mRNA_9029 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A835Z794_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z794_9STRA) HSP 1 Score: 545 bits (1404), Expect = 3.930e-196 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1 Query: 1 MALSQKGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAEDIWREMQRLKITPNTWSYSALINCYTVAGDPEKAEAVLAIMRQSTMAKPDAIAYNRYVQSTCSCLLWIQAAQVCAVCFECRTAWHYPLQPLAKQQCVLRATISSNPQVMSDMHAL 804 MALSQKGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAEDIWREMQRLKITPNTWSYSALINCYTVAGDPEKAEAVLAIMRQSTMAKPDAIAYNRYVQSTCSCLLWIQAAQVCAVCFECRTAWHYPLQPLAKQQCVLRATISSNPQVMSDMHAL Sbjct: 1 MALSQKGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAEDIWREMQRLKITPNTWSYSALINCYTVAGDPEKAEAVLAIMRQSTMAKPDAIAYNRYVQSTCSCLLWIQAAQVCAVCFECRTAWHYPLQPLAKQQCVLRATISSNPQVMSDMHAL 268
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A835Z487_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z487_9STRA) HSP 1 Score: 261 bits (666), Expect = 1.380e-79 Identity = 152/315 (48.25%), Postives = 176/315 (55.87%), Query Frame = 1 Query: 1 MALSQKGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRK--LRAA----------------------------------------------------------------------------------------------------EDIWREMQRLKITPNTWSYSALINCYTVAGDPEKAEAVLAIMRQSTMAKPDAIAYNRYVQS 639 MAL KGKW AA+KAF+DAEAKHHKPTVSENRALL+ALAR GG E WAAV RL LGALTA DYEHAL+AHEKP HWSGAL+LLS MDKN I WTVRACSHALL G AGRLN ALQL+++M +RG+ P P ++L LI ECRR +K +R A EDIWREMQRLK+TP+T SY A INCY VAG+P+KAE+VLA MRQS+M KP+AI YN +++ Sbjct: 149 MALGHKGKWEAAVKAFQDAEAKHHKPTVSENRALLFALARGGGKDEVWAAVQRLSDLGALTAFDYEHALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTLGFAGRLNAALQLLQKMHQRGLSPDPANYLQLIAECRRHSKKALVRDAGDSRGGSKQAXXXXXXXXXXXXXXXXXXXSAAINVCGKAGDWAAAVHIFQQMQQKVKRAKKIDLMLTAYRSMLTSGQRPNVVTLTCILDQAGAAGECSITEDIWREMQRLKLTPDTQSYGACINCYAVAGEPDKAESVLAEMRQSSMTKPNAIVYNSVMKA 463
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A835YZD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD3_9STRA) HSP 1 Score: 221 bits (564), Expect = 4.210e-67 Identity = 114/188 (60.64%), Postives = 137/188 (72.87%), Query Frame = 1 Query: 16 KGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAED----------IWREMQRLKITPNTWSYSALINCYTVAGD 549 KGKW AA+KAF+DAEAKHHKPTVSE RALL ALAR GG EAWAAVHRLR +GALT DYE+AL+AHEKP HWSGALKLL MD N I WTVRAC+HALL CG AGRLNDA QL+ +MR+RG+ P D+L LIGEC RS +K+R A D + + M++ P+ ++A+++ AGD Sbjct: 3 KGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGD 190
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A835Z0J2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J2_9STRA) HSP 1 Score: 222 bits (565), Expect = 8.140e-66 Identity = 122/223 (54.71%), Postives = 158/223 (70.85%), Query Frame = 1 Query: 1 MALSQKGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRS--RRKLRAAED----------IWREMQRLKITPNTWSYSALINCYTVAGDPEKAEAVLAIMRQSTMAKPDAIAYNRYV 633 MAL++KGKW AA+KAF+DAEAKHHKPTVSENRALL+ALAR+G A+AWAAVHRLR +GALTA DYE+AL+AHEK HWSGAL+LLS MDK I WT+RACSHALL G AGR+N ALQL+++M +RG+ P P +L LIGECRRS R+K+R A D + + M++ P+ ++A+++ AGD A V M+ + P+ +YN + Sbjct: 70 MALNRKGKWEAAVKAFQDAEAKHHKPTVSENRALLFALARNGNTADAWAAVHRLRGMGALTAFDYEYALQAHEKSRHWSGALRLLSHMDKKNIKWTIRACSHALLTLGFAGRMNAALQLLDKMCERGLSPHPDSYLQLIGECRRSSSRQKVRDAGDSRGGSKQAVAMLQHMKQTGTKPDIRHFTAVVDACGKAGDWIDALDVFQQMQLELV--PNVRSYNTLI 290
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A836CJC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC7_9STRA) HSP 1 Score: 184 bits (467), Expect = 2.500e-55 Identity = 92/130 (70.77%), Postives = 104/130 (80.00%), Query Frame = 1 Query: 73 KPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAED 462 KPTVSE RALL+ALAR G EA AAV RLR +GALTA DYE+AL+AHEKP HWSGAL+LLS MDKN I WTVRACSHALL CG AGRLNDA QL+++M GMRP V++L LIGECRR+ K+R A D Sbjct: 1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGD 130
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A835YWP6_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP6_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.650e-40 Identity = 91/208 (43.75%), Postives = 114/208 (54.81%), Query Frame = 1 Query: 124 GGPAEAWAAVHRLRVLGALTAVDYEH---ALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAEDIWREMQRLKITPNTWSYSALINCYTVAGDPEKAEAVLAIMRQSTMAKPDAIAYNRYVQSTCSCLLWIQAAQVCAVCFECRTAWHYPLQPLAK 738 GG A+A + + G + D++H A+ K W+ A+ + M + + + L G A +++ L EM G P V F L+ + AEDI REMQRLKI PNTW+Y AL NCY V G+PEKAEAVLA MRQSTM KP AIAYNRYV STCSCL + VCF+CRTAW + LQP AK Sbjct: 35 GGSAQAMELLQLMEQPG-VEKPDFKHYSAAINVCGKAGDWTSAVHIFEQMQLQGVHANISCWTALLDALGRAKKVDQMLATYREMLASGQEPDTVAFGTLLAHAGAAGES-GIAEDIRREMQRLKIAPNTWTYCALTNCYAVTGEPEKAEAVLAEMRQSTMTKPSAIAYNRYVPSTCSCLRLLWDCLGGDVCFDCRTAWQWILQPTAK 240
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A835YWR0_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR0_9STRA) HSP 1 Score: 134 bits (336), Expect = 1.640e-35 Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 1 Query: 190 DYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAED----------IWREMQRLKITPNTWSYSALINCYTVAGDPEKAEAVLAIMRQSTMAKPDAIAYNRYVQS 639 +YE+AL+A+EK HWSGAL+LLS MD N WTVRACSHALL CG AGRLNDA QL+++M +RG+ P D+L LI EC +S +K+RAA D + + M++L + PN Y A IN AGD A + M+ + +P+ I ++ +++ Sbjct: 2 NYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQHKGV-QPNLITWSGIIRA 160
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A835YZG1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZG1_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 5.750e-19 Identity = 69/191 (36.13%), Postives = 102/191 (53.40%), Query Frame = 1 Query: 7 LSQKGKWAAALKAFEDAEAKHHKPTVSENRALLYALAR-DGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRA---------AEDIWREMQRLKITPNTWSYSALINCYTVAGD 549 LS++G+W A F + +PT ++ R LL A + ++A A+ +LR GA T DYE + AH + GAL+ L++MD+ W+ ACS AL CG+AG+LNDALQL+ +MR+RG+ G FL LI EC R + RA A ++ R M + + P+ +SA + GD Sbjct: 4 LSREGRWREACALFNTVK----EPTAAQVRVLLLNNAAFNFSFSQAVLALRQLRASGAATVRDYELVIIAHR--YSARGALQFLAEMDRVGFGWSPIACSAALQACGIAGQLNDALQLLGKMRERGIAAGAGIFLTLIKECVRGKVSRRAGDSRGGGVRARELLRVMGEMGVVPDVRHFSAAMLVCAGVGD 188
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A835ZGM9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGM9_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.480e-18 Identity = 65/191 (34.03%), Postives = 103/191 (53.93%), Query Frame = 1 Query: 7 LSQKGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGP-AEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRA---------AEDIWREMQRLKITPNTWSYSALINCYTVAGD 549 LS++G+W A F + +PT ++ RALL A ++A A+ +LR LGA+T D+E + AH + GAL+ L++MD+ +W+ AC AL CGVAG+L+DA+QL+ +MR+R + FL LI EC R + RA A ++ R M+ + + P+ ++A + GD Sbjct: 8 LSKEGRWREACALFNTIK----EPTAAQVRALLLKNAAFNQLFSQAVLALRQLRALGAVTVRDFELVIIAHR--YSARGALQFLAEMDRAGFSWSPIACGAALQACGVAGQLDDAMQLIGKMRERSIAVDAALFLTLIKECGRGKDGRRAGDSRGGVVRARELLRAMEEMGVAPDIRHFNAAMLVCAAVGD 192
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Match: A0A835YY11_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY11_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 6.990e-17 Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 1 Query: 241 ALKLLSDMD-KNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSR---------RKLRA------AEDIWREMQRLKITPNTWSYSALINCYTVAGDPEKAEAVLAIMRQSTMAKPDAIAY 621 A++LL M+ K+ +T V A+ +CG G A+ + ++++ +G+RP + L+ R++ R++ A AE+IWREM++ ++TP SY AL+NCY VAG+PEKAEA LA MRQST PDAI Y Sbjct: 14 AMELLQLMENKSGLTPGVGHYCAAMNVCGKEGDWTTAVHIFQQVQLQGVRPHTSCWNALLDALGRAKQLDQMLATYREMLASGQSGVAEEIWREMRQRRMTPGVKSYGALVNCYAVAGEPEKAEAKLAEMRQSTTTAPDAIMY 156 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163863 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9029 ID=mRNA_9029|Name=jgi.p|Trimin1|163863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_28:864354..865994+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCTTTGAGCCAAAAGGGCAAGTGGGCAGCAGCTCTTAAAGCCTTTGAback to top protein sequence of jgi.p|Trimin1|163863 >Trimin1|163863|e_gw1.28.168.1 ID=Trimin1|163863|e_gw1.28.168.1|Name=jgi.p|Trimin1|163863|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp MALSQKGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAback to top mRNA from alignment at Contig_28:864354..865994+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9029 ID=mRNA_9029|Name=jgi.p|Trimin1|163863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1641bp|location=Sequence derived from alignment at Contig_28:864354..865994+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_28:864354..865994+ >mRNA_9029 ID=mRNA_9029|Name=jgi.p|Trimin1|163863|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_28:864354..865994+ (Tribonema minus UTEX_B_3156 )back to top |