mRNA_9036 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348638
Unique Name	mRNA_9036
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348638 vs. uniprot
Match: A0A836CEJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ9_9STRA)

HSP 1 Score: 397 bits (1020), Expect = 2.170e-135
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 1

Query:    1 MASSGVFPTHAGRRPYVGEQQGGGYDVSGGAGAGGFXXXYDYAQQQAMQQRLLQHLQMQQAEHMAAGQKRGLQHLYESAQESLSELDSHNYQPALGAGGLMGGGGTDAERIRIPPLRAKKESYWAGDAARGNGREGASGXXXXXXXSVSYASEPTPGHMFATSPFAAQHPQQXXXXXXXXXXXXXXXXXXXXXXXXXXQWASSGSMGSGGGGQQGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXSXXXXXXXXXXXXXXXXXXXXXXDGERSSAPLDTALPPMPNGSSSAGSSGGGTGSTVFALGSPLRTEAV 1014
            MASSGVFPTHAGRRPYVGEQQGGGYDVSGGAGAGGFXXXYDYAQQQAMQQRLLQHLQMQQAEHMAAGQKRGLQHLYESAQESLSELDSHNYQPALGAGGLMGGGGTDAERIRIPPLRAKKESYWAGDAARGNGREGASGXXXXXXXSVSYASEPTPGHMFATSPFAAQHPQQXXXXXXXXXXXXXXXXXXXXXXXXXXQWASSGSMGSGGGGQQGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXSXXXXXXXXXXXXXXXXXXXXXXDGERSSAPLDTALPPMPNGSSSAGSSGGGTGSTVFALGSPLRTEAV
Sbjct:    1 MASSGVFPTHAGRRPYVGEQQGGGYDVSGGAGAGGFXXXYDYAQQQAMQQRLLQHLQMQQAEHMAAGQKRGLQHLYESAQESLSELDSHNYQPALGAGGLMGGGGTDAERIRIPPLRAKKESYWAGDAARGNGREGASGXXXXXXXSVSYASEPTPGHMFATSPFAAQHPQQXXXXXXXXXXXXXXXXXXXXXXXXXXQWASSGSMGSGGGGQQGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXSXXXXXXXXXXXXXXXXXXXXXXDGERSSAPLDTALPPMPNGSSSAGSSGGGTGSTVFALGSPLRTEAV 338

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348638 vs. uniprot

BLAST of jgi.p|Trimin1|348638 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CEJ9_9STRA	2.170e-135	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_28	contig	Contig_28:939891..944713 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348638\|estExt_Genemark1.C_Ctg_280087
Hectar predicted targeting category	other localisation
TranscriptId	348960
Track	FilteredModels1
ProteinId	348638

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348638	gene_9036	Tribonema minus UTEX_B_3156	gene	Contig_28 939891..944713 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348638	Trimin1\|348638\|estExt_Genemark1.C_Ctg_280087	Tribonema minus UTEX_B_3156	polypeptide	Contig_28 939891..944713 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9036_4	exon_9036_4	Tribonema minus UTEX_B_3156	exon	Contig_28 939891..940546 -
exon_9036_3	exon_9036_3	Tribonema minus UTEX_B_3156	exon	Contig_28 941684..941804 -
exon_9036_2	exon_9036_2	Tribonema minus UTEX_B_3156	exon	Contig_28 942525..942746 -
exon_9036_1	exon_9036_1	Tribonema minus UTEX_B_3156	exon	Contig_28 944696..944713 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9036	CDS_9036	Tribonema minus UTEX_B_3156	CDS	Contig_28 944696..944713 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_28:939891..944713-
coding sequence from alignment at Contig_28:939891..944713-

spliced messenger RNA

>mRNA_9036 ID=mRNA_9036|Name=jgi.p|Trimin1|348638|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1017bp|location=Sequence derived from alignment at Contig_28:939891..944713- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGAGTGGCGTGTTTCCCACGCATGCGGGGAGGAGGCCCTACGT
GGGGGAGCAGCAGGGTGGGGGGTATGATGTGAGCGGGGGGGCGGGGGCTG
GGGGGTTTGCGGGGGCGTACGACTACGCTCAGCAGCAGGCGATGCAGCAG
CGGCTGCTGCAGCACCTGCAGATGCAGCAGGCGGAGCACATGGCGGCGGG
GCAGAAGCGCGGCTTGCAGCACCTCTACGAAAGCGCTCAGGAGTCGCTGT
CAGAACTGGACAGTCACAACTATCAGCCAGCGTTGGGGGCAGGAGGGCTG
ATGGGGGGGGGTGGCACAGATGCAGAGCGCATTCGGATACCGCCGCTGCG
GGCAAAGAAGGAGTCGTATTGGGCAGGTGATGCCGCCAGGGGGAATGGCA
GGGAAGGCGCAAGCGGCGCCGGCGGCGGCGGCGGAGGCAGCGTCAGTTAC
GCATCTGAGCCGACCCCTGGACACATGTTTGCGACGTCGCCATTCGCTGC
GCAACACCCGCAACAGCAGCAGCAGCAGCAGCAGCAACCCTACTACCTCC
ACCAGCACATGGCGCAACTGCGGCAGCAGCAGCTGCAGCTGCAGCAGTGG
GCCAGCAGTGGCAGCATGGGCAGCGGAGGTGGGGGTCAGCAAGGTGACTC
TGGAAGCGGTGGGGGCAGTTATGGTGCAGGCACCGGCGGCGGTGGCAGCG
GTGGCAGCAGCGGCAATAGCAGCAACGGCGGCGGCGGCAGCAGCGGCAAT
GGTAGCAACGGCGGCGGCGGCAGCAGCGGCAACGGCAGCAATGGCGGCAG
TGGCAGCAGCGGCGGCGGCGGCAGCAGCGGTGAGCCCGCAGCGCATGGCA
CTGGCAGCAGCTATGCCGGCGGCACTGACGGGGAGCGCAGCAGTGCTCCG
CTGGACACAGCTCTGCCGCCGATGCCAAACGGCAGCAGCAGCGCTGGCAG
CAGCGGCGGCGGCACTGGCAGCACCGTGTTCGCACTGGGGTCACCATTGA
GAACTGAGGCGGTGTAG

protein sequence of jgi.p|Trimin1|348638

>Trimin1|348638|estExt_Genemark1.C_Ctg_280087 ID=Trimin1|348638|estExt_Genemark1.C_Ctg_280087|Name=jgi.p|Trimin1|348638|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=339bp
MASSGVFPTHAGRRPYVGEQQGGGYDVSGGAGAGGFAGAYDYAQQQAMQQ
RLLQHLQMQQAEHMAAGQKRGLQHLYESAQESLSELDSHNYQPALGAGGL
MGGGGTDAERIRIPPLRAKKESYWAGDAARGNGREGASGAGGGGGGSVSY
ASEPTPGHMFATSPFAAQHPQQQQQQQQQPYYLHQHMAQLRQQQLQLQQW
ASSGSMGSGGGGQQGDSGSGGGSYGAGTGGGGSGGSSGNSSNGGGGSSGN
GSNGGGGSSGNGSNGGSGSSGGGGSSGEPAAHGTGSSYAGGTDGERSSAP
LDTALPPMPNGSSSAGSSGGGTGSTVFALGSPLRTEAV*

mRNA from alignment at Contig_28:939891..944713-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9036 ID=mRNA_9036|Name=jgi.p|Trimin1|348638|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4823bp|location=Sequence derived from alignment at Contig_28:939891..944713- (Tribonema minus UTEX_B_3156 )
ATGGCGTCGAGTGGCGTGGTGAGCCTTGTTCTGCGTAATTGCAAGCTTGA
CAGCAACGCTGGTGTCTTGTGTCAGCATCTCTCTCAGCCGCCCCTCTCCC
CCGCCCTAGTGCGCACTTCATCGACGTTGATCAATTGCAGTTGGGCCTTG
CACTCATGCTGCAACACACACACTGCATCGAGTTGGATGCCAAATTGTGT
GATGGCATCGATCACAAGTCAGCATCTGACGTGCTAGCCGCCTCGTTCAC
CAACTTTTTCATCGTATGTGCGCAGGTGACACACATGCCTCATCCCAGAG
ACGCAATAGCGGAGGAGGCGTCCCTAAGGAGGAACTGCGATCAGTGCGTT
GAGAAGGTGCTTGCTGACCTACCTGAGGCATATCCTGCCACCATATCTAT
TCTGCACCAAAGTTTTCGCCTGATGCACCTCACGTGTGCCTATGATCAAT
CACTAAGCGTCAACGCTGCCGCTTTGGAGCTTGTACTATCTAGTTGTGTA
CCTAGCCGCATTGTTTTGCGATCCATCATGAGCCTCAAACACTGCGTGCT
GGTGTGCAGCAGCCAGGCAGACAAGCCAATCAACAATGTGCCTCGCTTAT
GTATACTTTCAGGGCTGAATGCCGTTCTCCTGCAGGACAGAAAGTGGCTG
TAAATCTTCTGAATTCTCATGTCATCGCAGAAATCACCTGGCGCGGCATC
GACTATACTTAGAGAGCTAGTGTCAAAGGCAGGCTGCTGGCCAAATTTTT
TATGCCGAGGTTGAGTGACCTAGGGTTAGGGTTGGGGTTATGTGTGCAGG
TCATCGATACGCTTTGCCTATTCAATAGTGGTAGCCTGCAGAACTGGCAG
GTAGAACTGCTGGGTGTGCGGTCGGACCGAATTTGCTCATGTTTTTCCAT
TACGGCTGGGAAGGGCTTGCTGCATGCATCGATTGCATCACGATCCATCG
CTATGTATGCATGCTCTTGGCGTCGATTGATGCCAATACCTCCGCTGCTC
ACTGTGCACAGGGAGGGGGCCTGCGCATTGTTTGATCACATTGCGTCGCA
TGTTATCATGGCAACGTGTGTCTAATCTCACCTCTGCTTGTCCGTGCTGC
TGATCCGTTCTGCAGAAAGTGAGGTGCAACAGAGAACAGCCCTGCGCGCT
CTGCAAGTAAGTATGTTGGCAACGCAAACCTCAACTTCATCGATACTGGG
TTTTCTGCCTCATGACACCACTGCTTGCGGGCAACATAACAATGCAGCAG
CATTCAGTGATCAGTGCTTGTACAGTCTAGCACCACGCTCTCCGCCGACC
TTTTGATAGGTCATTCTCGCCTGTCAATCCTTCCATGTAATCCTCATACT
TGTAGTATAATGCACCATTGGATCTGCGTCTTTGCTCTTGTGATGCTGGC
GTGCATTCGCCGTCAGTTGGCAGGTCTCCAGCTTGCATCAAAGTTTTATT
AAGTTTTGTGTTCGCCCTCTGTTTCTTGTGTTGGTTTAGCATCATTGCAT
GATGTCAAGCTTGTCAACCACAGCAAGTGGCTGGCATACAACACTTTTTA
GGAAGGGATTGTGCTGAAGATGTTTGAACGGCATGTTGGCAGTCCTGGCA
TTGTGATGTCCATCTGTCTCATCACTGCACTCCTCTGAATGTCTTTGGTA
ATTTTCTCTCTGGGCCACTGTCAAACCCGAAGTTTCAAGCAATTGACTTG
CCCAATTCGCCTTCTGCTGCCGTTATGTCGCCCCCCCCTGTCAGGCGGCG
CAACATCCCCTGTGTGTACAGTTCAAAGCAGAAGCCGGGGCCCAAGACGC
GGCAGCCGAGCAAAGTCAACTTCAACGCGCGGCTACGGAAAGGCTCGCCA
AAGGCGCCACCCGCGCTTTTCCCCGCCCCCCAAATCAACCACATGAGTGA
AGGGCGTCAACCCAGTGCTCCTGCCACCAATGGGGGCGCTGATACCAACT
CTCCGGCGTTTTCTCAGTTTCCCACGCATGCGGGGAGGAGGCCCTACGTG
GGGGAGCAGCAGGGTGGGGGGTATGATGTGAGCGGGGGGGCGGGGGCTGG
GGGGTTTGCGGGGGCGTACGACTACGCTCAGCAGCAGGCGATGCAGCAGC
GGCTGCTGCAGCACCTGCAGATGCAGCAGGCGGAGCACATGGCGGCGGGG
CAGAAGCGCGGCTTGCAGCACCTCTACGAAAGCGCTCAGGTAATACTGTT
TTTTTGTTAGTCCCAGGTGCTCAGGACAGAATTGTTGAAGTTGAACCGCA
ATCTGTGTGCCATCTTTGGGGGCTCACCCTTGCAGCGGATGGCAATGCCT
GTAGCAGCGCACTGCACACAGGATTGTGCTGTACGTACTCACAGAAAGAA
GTGCAGCAGGCAGCGCCTGTATTACCTGCATGAATGTGCTCAGGCGATTC
CAAGCCTATGCCTGTGTACCGCGTAGTTTGAGGGTCAATCCTTCAAGAAA
GTTCTGAGTGTCTGCAGCAGATGTGTGACAGACTGAGTGAGCTGCAGCAA
CACTACCATTCGTCCATGTAGGGCGACCGAGCTACGACCGGCACAATCCA
GCCGGCGCCCATCCTTTGTTGAAGTTGAAGTTGAGAAGGCTATCAGCGCG
CACTGCGCCCTCTTTTTCATCCGCTTTGTGGTTTGATTTCAGCACATCTT
TTTCAACTGTATGGTGGCAGCCTTCAACAACCTTTTTAAACTATATGGAA
CAGTTCGCTGGTGGTGCGTGCTCAACAGCCGCTTGTCTCAAAGGAAGCCC
TCAATGAATTCTTCATGACTGCGCTTCCCTTGCTGCCACTGCCATGGCGA
TGCACCCTTCATACTCTTCTTCAGCGCTGACGCTGTCACATTGATTTGTC
TGTGCCAGGGCTTGGAGGGACAGATTGAAATGGAGGAGCCGGCTCGCATG
CGTGCACAGGAGTCGCTGTCAGAACTGGACAGTCACAACTATCAGCCAGC
GTTGGGGGCAGGAGGGCTGATGGGGGGGGGTGGCACAGATGCAGAGCGCA
TTCGGATACCGCCGCTGCGGGCAAAGAAGGGTGAGCGTCACATGGCTGTA
TATTGAAGTTGAAGTTGAAGTGCACTGTAAGATGGTGCTTTTACTTTTGT
TTGGTTCTTGCTTGAGACGCGAAAAGGCCCACCCAGATCATCGACATGAG
GCTTGCCGCCAGTGCCTTTACGTTGACAAAGTGTATCGATGCTCATTGGC
AAATACCCATAGCGCTGTACTTGAGGAGTATGGTTTGGTGCTGAATACTG
GTGTGCAACAGGAGCAATATGCGCTGCTAGCGATACTGGCTCTGCAGGAT
GGCAGCAGGGTAAGGCGACAATACTGACCGTGTTGCACAACGAGGCACGC
GTGACCACAGGTTGGGTCGGTGCGTGACAGCCGCCCTCGATAGTCCAGTA
TCATCGTCGTACGTAGAGTTCGATAGTCCAACAGTATTGTTGTATGTATG
TATGTATGTACAGTGCACAGGGAAATTGCCTCGACACAACGTGCACCATG
TGGAATCGTCGCATCAGTCATTTAACCAATGCCCACTGGAGAAGTGGAGT
TCAGTGGGGACGCATGCGTATTGGAAAAGCATCCGCAGTGTCCAGCGGGT
AATTGACGGAAGCGTGTGTATATACTGCGCCAGTCCAATGGCTTGTAAAG
TTTCTGATTGGAAGTGCACTGTAGAAAGCAAACAGAGGTCCACAACTAAC
AGCAGTCGGCAAAAGAAATCATCTTACTACCGCATATCACTTCAAGACAG
CGGAGCACAGACATCGATGAAACACAGTGCAGGACACCATGAGGGCAAAA
AACACATGATGCGACTGGTGCAGTAAACTCAATCTTGCATTGCTTAATAG
TGAGTTGGCACACAGCCATACTTCAAGAAGCTATCACAGTGCACTTTGCT
CAGAAGTGGTTGCACTCGTCTGCGGTGATGTCGCGTAGCAGTACATCTTA
GTGTGTTAATTGTGTATGACAATATGCAATCTCGCTTTCATGCACTTACA
GTCACTGCGCGCTCTGTTCTGTCCTGCTCACGCCTCACTGGCATGCCTGT
CCCTTTTCACTCTCTTGGATGCAAAAGTCAGCAACATCGGCGGCGGCAGC
GGGCGCACCGGTGTAGGTATCGCAGGCACCAGCACTGCTTTTCGCAGCCC
ACCGTCCAGCCTGACAGAGTCGTATTGGGCAGGTGATGCCGCCAGGGGGA
ATGGCAGGGAAGGCGCAAGCGGCGCCGGCGGCGGCGGCGGAGGCAGCGTC
AGTTACGCATCTGAGCCGACCCCTGGACACATGTTTGCGACGTCGCCATT
CGCTGCGCAACACCCGCAACAGCAGCAGCAGCAGCAGCAGCAACCCTACT
ACCTCCACCAGCACATGGCGCAACTGCGGCAGCAGCAGCTGCAGCTGCAG
CAGTGGGCCAGCAGTGGCAGCATGGGCAGCGGAGGTGGGGGTCAGCAAGG
TGACTCTGGAAGCGGTGGGGGCAGTTATGGTGCAGGCACCGGCGGCGGTG
GCAGCGGTGGCAGCAGCGGCAATAGCAGCAACGGCGGCGGCGGCAGCAGC
GGCAATGGTAGCAACGGCGGCGGCGGCAGCAGCGGCAACGGCAGCAATGG
CGGCAGTGGCAGCAGCGGCGGCGGCGGCAGCAGCGGTGAGCCCGCAGCGC
ATGGCACTGGCAGCAGCTATGCCGGCGGCACTGACGGGGAGCGCAGCAGT
GCTCCGCTGGACACAGCTCTGCCGCCGATGCCAAACGGCAGCAGCAGCGC
TGGCAGCAGCGGCGGCGGCACTGGCAGCACCGTGTTCGCACTGGGGTCAC
CATTGAGAACTGAGGCGGTGTAG

Coding sequence (CDS) from alignment at Contig_28:939891..944713-

>mRNA_9036 ID=mRNA_9036|Name=jgi.p|Trimin1|348638|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1017bp|location=Sequence derived from alignment at Contig_28:939891..944713- (Tribonema minus UTEX_B_3156 )
ATGGCGTCGAGTGGCGTGTTTCCCACGCATGCGGGGAGGAGGCCCTACGT
GGGGGAGCAGCAGGGTGGGGGGTATGATGTGAGCGGGGGGGCGGGGGCTG
GGGGGTTTGCGGGGGCGTACGACTACGCTCAGCAGCAGGCGATGCAGCAG
CGGCTGCTGCAGCACCTGCAGATGCAGCAGGCGGAGCACATGGCGGCGGG
GCAGAAGCGCGGCTTGCAGCACCTCTACGAAAGCGCTCAGGAGTCGCTGT
CAGAACTGGACAGTCACAACTATCAGCCAGCGTTGGGGGCAGGAGGGCTG
ATGGGGGGGGGTGGCACAGATGCAGAGCGCATTCGGATACCGCCGCTGCG
GGCAAAGAAGGAGTCGTATTGGGCAGGTGATGCCGCCAGGGGGAATGGCA
GGGAAGGCGCAAGCGGCGCCGGCGGCGGCGGCGGAGGCAGCGTCAGTTAC
GCATCTGAGCCGACCCCTGGACACATGTTTGCGACGTCGCCATTCGCTGC
GCAACACCCGCAACAGCAGCAGCAGCAGCAGCAGCAACCCTACTACCTCC
ACCAGCACATGGCGCAACTGCGGCAGCAGCAGCTGCAGCTGCAGCAGTGG
GCCAGCAGTGGCAGCATGGGCAGCGGAGGTGGGGGTCAGCAAGGTGACTC
TGGAAGCGGTGGGGGCAGTTATGGTGCAGGCACCGGCGGCGGTGGCAGCG
GTGGCAGCAGCGGCAATAGCAGCAACGGCGGCGGCGGCAGCAGCGGCAAT
GGTAGCAACGGCGGCGGCGGCAGCAGCGGCAACGGCAGCAATGGCGGCAG
TGGCAGCAGCGGCGGCGGCGGCAGCAGCGGTGAGCCCGCAGCGCATGGCA
CTGGCAGCAGCTATGCCGGCGGCACTGACGGGGAGCGCAGCAGTGCTCCG
CTGGACACAGCTCTGCCGCCGATGCCAAACGGCAGCAGCAGCGCTGGCAG
CAGCGGCGGCGGCACTGGCAGCACCGTGTTCGCACTGGGGTCACCATTGA
GAACTGAGGCGGTGTAG