mRNA_9028 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163994
Unique NamemRNA_9028
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: A0A835YXJ5_9STRA (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ5_9STRA)

HSP 1 Score: 167 bits (423), Expect = 8.170e-53
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 MIVMKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSRMQFV 228
            MIVMKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSRMQFV
Sbjct:    1 MIVMKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSRMQFV 76
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: A0A8H6SXU8_9AGAR (Uncharacterized protein n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6SXU8_9AGAR)

HSP 1 Score: 86.7 bits (213), Expect = 7.980e-20
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    4 IVMKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSR 216
            ++ KR+ GL GD VS    L      +++PPGH+W+EGDN A S DSR++GPVPM L+ GR VA +WPPSR
Sbjct:   81 VLCKRVTGLAGDIVS----LDPSGEGILIPPGHMWIEGDNPANSRDSRNFGPVPMGLIEGRLVARIWPPSR 147
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: E9HEB0_DAPPU (Mitochondrial inner membrane protease subunit n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9HEB0_DAPPU)

HSP 1 Score: 86.3 bits (212), Expect = 9.750e-20
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 MIVMKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSRMQFV 228
            M + KRI+G+PGD +  +C         VVP GH+WLEGDNK+ S DSR YGPVP  LV GR++  +WP + +Q +
Sbjct:   79 MFICKRIIGVPGDKIKINCIQHN-----VVPRGHIWLEGDNKSNSSDSRTYGPVPQGLVRGRALCRIWPLNSIQML 149
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: A0A0D6ERA5_SPOSA (Mitochondrial inner membrane protease subunit n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6ERA5_SPOSA)

HSP 1 Score: 85.5 bits (210), Expect = 1.090e-19
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    7 VMKRIVGLPGDTVSYHCCLTTC---RAPLV----VPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWP 207
            V+KR++GLPGDTV    C+      R P V    VPPGH+WL GDN + S DSRDYGPVPMA+V GR VA VWP
Sbjct:   42 VLKRVIGLPGDTV----CVDPSGERRKPEVEWCKVPPGHVWLAGDNASNSTDSRDYGPVPMAMVRGRVVARVWP 111
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: UPI001C7C69E6 (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7C69E6)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-19
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    4 IVMKRIVGLPGDTVSYHCCLTTCRAP----LVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPS 213
            ++ KRI+GLPGDT+      T  +AP    +V+P GH+W+ GDN A S DSR+YGPVPMALV GR  A VWPPS
Sbjct:  109 VICKRIIGLPGDTICVDP--TGEKAPSTEHVVIPKGHIWISGDNSAYSRDSREYGPVPMALVRGRLYARVWPPS 180
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: A0A078I3P0_BRANA (Mitochondrial inner membrane protease subunit 2 n=10 Tax=Brassiceae TaxID=981071 RepID=A0A078I3P0_BRANA)

HSP 1 Score: 85.9 bits (211), Expect = 1.380e-19
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   10 MKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSRMQFV 228
            +KRIVGLPG+ +S      + R  + VP GH W+EGDNKA S+DSR +GP+P+ L+ GR  +VVWPP R+  +
Sbjct:   86 IKRIVGLPGEWIS------SSRDVIRVPEGHCWVEGDNKASSLDSRTFGPIPLGLIRGRVTSVVWPPQRVSKI 152
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: UPI001F4F56B7 (mitochondrial inner membrane protease subunit 1-like isoform X4 n=3 Tax=Schistocerca americana TaxID=7009 RepID=UPI001F4F56B7)

HSP 1 Score: 84.3 bits (207), Expect = 7.040e-19
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    7 VMKRIVGLPGDT--VSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSRM 219
            + KR+ GLPGD   + + C         VVPPGH+WLEGDN+  S DSR+YGPVP  L+ GR+V  VWPPS +
Sbjct:   86 ICKRVTGLPGDRKLMGFSC--------KVVPPGHVWLEGDNRNNSTDSRNYGPVPYGLIRGRAVCKVWPPSEI 150
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: A0A061ES82_THECC (Mitochondrial inner membrane protease subunit 2 n=3 Tax=Byttnerioideae TaxID=214909 RepID=A0A061ES82_THECC)

HSP 1 Score: 84.3 bits (207), Expect = 7.920e-19
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   10 MKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSRMQFV 228
            +KRI+GLPGD V  H  +        VP GH W+EGDN A S+DSR +GPVP+ LV GR V ++WPP R+  V
Sbjct:   90 VKRIIGLPGDWVGTHYDVVK------VPEGHCWVEGDNSASSMDSRSFGPVPLGLVNGRVVHILWPPHRVGSV 156
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: A0A6D2KPQ1_9BRAS (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2KPQ1_9BRAS)

HSP 1 Score: 84.0 bits (206), Expect = 8.030e-19
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   10 MKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSRMQFV 228
            MKRIVG+PG+ +S      + +  + +P GH W+EGDNKA S+DSR +GP+P+ L+ GR   VVWPP R+  +
Sbjct:   86 MKRIVGMPGEWIS------SSQDVIRIPEGHCWVEGDNKASSLDSRTFGPIPLGLIQGRVTRVVWPPQRISKI 152
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BLAST of jgi.p|Trimin1|163994 vs. uniprot
Match: V4NRB8_EUTSA (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4NRB8_EUTSA)

HSP 1 Score: 83.6 bits (205), Expect = 1.140e-18
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   10 MKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRDYGPVPMALVTGRSVAVVWPPSRMQFV 228
            +KRIVG+PG+ +S      +    + VP GH W+EGDNKA S+DSR YGP+P+ L+ GR   VVWPP R+  +
Sbjct:   86 IKRIVGMPGEWIS------SSNDVIRVPQGHCWVEGDNKASSLDSRTYGPIPLGLIRGRVTHVVWPPQRVSKI 152
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163994 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXJ5_9STRA8.170e-53100.00Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A8H6SXU8_9AGAR7.980e-2053.52Uncharacterized protein n=1 Tax=Mycena indigotica ... [more]
E9HEB0_DAPPU9.750e-2048.68Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A0D6ERA5_SPOSA1.090e-1959.46Mitochondrial inner membrane protease subunit n=1 ... [more]
UPI001C7C69E61.240e-1956.76uncharacterized protein n=1 Tax=Marasmius oreades ... [more]
A0A078I3P0_BRANA1.380e-1950.68Mitochondrial inner membrane protease subunit 2 n=... [more]
UPI001F4F56B77.040e-1952.05mitochondrial inner membrane protease subunit 1-li... [more]
A0A061ES82_THECC7.920e-1952.05Mitochondrial inner membrane protease subunit 2 n=... [more]
A0A6D2KPQ1_9BRAS8.030e-1947.95Mitochondrial inner membrane protease subunit 2 n=... [more]
V4NRB8_EUTSA1.140e-1849.32Mitochondrial inner membrane protease subunit 2 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_28contigContig_28:860489..861251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163994|e_gw1.28.24.1
BRITEko00000,ko00001,ko01000,ko01002,ko03029
KEGG Pathwayko03060,map03060
KEGG koko:K09648
Descriptionsignal peptidase I family protein
COG categoryOU
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0681@1|root,KOG3399@1|root,KOG1568@2759|Eukaryota,KOG3399@2759|Eukaryota,37U5U@33090|Viridiplantae,3GI9P@35493|Streptophyta,3HU6U@3699|Brassicales
Evalue1.96e-19
Seed ortholog3711.Bra029738.1-P
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImp1 homolog, Inner Membrane Peptidase complex subunit 1
Ec32 orthologEc-08_002060.1
TranscriptId164316
TrackFilteredModels1
ProteinId163994
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163994gene_9028Tribonema minus UTEX_B_3156 geneContig_28 860489..861251 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9028_1exon_9028_1Tribonema minus UTEX_B_3156 exonContig_28 860489..860527 +
exon_9028_2exon_9028_2Tribonema minus UTEX_B_3156 exonContig_28 861060..861251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9028CDS_9028Tribonema minus UTEX_B_3156 CDSContig_28 860489..860527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163994Trimin1|163994|e_gw1.28.24.1Tribonema minus UTEX_B_3156 polypeptideContig_28 860489..861251 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9028 ID=mRNA_9028|Name=jgi.p|Trimin1|163994|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_28:860489..861251+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGTCATGAAGCGCATAGTGGGCCTGCCAGGGGATACAGTTTCTTA
TCATTGCTGTCTCACCACTTGCAGAGCGCCACTTGTCGTCCCCCCCGGTC
ACTTGTGGCTAGAGGGCGACAACAAGGCCAAGTCCATTGACTCAAGGGAC
TACGGACCAGTGCCCATGGCTCTGGTGACGGGCAGAAGTGTGGCAGTTGT
GTGGCCACCATCCCGCATGCAGTTTGTCTGA
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protein sequence of jgi.p|Trimin1|163994

>Trimin1|163994|e_gw1.28.24.1 ID=Trimin1|163994|e_gw1.28.24.1|Name=jgi.p|Trimin1|163994|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp
MIVMKRIVGLPGDTVSYHCCLTTCRAPLVVPPGHLWLEGDNKAKSIDSRD
YGPVPMALVTGRSVAVVWPPSRMQFV*
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mRNA from alignment at Contig_28:860489..861251+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9028 ID=mRNA_9028|Name=jgi.p|Trimin1|163994|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=763bp|location=Sequence derived from alignment at Contig_28:860489..861251+ (Tribonema minus UTEX_B_3156 )
ATGATTGTCATGAAGCGCATAGTGGGCCTGCCAGGGGATGTCATAGTGAA
CCGCCCCCCACCAGCAACGGCATTTGGGGTACCCCTGAGGTATGTTCGTT
GAAGTTGAATGCCATGCAAGTACATTGATCATGCAGGCAGGTTGTGCGGT
TGCTTGTGTGCTGTAGTACGGTGGAAGTTGTGGCAGTGCTCAAGCATGTG
ACGCAGCTGTGATGTGTGCAAGACGTGCATGCTGCACCATAGATTGATTA
TTAGAGTTCTGCTGTCAGCAGCAGTTGACGAAATGGGCATCTCAGCCGCC
CCACGTACAAAATATGGGTACATACCTTTGTACCTGCATTTCACTGTAGC
GCGCTTGGCAGAGAAAGACCGGCGTCTTGTGCTACCGCAACTTCACTTTC
CAATATGTTGGTCTGTCAAAGTTGCTGATCGCTGCACACAGAGGCTTTGC
ACGCATGAACGGACAGCGTCTGACTTGGCAACCTTTTTGACAGTGGCGTC
TGCACCATACCTGCGCTTCACTGCCTCTCCACACTGGCACAGCCTGACCG
CAGCTCCACTGCCACTAAAAGACAGTTTCTTATCATTGCTGTCTCACCAC
TTGCAGAGCGCCACTTGTCGTCCCCCCCGGTCACTTGTGGCTAGAGGGCG
ACAACAAGGCCAAGTCCATTGACTCAAGGGACTACGGACCAGTGCCCATG
GCTCTGGTGACGGGCAGAAGTGTGGCAGTTGTGTGGCCACCATCCCGCAT
GCAGTTTGTCTGA
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Coding sequence (CDS) from alignment at Contig_28:860489..861251+

>mRNA_9028 ID=mRNA_9028|Name=jgi.p|Trimin1|163994|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_28:860489..861251+ (Tribonema minus UTEX_B_3156 )
ATGATTGTCATGAAGCGCATAGTGGGCCTGCCAGGGGATACAGTTTCTTA
TCATTGCTGTCTCACCACTTGCAGAGCGCCACTTGTCGTCCCCCCCGGTC
ACTTGTGGCTAGAGGGCGACAACAAGGCCAAGTCCATTGACTCAAGGGAC
TACGGACCAGTGCCCATGGCTCTGGTGACGGGCAGAAGTGTGGCAGTTGT
GTGGCCACCATCCCGCATGCAGTTTGTCTGA
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