIDR 442
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BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: A0A7S3Y9Z4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Z4_HETAK)

HSP 1 Score: 298 bits (763), Expect = 1.090e-99
Identity = 149/197 (75.63%), Postives = 170/197 (86.29%), Query Frame = 1 
Query:  178 MAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRMTR 768
            MAV DLEKYWTALDKALM++H MKI +INKIIRELWQITY+G DI+ IEIVSGE+G SNRAGRSYNYRV M KG   LDMKGRCSAGQRVL+SIVIRLALAETFC+NCGILALDEPTTNLD +NK GLA ALA+IIA RS+Q+NFQL+ ITHDEEFV  MR +L S AGF+MPEY++ VSRE+    +G+FYSR+ R
Sbjct:    1 MAVQDLEKYWTALDKALMQFHRMKIEDINKIIRELWQITYQGNDIESIEIVSGEEGTSNRAGRSYNYRVCMTKGDAHLDMKGRCSAGQRVLSSIVIRLALAETFCLNCGILALDEPTTNLDSDNKRGLANALAKIIAARSKQTNFQLLAITHDEEFVAMMRNELASHAGFSMPEYFYRVSREEL--RAGRFYSRIDR 195
[Close]
BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: A0A7S2B1T5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1T5_9STRA)

HSP 1 Score: 296 bits (757), Expect = 1.560e-96
Identity = 153/259 (59.07%), Postives = 196/259 (75.68%), Query Frame = 1 
Query:    1 MAEVQNRMGECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRT---QLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRMTR 768
            +++++++    ++ R++  G++++ + Q ++++ RLK   +  + E+ R K ++VETT MAV DL+KYW ALDKAL+RYH  KI EIN+IIRELW  TY G DID IEIVSGE+GAS RA RSYNYRVAMRKG T LDMKGRCSAGQRVLA IVIRLALAETFC+ CGIL LDEPTTNLD  NK GLA ALA II+ R++Q NFQ+IVITHD +FV  MR+   QLG+   FN+PEYYW + R Q    +GQ+ S++ R
Sbjct:   94 ISDLESKKLALQQERSKNDGKMSSTQQQLKEIRNRLKESHFRKIHERTRLKRVEVETTVMAVEDLDKYWIALDKALLRYHSHKIQEINRIIRELWSTTYMGQDIDSIEIVSGEEGASTRASRSYNYRVAMRKGDTTLDMKGRCSAGQRVLACIVIRLALAETFCLTCGILTLDEPTTNLDEYNKQGLASALADIISIRAKQRNFQVIVITHDPDFVNYMRSAFNQLGTQRAFNLPEYYWRIFRSQVA--TGQYVSQIER 350
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BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: A0A7R9WT19_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT19_9STRA)

HSP 1 Score: 287 bits (734), Expect = 4.600e-94
Identity = 151/254 (59.45%), Postives = 194/254 (76.38%), Query Frame = 1 
Query:    1 MAEVQNRMGECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRM 762
            + ++  +M +   S+A L GR + + +  R LK++LK   Y  V+E+ R  +I  ETT MAV D+EKY +ALD AL+++H +KIAEIN+IIR+LW++TYKG DI  IE+VSG+D  + RA RSYNYRV M KGST +DM+GRCSAGQRVLASIVIRLALAETFC+NCG +ALDEPT NLDF NK GLA ALA+I A RS QSNFQLI+ITHDE+FV  M+T+L S +GF MPE Y+ V RE+  G  G++YS++
Sbjct:   25 LGKLDKKMQKLSASQARLEGRRSEIVESIRSLKRKLKQPEYKNVEEEYRVSMIKHETTLMAVRDIEKYHSALDHALLQFHSIKIAEINQIIRDLWRLTYKGEDITTIELVSGQDSGA-RASRSYNYRVVMTKGSTRMDMRGRCSAGQRVLASIVIRLALAETFCVNCGCIALDEPTVNLDFNNKRGLAIALAQITADRSAQSNFQLIMITHDEDFVAMMKTELASQSGFTMPEKYFQVRREE--GADGKYYSKI 275
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BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: A0A7S2RPE9_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RPE9_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.110e-93
Identity = 147/235 (62.55%), Postives = 183/235 (77.87%), Query Frame = 1 
Query:   58 GRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRM 762
            G   A+R Q RDLK++L+   Y  + E+ R K+I+ ETT ++VADL+KY +ALDKAL+RYH +KI EINKIIRE+W +TYKG DI  IEIVSGE+ A  +  +SYNYRV M KG+T LDM+GRCSAGQRVLASIVIRLALAETFC+NCG + LDEPTTNLDF NK GLA ALA+IIA RS Q NFQL++ITHDE+FV  M+ +L +  GF+MPE Y+ VSR+Q     G +YS++
Sbjct:   19 GSKDAIRGQQRDLKRKLQTPEYDQIDERHRIKMIEYETTVISVADLDKYHSALDKALLRYHGIKIEEINKIIREVWTLTYKGEDISNIEIVSGEENA-RKTSKSYNYRVVMSKGNTELDMRGRCSAGQRVLASIVIRLALAETFCLNCGFMTLDEPTTNLDFANKRGLAIALAQIIATRSAQQNFQLVIITHDEDFVSMMKNELSTHTGFDMPERYFQVSRQQAT--DGHYYSKI 250
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BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: A0A7S2EEH2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEH2_TRICV)

HSP 1 Score: 281 bits (718), Expect = 1.600e-92
Identity = 143/214 (66.82%), Postives = 175/214 (81.78%), Query Frame = 1 
Query:  121 YAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRM 762
            Y  + E+ R+K+I+ ETT +AVADLEKY +ALDKAL+RYH MKIA+INKIIRELW +TYKG DI  IE+ S +D A +RA RSYNYRV M KGST LDM+GRCSAGQRVLASIVI+LALAETFC+NCG++ LDEPTTNLD+ NK GLA ALA+IIA R+ Q+NFQL+VITHDEEFV  M+ +L +  GF+MPE Y+ VSRE+  G  G+ YS++
Sbjct:    5 YNDIDERHRQKMIEFETTNIAVADLEKYHSALDKALLRYHGMKIADINKIIRELWTLTYKGEDITNIELASNQD-AGSRAARSYNYRVVMTKGSTPLDMRGRCSAGQRVLASIVIKLALAETFCLNCGVMCLDEPTTNLDYANKRGLAIALAQIIATRAAQANFQLVVITHDEEFVAMMKNELTAHTGFDMPERYFQVSREE--GSDGKHYSKI 215
[Close]
BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: A0A7R9W3X1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3X1_9STRA)

HSP 1 Score: 288 bits (736), Expect = 3.330e-91
Identity = 150/248 (60.48%), Postives = 193/248 (77.82%), Query Frame = 1 
Query:   19 RMGECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRM 762
            R+ + + ++A+  GR    ++Q R LK++LK   Y  + E+ R+K+I+ ETT +AV DLEKY +ALDKAL+RYH MKIA+INKIIRELW +TYKG DI  I++ SG++  S RA RSYNYRV M KG   LDM+GRCSAGQRVLASIVIRLALAETFC+NCG++ LDEPTTNLD+ NK GLA ALA+IIA R+ Q+NFQL+VITHDEEFV  M+ +L + +GF+MPE Y+ VSRE+  G  G+ YS++
Sbjct:  273 RIQKQENTKAQCEGRRAEKKEQIRSLKRKLKTEEYKDIDERHRRKMIEYETTTIAVEDLEKYHSALDKALLRYHGMKIADINKIIRELWTLTYKGEDIANIKLESGQEKGS-RAARSYNYRVVMTKGGAELDMRGRCSAGQRVLASIVIRLALAETFCLNCGVMCLDEPTTNLDYANKRGLAVALAQIIANRASQTNFQLVVITHDEEFVTMMKNELSAHSGFSMPERYFQVSREE--GSDGKHYSKI 517
[Close]
BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: B8CAM3_THAPS (AAA_23 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAM3_THAPS)

HSP 1 Score: 292 bits (748), Expect = 2.880e-87
Identity = 152/245 (62.04%), Postives = 190/245 (77.55%), Query Frame = 1 
Query:   28 ECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRM 762
            E +E +A   G+   L +Q R LK++L    Y  V+E+ R K+I+ ETT + V DL+KY+ ALDKAL+RYH MKI +INKII+ELW +TYKG DI  I+I S +D A  RA RSYNYR+ M KG+T +DM+GRCSAGQRVLASIVIRLALAETFC+NCG++ALDEPTTNLD+ENK GLA ALA+IIA R+ QSNFQL+VITHDE+FV  M+ +L S  GFNMPE Y+ VSRE+  G  G+FYS++
Sbjct: 1154 ESQEMKAVAEGKRQMLAEQRRALKRKLNEPEYKDVEERHRVKMIEYETTNIVVGDLDKYYDALDKALLRYHGMKINDINKIIKELWALTYKGEDITNIQITSDQDKAG-RAARSYNYRIVMSKGNTTMDMRGRCSAGQRVLASIVIRLALAETFCLNCGVMALDEPTTNLDYENKRGLAIALAQIIASRAAQSNFQLVVITHDEDFVSMMKNELSSQTGFNMPERYYQVSREE--GHDGRFYSKI 1395
[Close]
BLAST of jgi.p|Trimin1|166414 vs. uniprot
Match: A0A7S4K6V4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6V4_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.130e-86
Identity = 148/248 (59.68%), Postives = 192/248 (77.42%), Query Frame = 1 
Query:   19 RMGECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRM 762
            R+ + + ++A+  GR    +DQ R LK++L+   Y  V E+ R+K+I+ ETT +AV DLEKY TALDKAL+RYH MKI +INKI+RELW +TYKG DI  I+++S +D  S +A +S+NYRV M KG+T LDM+GRCSAGQRVLASIVIRLALAETFC+NCG+L LDEPTTNLD+ NK GLA ALA+IIA R+ Q+NFQL+VITHDEEFV  M+ +L +  GF MP+ Y+ VSRE+  G  G+ YS++
Sbjct:  587 RIQKHENAKAQCEGRRAGKKDQIRSLKRKLQTPEYKDVDERHRRKMIEFETTLIAVKDLEKYHTALDKALLRYHGMKIQDINKIVRELWTLTYKGEDITNIKLMSDQDKGS-KAAKSHNYRVVMMKGTTELDMRGRCSAGQRVLASIVIRLALAETFCLNCGVLCLDEPTTNLDYANKRGLAIALAQIIATRASQTNFQLVVITHDEEFVTMMKNELSAHTGFTMPDRYFQVSREE--GSDGKHYSKI 831
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166414 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS51_9STRA2.530e-183100.00P-loop containing nucleoside triphosphate hydrolas... [more]
D7FQL8_ECTSI3.540e-10665.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3Y9Z4_HETAK1.090e-9975.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2B1T5_9STRA1.560e-9659.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9WT19_9STRA4.600e-9459.45Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2RPE9_9STRA1.110e-9362.55Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]
A0A7S2EEH2_TRICV1.600e-9266.82Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9W3X1_9STRA3.330e-9160.48Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8CAM3_THAPS2.880e-8762.04AAA_23 domain-containing protein n=1 Tax=Thalassio... [more]
A0A7S4K6V4_9STRA1.130e-8659.68Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:472719..477298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166414|e_gw1.44.95.1
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
KEGG ModuleM00291,M00292,M00295
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG koko:K10866
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
Preferred nameRAD50
DescriptionG-quadruplex DNA binding
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0419@1|root,KOG0962@2759|Eukaryota
Evalue5.81e-107
Seed ortholog2880.D7FQL8
Hectar predicted targeting categoryother localisation
TranscriptId166736
TrackFilteredModels1
ProteinId166414
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166414gene_9091Tribonema minus UTEX_B_3156 geneContig_44 472719..477298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166414Trimin1|166414|e_gw1.44.95.1Tribonema minus UTEX_B_3156 polypeptideContig_44 472719..477298 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9091_6exon_9091_6Tribonema minus UTEX_B_3156 exonContig_44 472719..472859 -
exon_9091_5exon_9091_5Tribonema minus UTEX_B_3156 exonContig_44 474297..474429 -
exon_9091_4exon_9091_4Tribonema minus UTEX_B_3156 exonContig_44 475101..475210 -
exon_9091_3exon_9091_3Tribonema minus UTEX_B_3156 exonContig_44 475686..475859 -
exon_9091_2exon_9091_2Tribonema minus UTEX_B_3156 exonContig_44 476177..476314 -
exon_9091_1exon_9091_1Tribonema minus UTEX_B_3156 exonContig_44 477215..477298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9091CDS_9091Tribonema minus UTEX_B_3156 CDSContig_44 477215..477298 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9091 ID=mRNA_9091|Name=jgi.p|Trimin1|166414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=780bp|location=Sequence derived from alignment at Contig_44:472719..477298- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGGTGCAGAACCGCATGGGGGAGTGCAAGGAGTCGCGCGCAGA
GCTTGGTGGCAGGCTGACAGCGCTCAGAGATCAGGGCCGGGACTTGAAGC
AGAGGCTCAAGGGCGGCTCTTACGCAGGAGTGCAGGAGAAGCGTCGCAAG
AAGCTCATTGACGTTGAGACCACCGCCATGGCCGTTGCGGACCTCGAGAA
GTACTGGACTGCGCTCGACAAGGCCCTGATGCGCTACCACCACATGAAGA
TTGCTGAGATCAACAAGATCATCCGCGAGCTGTGGCAGATCACCTACAAG
GGCGGCGACATTGACATGATTGAGATTGTGTCGGGCGAAGACGGTGCCTC
CAACAGGGCGGGACGCAGCTACAACTACCGCGTCGCGATGCGCAAGGGCT
CAACCATACTGGACATGAAGGGCCGCTGCAGTGCGGGTCAGAGGGTGCTC
GCGAGCATCGTCATCAGGCTGGCGCTGGCAGAGACATTCTGCATCAACTG
CGGCATCCTTGCACTGGATGAGCCCACGACCAACCTGGACTTTGAGAACA
AGGACGGCCTGGCCAAGGCACTCGCGCGCATCATTGCTCAGCGCAGCCAG
CAGTCTAACTTCCAGCTCATCGTCATCACCCACGACGAGGAATTTGTGGG
CACCATGCGCACGCAACTGGGCTCCATCGCCGGCTTCAACATGCCGGAGT
ACTACTGGTGCGTGTCGCGAGAGCAGACGTGCGGCCCCTCAGGACAGTTC
TACTCACGCATGACGCGCAAGCCGCTGTGA
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protein sequence of jgi.p|Trimin1|166414

>Trimin1|166414|e_gw1.44.95.1 ID=Trimin1|166414|e_gw1.44.95.1|Name=jgi.p|Trimin1|166414|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=260bp
MAEVQNRMGECKESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRK
KLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYK
GGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVL
ASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQ
QSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQF
YSRMTRKPL*
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mRNA from alignment at Contig_44:472719..477298-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9091 ID=mRNA_9091|Name=jgi.p|Trimin1|166414|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4580bp|location=Sequence derived from alignment at Contig_44:472719..477298- (Tribonema minus UTEX_B_3156 )
ATGGCCGAGGTGCAGAACCGCATGGGGGAGTGCAAGGAGTCGCGCGCAGA
GCTTGGTGGCAGGCTGACAGCGCTCAGAGATCAGGTAAACCTACAATACT
CACATGCATGGCAGGCTGACATCGTTCAGATATTGTTTAAACCCAGGATA
CGGGCTAGAATAAAAGCATACAGGCAGGCTGACAGCACTCAGAGTTCAGG
TAAACCTACAAAACTCACACGCACGGCAGGCTGACATCGTTCAGAGATTT
GGTAAAGCCAGAATACGGACTTGAATACAGGTAGGCTGACGGCCCAAGAG
TTTAGTTAAGATCAGCTTGAAGACCAGCCTGATGCAGTACCAAGGTGGAT
GCAGCACACCCGCAACGAGTTGCAATCTGGCCAGTAGACTGAATGCGATT
GCATGGCAGGTCGGTCGGCTGCCGCTTTGAATGCGCGTTGCAACAGTAGT
GGGGCAGCATCAAGTCTGGTTCGTTTGCTACAGTATGGTGGTGTACAGGT
CTGAAATGCAGCAAATAGATGACGGCATTGTAATTGTTGGAGTGACAGGT
TTGTGTGCGTGCTGCAGGGCGAGAACCAGTGCAAAGTCAATATGATAATT
GCAGTAGCACTATTGCTGACACATCCTGGGGGTTCGACGGTTAACAGCAG
AGACCTCCCTCAACATCCCACTGCCAGTGGTCATGAAACTGGACACAGGT
AGTGGTCATGGCAAGCATTTGCCATGCGCCGTCATGTCAGCATGGCATGT
CGCACCTCTAACGAAAACGAATCAAAAGATCGTAGAGCTCTAGGTGCCAA
GGGATGGGTAGCCGCAAGTGTGCCTTCCACCTCTAACATTTGCAACTGCT
CAATTAGCTGCAGTAGCAAGACCATCCCATTTGCCAGCCGCTGCAGAGCA
CACCGTACTTCCTTCATGCCAGCCTGCCATGCACAAGCCTCATCGCCTCT
CACTCCATCCCATTTCATTGTCATGGCAACGCAGGGCCGGGACTTGAAGC
AGAGGCTCAAGGGCGGCTCTTACGCAGGAGTGCAGGAGAAGCGTCGCAAG
AAGCTCATTGACGTTGAGACCACCGCCATGGCCGTTGCGGACCTCGAGAA
GTACTGGACTGCGCTCGACAAGGTGGTAATTGTGATCAAGAATCATGCTT
CGATAATATCACGCTGTGGCCATGAATCGACCACAGCTCTGTAGTTGTTT
GAACCTTGTGAACACAAGTTCTGGTGGATGAATGATTGTCGTGCAGCGCT
CAACAAGAGGAAGATTGCGAAAGATTTTTTTGATGCCGCATGCTGCTAAC
ATGACGCGACCACTTCTGCACAGCTTGAAACCAAGTGAAACCTTATCCGA
GGAACCCATTGCAGCCCGACCCCTCCCTCTAACTCTCACTAACATCGCCA
TTGATGACCTCCCTCCCTGTTGCTGCGTCCCTTGACTAGGCCCTGATGCG
CTACCACCACATGAAGATTGCTGAGATCAACAAGATCATCCGCGAGCTGT
GGCAGATCACCTACAAGGGCGGCGACATTGACATGATTGAGATTGTGTCG
GGCGAAGACGGTGCCTCCAACAGGGCGGGACGCAGCTACAACTACCGCGT
CGCGATGCGCAAGGTGCTTTGTTTGGGAGGGTGCAACTCGCACAGACTTC
ATGAATCAGTGCATCAAACTCCTGACAATGATGGGTTGGCATTCAAGCCA
TGTGTGCAGCTACTGTAGTCTGGCCATGCAGGATCTGCTGCGTCAAGAAT
GCGACCCGCATTGTAACTGATACTCAAGCATCCTATGGTCATCTAAGTAA
ACTATGTCTCGCACTGACTGCAGTAGACGCTTGCATGCACCTACCTGCAT
TAGCTCGCACAGTATGATTCACTTCCGCACACTTTTCACTTGAAGCGTTG
CTATGAATTTCAACACTGAATTTTCGGCAGTGTCATGACACTGTGTTTGT
GGTACCTGCCTGGCTGGTACAAGTGCATCTCGTAGGTTGTCACCACTGTC
TACATCAACGAGTGTCATGCCTTGCACACACCAACTGACACGGTAGCTGA
TGACCATCATCACCATTGCGCTGTGTGGTGTGTGTCAGGGCTCAACCATA
CTGGACATGAAGGGCCGCTGCAGTGCGGGTCAGAGGGTGCTCGCGAGCAT
CGTCATCAGGCTGGCGCTGGCAGAGACATTCTGCATCAACTGCGGCATGT
AAGTAACCTGAGGACAGTGACATACTTCAGGAGTACAACGTGTGCCGACG
GGCATCGTATCCTCCATTGTGCGTTATCATGGTACATATGGCTCATTGCA
ATTTCGCAATCCAGCGAGCATGCCATTGAAGCACCATTCCCTTGTGCTCA
CATCCGCTACGGGGCACAATATCATTGCACATGGGTTCATCATTCAAGTG
CTGCCAGAGGACAGAGGTGGCTCCAAGGTGCATGCTCTGAAGCAAGTGGC
GAGCAGTGTTGTGGATTGTACATGACCGCAAGTCAGCTGCTGCGTTTCAT
CTGCCGCCTTCCACAGATGCACGCATTGCTTTGCTGCTCCAAAAGGGCTC
TACGCCTTTGTATGCCAATGCTTGTTGATCCACCACTGAAGCGCAGCTCA
CAGCCCATGTCATTTTTTGAGCATGTGCTTCACCTCCCGCGCTCCACCCA
AAGCCGGCAACCCTCGTGCCCCGTTGTCAAAACCAGTGCGCAATCTTGCG
CTGGCTGCAGCATCTGAAGCATGAGAGTTTTCACCTGTTGCCTGCTCTGC
TGACATCTGTCTCAGCCTTGAGCTGGACGAGCCCACAACCAACCTGAAAG
TTGCGCTCGCTGCAGCATCTGAACAAGCATTTGACGTCTGTTGCCTGCAC
TTCTGACTATTTGTCTCAGCCTTGCACTGGATGAGCCCACGACCAACCTG
GACTTTGAGAACAAGGACGGCCTGGCCAAGGCACTCGCGCGCATCATTGC
TCAGCGCAGCCAGCAGTCTAACTTCCAGCTCATCGTCATCACCCACGACG
AGGTATGTATGTTCAAACATCATGTTGCAATGGAAACGAATCAAAAGATC
GTAAAGCTAAAGCTGACAAGGTGTGTTTAGTCGTCAGATTGAATGCCTTC
CACCAATAACCGTGGTCGCCGCTGATTGGCCACGAGTCAAACAGCGCCAC
CATATCAGCACATACTTGCTTGATCAAGAAGATGTGGGCCATTGCAAGAC
CCGGACACGCGCATGTCATATTTATAAGTATGAGGAGCAAGATAGCTTAT
ATTGCAGTACTTCAATGGCGCATCTTATGGTCTTCCTAGACTTCTCAACG
TGCCAGGATGCTTTGAAAACAAGTGAAGGCTCTGACTTTGGTGTGATTGG
TGCCTGGCACATTGGAATGTCGAGTTGAAGTTAGTGTGATGGTGTTTGAT
TATCACATCCCTACCTGCAGTGGGCGACATCAACGGTAAGCACTGTTGGC
TCCCATGCAGTGTACCGTCAGCTGCACCTCAACGTCTGAGCATGGATTAA
CAACGCTATGGTGACCTTCATCTGCAGCAGTACCAAGGGGTCACGCATGT
TCATCAGCGACTGACGGTGATAAATGAGCGACCAGCATTCTGACCAATCT
ACCTGTATCAATATGGTGCTTGTGAATGCCCAGTGTCCATGACCTACTGC
ATGCCCCAACTTGCACTTGAACCACACACACACAAGGTCACAAGAAGTTG
GGCTTGCAAGGTGTTTGGCGCAAGCGTTGCAAGCGGCAGAGCTGCAACAG
TAATCAACCTTCATACACAAGGGCATGGGGGCTAGTCTCTGTGACGTTCA
CAAGCTGTTGGGCATGCAACATAGAAGTATGTCGCACAAGCGCTGCTTGT
AATGGAAGACATGTCCCGGCTCCAACAGGTTTTGACCGTCGCACAACCTA
AGTAGCCCCCATGCCCTTGTGTCTGAAGTCTGGCTGCTTCTTGCACGCCT
GCCACTTGCAACGCGTGCTCACAACATCCTCTATTCCCGACAGCCTGTGG
CTGCTGCATCTAGCCCCCGTGCTGTCGTGTCTGTGCCCATGCTCTCGTGT
CGGCAATACGTGGGCAGAGGGGCTAGATTCTGCAGCGACCACAAGCTATT
GGGCATGGGAGATGTGTCCCATGACCCGAAGTGACCTGCTGTATGCAGGG
GCAGCAGCAACACTCTCCCCTGCAACTGTTGGCTCGTGCTGTGCGTACTT
GTGGACTTGTAAGTATGTATGAAGGTCCCAGGAGAGGCCATGTGTCCTTT
GTTTGAGGGTTTACTCCTACGCCCCAAGAGCGTGGGCACCGGCAGTGCAA
TGCAGCTTAGCATCCACTCTCCGCGTGTGTACGGCATGATGCGCTCCGCT
CCGCCAGCTCCTTTCTATCAACGACAAACTCACCTCAGCGACGATCTGAC
GCTTTTATTTCTGTGATCTTTTGCATTTGACTCGTGCAGGAATTTGTGGG
CACCATGCGCACGCAACTGGGCTCCATCGCCGGCTTCAACATGCCGGAGT
ACTACTGGTGCGTGTCGCGAGAGCAGACGTGCGGCCCCTCAGGACAGTTC
TACTCACGCATGACGCGCAAGCCGCTGTGA
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Coding sequence (CDS) from alignment at Contig_44:472719..477298-

>mRNA_9091 ID=mRNA_9091|Name=jgi.p|Trimin1|166414|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=780bp|location=Sequence derived from alignment at Contig_44:472719..477298- (Tribonema minus UTEX_B_3156 )
ATGGCCGAGGTGCAGAACCGCATGGGGGAGTGCAAGGAGTCGCGCGCAGA
GCTTGGTGGCAGGCTGACAGCGCTCAGAGATCAGGGCCGGGACTTGAAGC
AGAGGCTCAAGGGCGGCTCTTACGCAGGAGTGCAGGAGAAGCGTCGCAAG
AAGCTCATTGACGTTGAGACCACCGCCATGGCCGTTGCGGACCTCGAGAA
GTACTGGACTGCGCTCGACAAGGCCCTGATGCGCTACCACCACATGAAGA
TTGCTGAGATCAACAAGATCATCCGCGAGCTGTGGCAGATCACCTACAAG
GGCGGCGACATTGACATGATTGAGATTGTGTCGGGCGAAGACGGTGCCTC
CAACAGGGCGGGACGCAGCTACAACTACCGCGTCGCGATGCGCAAGGGCT
CAACCATACTGGACATGAAGGGCCGCTGCAGTGCGGGTCAGAGGGTGCTC
GCGAGCATCGTCATCAGGCTGGCGCTGGCAGAGACATTCTGCATCAACTG
CGGCATCCTTGCACTGGATGAGCCCACGACCAACCTGGACTTTGAGAACA
AGGACGGCCTGGCCAAGGCACTCGCGCGCATCATTGCTCAGCGCAGCCAG
CAGTCTAACTTCCAGCTCATCGTCATCACCCACGACGAGGAATTTGTGGG
CACCATGCGCACGCAACTGGGCTCCATCGCCGGCTTCAACATGCCGGAGT
ACTACTGGTGCGTGTCGCGAGAGCAGACGTGCGGCCCCTCAGGACAGTTC
TACTCACGCATGACGCGCAAGCCGCTGTGA
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