mRNA_8988 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150007
Unique NamemRNA_8988
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A836CFQ1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ1_9STRA)

HSP 1 Score: 753 bits (1944), Expect = 3.420e-275
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 1
Query:    1 QKQKLCYSDEDDALTYIKLEALPTVPDLRDPRLADVNLAQAPYWNFTCPWEWSKYSCVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAAPGVEVREDAIEWSDDWPCHSTVNCIPRGRHSGFGGGCVQFGLAEEPGAGAVSLCFTAADQAVELEHIIKRFAMTPRHDILVMNLGVHLTSDEHALQVQHMPDTWTGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSVDYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYLRAHLAQLEGG 1095
            QKQKLCYSDEDDALTYIKLEALPTVPDLRDPRLADVNLAQAPYWNFTCPWEWSKYSCVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAAPGVEVREDAIEWSDDWPCHSTVNCIPRGRHSGFGGGCVQFGLAEEPGAGAVSLCFTAADQAVELEHIIKRFAMTPRHDILVMNLGVHLTSDEHALQVQHMPDTWTGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSVDYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYLRAHLAQLEGG
Sbjct:    1 QKQKLCYSDEDDALTYIKLEALPTVPDLRDPRLADVNLAQAPYWNFTCPWEWSKYSCVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAAPGVEVREDAIEWSDDWPCHSTVNCIPRGRHSGFGGGCVQFGLAEEPGAGAVSLCFTAADQAVELEHIIKRFAMTPRHDILVMNLGVHLTSDEHALQVQHMPDTWTGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSVDYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYLRAHLAQLEGG 365          
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A836CRQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRQ4_9STRA)

HSP 1 Score: 414 bits (1065), Expect = 6.840e-142
Identity = 204/341 (59.82%), Postives = 247/341 (72.43%), Query Frame = 1
Query:   73 VPDLRDPRLADVNLAQAPYWNFTCPWEWSKYSCVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAAPGVEVREDAIEWSDDWPCHSTVNCIPRGRHSGFGGGCVQFGLAEEPGAGAVSLCFTAADQAVELEHIIKRFAMTPRHDILVMNLGVHLTSDEHALQVQHMPDTWTG--DPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSVDYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYLRAHLAQLE 1089
            +PDL DPR+A V++AQAPYWN TCPWEWSKYSC HQ+Q +RARAALLYS+D+L GGGC LD FDG AF+RLLGTR+LVFAGDSLSRQ FIS ACLLHA+P V V ED I+W  DWPCH T NCI  G HSGF GGCV+F L  E  AG +++CF  A++ V ++ I  R A+ PR D+LV NLG H+  +E A  V+ + D WT   D A  P+L+YRETAPQHF+                + AG +DA    G AAC  ++D      S+PER GLAGRVPF+AA P+ A+AG LHV AGV+G A+ +QDCTHWC+PGVPDVWSAQL++YLRAHLA LE
Sbjct:    1 MPDLSDPRIAAVDVAQAPYWNLTCPWEWSKYSCAHQEQAERARAALLYSRDILEGGGCTLDPFDGEAFIRLLGTRKLVFAGDSLSRQNFISTACLLHASPRVAVVEDRIKWYTDWPCHGTRNCIRGGAHSGFIGGCVRFALDGESDAGELTVCFNPAERGVPVDAIAARHALVPRRDVLVANLGTHMRKNEQAPHVRQVLDKWTAPADAARLPLLIYRETAPQHFR--------------GTSPAGEYDAVAAIG-AACQATIDLDAYSLSTPERRGLAGRVPFVAANPWSAEAGALHVAAGVLGVAKNTQDCTHWCLPGVPDVWSAQLFNYLRAHLAALE 326          
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A835Z1X0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X0_9STRA)

HSP 1 Score: 273 bits (697), Expect = 2.170e-85
Identity = 160/373 (42.90%), Postives = 195/373 (52.28%), Query Frame = 1
Query:   13 LCYSDEDDALTYIKLEALPTVPDLRDPRLADVNLAQAPYWNFTCPWEWSKYSCVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAAPGVEVREDAIEWSDDWPCHSTVNCIPRGRHSGFGGGCVQFGLAEE-----------PGAGAVSLCFTAADQAVELEHIIKRFA-MTPRHDILVMNLGVHLTSDEHALQVQHMPDTWTGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSVDYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYLRAHLAQLEGG 1095
            LCYS E   L YI L       D       D     APYW+ +CPWEWSK+SC HQ QT +A A+   SQ  L G  CRL+ FD  AF+ LLG R++VF GDSL+RQ F S  CLLHA+P V V  D IEWS  W C    NCI RGRHSGF  GCV F  A             P A A+ +C+   D    +   + R   +  R DI+V N G+H+T  E +  + H       D A  PI VYRET+PQHF+         GK +                   C  SV   ++  S PER  +AG+V  LA  P  A AG++HVGAGV        DCTHWC PGVPD+W+  L++YL AHLA LE G
Sbjct:   44 LCYSSEASPLDYIPLSIRSEPSDGEGITEKDA-ARDAPYWDLSCPWEWSKFSCAHQGQTAKAIASFALSQK-LEGEDCRLNPFDAQAFLALLGRRKIVFVGDSLTRQMFTSLLCLLHASPAVRVVSDTIEWSTKWSCLRLPNCIERGRHSGFTKGCVTFTPAAASAAASATGGGAPEADALEVCYDYKDDGELVAFAMLRHPDLRARRDIVVANSGIHMTLRERSYDMTHYVAHARADAARLPIAVYRETSPQHFEGTAGGLYFKGKSS----------------FKRCKDSVVLAEEPLSEPERAYMAGQVAMLAVNPLAAAAGNMHVGAGV--------DCTHWCAPGVPDLWNVALFNYLSAHLAALEEG 390          
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A7S3L0M3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L0M3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.030e-20
Identity = 97/380 (25.53%), Postives = 151/380 (39.74%), Query Frame = 1
Query:  127 YWNFTCPWEWSKYSCVHQDQTQRARAA----LLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHA---------APGVEVREDAIEWSDDWPCHSTVNCIPRGRHSGFGGGCVQFGLAEE----PGAGA--------------------------VSLCFTAADQAVELEHI----IKRFAMTPRH-------DILVMNLGVHLTSDEHALQVQHMP---------------DTWTGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSV--DYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQL 1053
            Y+N +CP+EWSKYSC+HQ Q++RA A+    + + Q ++   G +           L    +LV  GDSL RQ F+S ACLLH+         A    +++  ++W   WPCH+T+NC+  G HSGF  G +      E    P  GA                          ++      +   E  HI    +++ A+  RH       DILV ++G+H +  E  +  Q +                 + +     +P L Y  T  QHF                  A G ++ +       C  +   + R +      R G  G V  +         G+ H+G G         DC+H+CMPG PD+ + +L
Sbjct:  128 YYNLSCPFEWSKYSCIHQGQSERAAASRELLVQHRQTIIDLFGMQ-SHLPVQRKPLLPRNSRLVLTGDSLMRQVFVSLACLLHSFGNTTSNTNATTSMIQDARVDWMYSWPCHNTINCVAGGPHSGFSVGSLWLTNGAEIHFLPHGGASRSKQEEDMYERFERELLDNNDVDTTINNITNNYNATTEPGHITLGKVRKSALPSRHGVELSHRDILVASVGIHYSLRESEVTAQRLARIGQALQQXXXXXXXXSHSTTALGQPQLWYMTTPTQHFDT----------------ADGQYERNHSNTSQTCTNTTRTNPRLEMEQRVLRSG-GGGVLLMEYNDL--DFGYAHIGHG---------DCSHYCMPGPPDLVALRL 478          
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A7S3FFP7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FFP7_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 7.680e-16
Identity = 84/303 (27.72%), Postives = 131/303 (43.23%), Query Frame = 1
Query:  268 AAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAAPGVEVREDA---------IEWSDDWPCHSTVNCIPRGRHSGF--------GGGCVQF------------GLAEEPGAGAVSLCFTAADQAVELEHII--KRFAMTPRHD--ILVMNLGVHLTSDEHALQVQHMPDTWTGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDA--DTVAGLAACVPSVDYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYLRA 1071
            +AF      ++++  GDSL +Q FIS AC+      V  R  +         ++W   WPCH T NC+  G+HSGF        GGG V F              +EEP     ++      +A  ++ +   ++   +PR D  ++ +N G+H      AL+               P +V+  T  QHF                  A+G +++    +A  A CV  V   ++ R+  ER  L GR   L     + +   L +GA  +G     +DCTH+CMPGVPDV +A++  +LRA
Sbjct:   10 SAFGSPFPAKRVLLTGDSLMKQLFISIACVARHHHSVRSRTYSGSDSPPHITVDWEQAWPCHGTPNCVRSGQHSGFNRGSVFFAGGGEVHFVPLDGHAPTRTSRQSEEP-----NILARILGEAERIDRVTFGRKTIGSPRGDPDVIFVNAGIHNARASLALRNFADKLDQLNTSTNLPEVVWVTTPTQHFPT----------------ASGQYESRSSAIANNAWCVERV--ARNPRADMERTILQGRTGVLR---HMLEYDDLGLGALHIGL----RDCTHYCMPGVPDVMAARMVLHLRA 282          
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A7S1WSH4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WSH4_ALECA)

HSP 1 Score: 87.0 bits (214), Expect = 1.420e-15
Identity = 97/341 (28.45%), Postives = 146/341 (42.82%), Query Frame = 1
Query:  127 YWNFTCPWEWSKYSCVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAAPGVEVREDAIEWSDD-WPCHSTVNCIPRGRHSGFGGGCVQFGLAEE----PGAGAVSLCFTAADQAVELEHIIKRFA-MTPR-------------HDILVMNLGVH------LTSDEHAL--QVQHMPDTWTGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSVDYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYLR 1068
            Y N +CP+EWSKYSCVH     + +A L  ++   T  G   D F            + V  GDS  RQ FIS ACL  ++P +   E  ++W++D WPCH + NCI  G  SGF  G +++    E    P +G + L   A    +  E  +   A + P               D +V  +G+H        +D  AL   ++ +PD        +P L+   +  QHF  +     G  +G  A++A              CVP+         +P     A R+        +   G   +GA  +G    + DC+H+CMPGVPD  +A+L+  LR
Sbjct:   28 YSNLSCPFEWSKYSCVHMGGNFQKQAELG-AEYFGTHSGEIQDAFGSMPPP----DSRTVMIGDSTLRQLFISIACL--SSPFLA--ESRVDWAEDHWPCHGSDNCISHGVQSGFNVGSLRYTNGHELHYLPHSGTLHLGEGAIFARMRRELAVFGGATLGPNTALRSQCGGRLSARDTVVAGVGIHDELVESTINDLSALGEAMRSLPD--------QPRLLLVASLTQHFDTED----GTWRGPKASSA--------------CVPAE------AQNPREVREAARLQPGKNIDEVISWGDAGLGAHHIG----NGDCSHYCMPGVPDTVAARLFRRLR 323          
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A7S2UE00_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UE00_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.010e-13
Identity = 99/365 (27.12%), Postives = 155/365 (42.47%), Query Frame = 1
Query:  109 NLAQAPYWNFTCPWEWSKYS-----------CVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAAPGVE-VREDA-IEWSDD---WPCHSTVNCIPRGRHSGFGGGCVQFGLAEEPGAGAVSLCF--------------TAA--DQAV------ELEHIIKRFAMTPRHDILVMNLGVHLTSDEHALQVQHMPDTW--------TGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSVDYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYL 1065
            N++   YWN +CP E  ++S               +    A  A  YS D        L R   A        R +VF GDSL+RQ FIS +CL+H+A  ++ V  D  +EW+D    W   S  +    G H+ F    V+F  + +  +GA +L +              TA   DQ++      EL+   +R  +  R D++V++ GVH+  +E    ++   D +        TG+  + P +VY  T  QHF  D       G GA         D + +  +  C PS+ ++     + + + + G+V FL            H+G   V  A    DCTHW  PG+ DV +A+L  +L
Sbjct:    3 NVSMDLYWNMSCPLELYRHSQAFMSSFDTNATTQSENLAHAELARQYSADQHR----TLQRIFHALSQGAFDGRTIVFDGDSLTRQLFISLSCLVHSAGYIQDVTNDIHVEWTDKEIRWG--SIPSKYWHGPHTDFEYAKVRFLGSGKGRSGAGTLVYAHHVSPKKLREEWLTACWQDQSIRAFYGSELKQ--ERIDLNER-DVVVLSAGVHVAHNERRWYMRAYQDLFECYSHQKSTGNLTSWPKMVYHMTPLQHFWTDEGEYCDPGYGAKPEIKE-RCDKERLDNMPTCQPSL-FKVSQFQNEDVQKMKGKVDFLLGENM----DQKHLGLMHVSNA----DCTHWLQPGMHDVLAAELGEFL 348          
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A8J2WZ36_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ36_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.770e-11
Identity = 79/271 (29.15%), Postives = 115/271 (42.44%), Query Frame = 1
Query:  328 RQAFISAACLLHAAPGVEVREDAIEWSDDWPCHSTVNCIPRGRHSGFGGGCVQFGLAEE---PGAGAV----SLCFTAADQAVELEHIIKRFAMTPRH--------DILVMNLGVHLTSDEHALQVQHMPDTWTGDPAAR-----PILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSV--DYRQDWRSSPEREGLAGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYLRAH 1074
            RQ F++  C L   P +  R   ++W++ WPCHS+ NC+  G HSGF  G +    +E    P AG +    +       + +   H +  F +TPRH        D++V N G+H   ++     Q + +      A R     P  VY  T  QHF                A + G +     +    C PS+  + R +   S  REG+   V  +     L  AG LHVGA          DCTH+CMPGVPDV + +L   +  H
Sbjct:    2 RQVFVALGCGL--LPVLSGR--FVDWAERWPCHSSPNCVEGGAHSGFNVGWMALPGSEVWFVPHAGTLRHGQANIIDRFRKELASNHSVS-FRLTPRHERVFLGRDDVVVYNAGLH--KNDRTRLYQQLDNFGRELLAQRGRHSLPRWVYVTTVTQHF----------------ATSDGQYSNGRRSKR--CQPSIPSNPRLESELSVLREGV--NVDRILRVDDL-DAGALHVGA------YDGSDCTHYCMPGVPDVTAHRLLELVHPH 238          
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A5N6LYS8_9ASTR (PMR5N domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LYS8_9ASTR)

HSP 1 Score: 66.2 bits (160), Expect = 2.010e-8
Identity = 83/354 (23.45%), Postives = 135/354 (38.14%), Query Frame = 1
Query:  127 YWNFTCPWEWSKYSCVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAAPGVEVREDAIEWSDDWPCHSTVNCIPRGRHSGFGGGCVQFGLAEEPGAGAVSLCFTAADQAVELEHIIKRFAMTPRHDILVMNLGVHLTSDEHALQVQHMPDT----WTGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAG-----LAACVPSVDYRQDWRSSPEREGLAG-RVPFLAAT-------------------------------PFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYL 1065
            Y   TCP+   +++CV+  +  R     LY +      GCRL RFDG  F+  L  + ++F GDSLSR  ++S  C++H++                        +P+  H+      V   + ++      +  FT  +  V   H +    +  R    V+NL   LT+ +  L   ++       W    A++P   Y +   + +K D+   +  GK  A        DA+ V            PS     DW   P+ +  AG ++P L++T                                 L + GH        G A  S DC+HWC+ GVPD W+  LY+ +
Sbjct:   50 YNESTCPFLEKEFNCVNNGRPDR-----LYLKYRWQPHGCRLSRFDGRNFLEKLRGKTIMFVGDSLSRNQWLSMLCMIHSS------------------------VPKANHA------VNISVIQD----MTTYTFTDYEVRVTYHHNLYLVDIVKRRFGRVLNLDT-LTAGKLWLDADYLVFNTWHWWNRRGASQPF-EYIQDGSRIYK-DMDRVVAFGK--AITTWGRWIDANVVRNKTKVFFQGISPSHYNGTDW-GEPKAKSCAGQKIPLLSSTYPGPLPLALMVLKNALKAIKKPVTLLDITTLSLLRKDGH----PSAYGLA--SMDCSHWCLAGVPDTWNVLLYNLM 352          
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Match: A0A068UCX5_COFCA (PMR5N domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068UCX5_COFCA)

HSP 1 Score: 63.5 bits (153), Expect = 1.460e-7
Identity = 85/347 (24.50%), Postives = 136/347 (39.19%), Query Frame = 1
Query:  127 YWNFTCPWEWSKYSCVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQLVFAGDSLSRQAFISAACLLHAA-PGVE---VREDAIEWSDDWPCHSTVNCIPRGRHSGFGGGCVQFGLAEEPGAGAVSLCFTAADQAVELEHIIKRFAMTPRHDILVMN------------------LGVHLTSD-EHALQVQHMPDTW-----TGDPAARPILVYRETAPQHFKLDVRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSVDYRQDWRSS--PEREGLAG-RVPF-LAATPFLAQAGHLHVGA--GVVGAAQRSQDCTHWCMPGVPDVWSAQLYSYL 1065
            Y +  CP+   +++C+     +  R   LY +      GC L +FDG AF++    + ++FAGDSL+R  ++S ACLL+ + PG      RE  I         ST+  +  G             L  +  A  V L        ++L+ +     +   HD+L  N                  +G  L +D +  +  +   +TW     T    A+  + +   +P H+K     Q                     AG    +P   Y      +   +++ L+  RVP  L     L+Q   L V A     GAA  + DCTHWC+ G+PD W+  LY+ L
Sbjct:   37 YNSSICPFIEKEFNCL-----RNGRPDHLYLKYRWQPQGCDLAKFDGRAFLQKFRGKSILFAGDSLTRDQYMSLACLLYTSVPGTNYNMTREGLI---------STLKFLDYG-----------LTLILDRNAFLVDLVPEKIGVVLKLDSVAGSEKLWSGHDLLAFNTWHWWGYKGAQQPWKYIQIGTRLLTDMDRMVAFETALETWAKWVDTNVDPAKTTVFFLGVSPSHYKGSDWNQP---------------QVKNCAGQTRPLPGPTYPGVLPPALAVQKKVLSEMRVPVKLLDITTLSQ---LRVDAHPSFYGAATAAADCTHWCIAGLPDTWNQLLYNLL 340          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150007 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFQ1_9STRA3.420e-275100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CRQ4_9STRA6.840e-14259.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1X0_9STRA2.170e-8542.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3L0M3_9STRA1.030e-2025.53Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S3FFP7_9EUKA7.680e-1627.72Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1WSH4_ALECA1.420e-1528.45Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S2UE00_9STRA2.010e-1327.12Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A8J2WZ36_9STRA6.770e-1129.15Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5N6LYS8_9ASTR2.010e-823.45PMR5N domain-containing protein n=2 Tax=Mikania mi... [more]
A0A068UCX5_COFCA1.460e-724.50PMR5N domain-containing protein n=4 Tax=Coffea Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_28contigContig_28:342822..345439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150007|gw1.28.142.1
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0008150,GO:0008374,GO:0009987,GO:0012505,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0031410,GO:0031982,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0071554,GO:0097708,GO:0098791
DescriptionProtein trichome birefringence-like 14
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGs28K4X@1|root,2QRJ5@2759|Eukaryota,37HWU@33090|Viridiplantae,3GB2A@35493|Streptophyta,44D4A@71274|asterids
Evalue8.75e-09
Seed ortholog4081.Solyc07g042020.2.1
Hectar predicted targeting categoryother localisation
TranscriptId150329
TrackFilteredModels1
ProteinId150007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150007gene_8988Tribonema minus UTEX_B_3156 geneContig_28 342822..345439 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8988_1exon_8988_1Tribonema minus UTEX_B_3156 exonContig_28 342822..343358 +
exon_8988_2exon_8988_2Tribonema minus UTEX_B_3156 exonContig_28 344882..345439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8988CDS_8988Tribonema minus UTEX_B_3156 CDSContig_28 342822..343358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150007Trimin1|150007|gw1.28.142.1Tribonema minus UTEX_B_3156 polypeptideContig_28 342822..345439 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8988 ID=mRNA_8988|Name=jgi.p|Trimin1|150007|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1095bp|location=Sequence derived from alignment at Contig_28:342822..345439+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGAAGCAGAAGCTCTGCTACAGCGATGAGGACGACGCACTGACCTACAT
TAAGCTTGAGGCCCTCCCCACAGTGCCAGACCTCCGGGACCCCAGGCTCG
CCGACGTCAACCTCGCGCAGGCACCCTACTGGAACTTCACGTGCCCGTGG
GAGTGGTCCAAATACAGCTGCGTGCACCAGGACCAGACGCAGAGGGCGCG
CGCAGCCCTGCTCTACAGCCAGGACATGCTAACGGGCGGGGGGTGCAGGC
TGGACCGCTTCGACGGCGCGGCGTTCGTGCGCCTGCTCGGCACGCGGCAG
CTCGTCTTCGCGGGGGACTCCCTCAGCCGCCAGGCGTTCATCTCGGCGGC
GTGCCTGCTGCACGCGGCGCCGGGCGTCGAGGTGCGCGAGGACGCCATCG
AGTGGTCCGACGACTGGCCCTGCCACAGCACCGTCAACTGCATCCCGAGG
GGGCGCCACAGCGGCTTTGGCGGGGGGTGCGTGCAGTTCGGGCTCGCGGA
GGAGCCGGGCGCCGGCGCGGTCAGCCTGTGCTTCACGGCCGCCGACCAGG
CCGTGGAGCTGGAGCACATCATCAAGCGCTTCGCCATGACGCCGCGCCAC
GACATCCTCGTCATGAACCTCGGCGTCCACCTCACCAGCGACGAGCACGC
GCTCCAGGTCCAGCACATGCCCGACACGTGGACGGGAGACCCCGCCGCAC
GGCCCATCCTCGTCTACCGCGAGACCGCGCCCCAGCACTTCAAGCTGGAC
GTCAGGGCCCAGCTCGGCGCGGGCAAGGGCGCGGCCGCGGCCGCCGCCGC
GGGCATGTTCGACGCGGACACGGTCGCGGGGCTGGCGGCGTGCGTGCCCT
CCGTGGACTACCGCCAGGACTGGCGCTCGTCCCCGGAGAGGGAGGGGCTC
GCGGGGCGCGTGCCGTTCCTCGCGGCGACGCCGTTCCTGGCGCAGGCGGG
GCACCTGCACGTGGGCGCGGGCGTCGTCGGCGCCGCGCAGCGCTCGCAGG
ACTGCACGCACTGGTGCATGCCGGGCGTGCCGGACGTGTGGAGCGCGCAG
CTGTACAGCTACCTGCGCGCGCACCTGGCGCAGCTGGAGGGCGGG
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protein sequence of jgi.p|Trimin1|150007

>Trimin1|150007|gw1.28.142.1 ID=Trimin1|150007|gw1.28.142.1|Name=jgi.p|Trimin1|150007|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=365bp
QKQKLCYSDEDDALTYIKLEALPTVPDLRDPRLADVNLAQAPYWNFTCPW
EWSKYSCVHQDQTQRARAALLYSQDMLTGGGCRLDRFDGAAFVRLLGTRQ
LVFAGDSLSRQAFISAACLLHAAPGVEVREDAIEWSDDWPCHSTVNCIPR
GRHSGFGGGCVQFGLAEEPGAGAVSLCFTAADQAVELEHIIKRFAMTPRH
DILVMNLGVHLTSDEHALQVQHMPDTWTGDPAARPILVYRETAPQHFKLD
VRAQLGAGKGAAAAAAAGMFDADTVAGLAACVPSVDYRQDWRSSPEREGL
AGRVPFLAATPFLAQAGHLHVGAGVVGAAQRSQDCTHWCMPGVPDVWSAQ
LYSYLRAHLAQLEGG
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mRNA from alignment at Contig_28:342822..345439+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8988 ID=mRNA_8988|Name=jgi.p|Trimin1|150007|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2618bp|location=Sequence derived from alignment at Contig_28:342822..345439+ (Tribonema minus UTEX_B_3156 )
CAGAAGCAGAAGCTCTGCTACAGCGATGAGGACGACGCACTGACCTACAT TAAGCTTGAGGCCCTCCCCACAGTGCCAGACCTCCGGGACCCCAGGCTCG CCGACGTCAACCTCGCGCAGGCACCCTACTGGAACTTCACGTGCCCGTGG GAGTGGTCCAAATACAGCTGCGTGCACCAGGACCAGACGCAGAGGGCGCG CGCAGCCCTGCTCTACAGCCAGGACATGCTAACGGGCGGGGGGTGCAGGC TGGACCGCTTCGACGGCGCGGCGTTCGTGCGCCTGCTCGGCACGCGGCAG CTCGTCTTCGCGGGGGACTCCCTCAGCCGCCAGGCGTTCATCTCGGCGGC GTGCCTGCTGCACGCGGCGCCGGGCGTCGAGGTGCGCGAGGACGCCATCG AGTGGTCCGACGACTGGCCCTGCCACAGCACCGTCAACTGCATCCCGAGG GGGCGCCACAGCGGCTTTGGCGGGGGGTGCGTGCAGTTCGGGCTCGCGGA GGAGCCGGGCGCCGGCGCGGTCAGCCTGTGCTTCACGGTACTTCAAGTTT ACTATTATGTGTGGAACCGCTTGGTCTGATAGCCAACAAGAAGTTTCAAA GAAGTTTCAAATATTTGTATTAAGTAGCAAAAACGTCACCACATTAAACT CTGGCTGCAGTATCTACAGCCCGTCCCCAATCTAGACCCTCTCTTCCTCC AACTTGAAGGCTCACTTCCACATAGTCCCCACAGCTTCAAGTAGTCCTGT CTCCCGTTGACAGCCACGTGGCCCATCACACGTTGATGGAGTTGTGCTGA TGAAGCTCACAATCCTTACAAGTATTACACTATATTGGAAAAACTCTCAG AGCCTGAATGACATGTTACAGGCAGCGCAAGCAGGCGCATACTTCTATGT TGTGTGTCCAGCGAGAGTATGAGCGGCATGTAGGAATGTGCACAGTATTA TTGGCTCTGAAGTTACTGTGATAGCAGCAGCAGCCTGCTGAGCAGCAGGA TTTGTAGAGTGATGCATAGAAGCAGTTGACGTTGCACACAGCAGGGGTTT GTTGAACAACCCCTGAGATATGTTCCGCAATTATGTGTGCTTCCAGGCGA GTAAGCGTCTCGTCGCAAAGGTTGTCTTCAGCACAACGTGCTGCACCCAA ACAGTGACCCGGCGGTCGCCGATGGCGACGCCACCTGTCACGAAAACATG CGGCTGCAGGCCATAGCGCACACGTGGTCAATCGCATAGCACATTGCGTC GCGACCCTGAGGCTTTGCTGACACGAAAACTAAAGCCTTGGGTACGCCCT GCTCGATGTATGGCTGCACGGGACGTGTTTATACTTTTCACCGCACTGAC CTCAATGCGCGTGTGAGCAGCAGCTTGTGTTCAGCGCATTTTCATAGCGT GGTGGGTTGCCAACCCACCGCAATTTTCAAACGGTAAGCACGTACTTTTT ATAAATTAGTTCTCACTCAGGTGCAAAAAAGCCCAGATGGTGGATGTCCA TGGCCTTGCAACCAGAATCTACATACACGAGTCTTTGTGAACACCTTGAA AGTCTCAATGCGCATTGCCAATCACTTCCAAACGACATGCACTTTTATCT ATTTCCGCTGCAGGGCGAAATACCCTGCAGCATGCAAAGTTTGTGCAGTA TGGACACCATACGTAAGCGAATGGCGCCATTCCTGCCCAACTACAGCTAC CTCCCCCCCCCCCTGGGTCTACTACTAATACCACGACTCCTACCACTACC ACTACTACCCTCCCCAGCATGTACCACGTTGGTACACCGACATGCATGTA TGTACGGAAATGAATGGAAATAAATCCAAGATGCGTGGAGCTTTGGACAG ACAATACAGAAGAGCCACACATGCCAGTGGACCATGCACTTGTGTGCGCA CACAGAATCAGGTTCTGAGTAGCACCGAGACGGTGCCGATAGCGCGCAGA CCAGCCTCTGAGCACTGCTGCTGCTGCTGCTGCCTGAGCGCATCCAGCGG CGCACATAAGAGCCTGCTGAGCACTGTCGCTGCTTCCGCCCGCCGTGCAC TCCGTCGCAGGCCGCCGACCAGGCCGTGGAGCTGGAGCACATCATCAAGC GCTTCGCCATGACGCCGCGCCACGACATCCTCGTCATGAACCTCGGCGTC CACCTCACCAGCGACGAGCACGCGCTCCAGGTCCAGCACATGCCCGACAC GTGGACGGGAGACCCCGCCGCACGGCCCATCCTCGTCTACCGCGAGACCG CGCCCCAGCACTTCAAGCTGGACGTCAGGGCCCAGCTCGGCGCGGGCAAG GGCGCGGCCGCGGCCGCCGCCGCGGGCATGTTCGACGCGGACACGGTCGC GGGGCTGGCGGCGTGCGTGCCCTCCGTGGACTACCGCCAGGACTGGCGCT CGTCCCCGGAGAGGGAGGGGCTCGCGGGGCGCGTGCCGTTCCTCGCGGCG ACGCCGTTCCTGGCGCAGGCGGGGCACCTGCACGTGGGCGCGGGCGTCGT CGGCGCCGCGCAGCGCTCGCAGGACTGCACGCACTGGTGCATGCCGGGCG TGCCGGACGTGTGGAGCGCGCAGCTGTACAGCTACCTGCGCGCGCACCTG GCGCAGCTGGAGGGCGGG
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Coding sequence (CDS) from alignment at Contig_28:342822..345439+

>mRNA_8988 ID=mRNA_8988|Name=jgi.p|Trimin1|150007|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1095bp|location=Sequence derived from alignment at Contig_28:342822..345439+ (Tribonema minus UTEX_B_3156 )
CAGAAGCAGAAGCTCTGCTACAGCGATGAGGACGACGCACTGACCTACAT
TAAGCTTGAGGCCCTCCCCACAGTGCCAGACCTCCGGGACCCCAGGCTCG
CCGACGTCAACCTCGCGCAGGCACCCTACTGGAACTTCACGTGCCCGTGG
GAGTGGTCCAAATACAGCTGCGTGCACCAGGACCAGACGCAGAGGGCGCG
CGCAGCCCTGCTCTACAGCCAGGACATGCTAACGGGCGGGGGGTGCAGGC
TGGACCGCTTCGACGGCGCGGCGTTCGTGCGCCTGCTCGGCACGCGGCAG
CTCGTCTTCGCGGGGGACTCCCTCAGCCGCCAGGCGTTCATCTCGGCGGC
GTGCCTGCTGCACGCGGCGCCGGGCGTCGAGGTGCGCGAGGACGCCATCG
AGTGGTCCGACGACTGGCCCTGCCACAGCACCGTCAACTGCATCCCGAGG
GGGCGCCACAGCGGCTTTGGCGGGGGGTGCGTGCAGTTCGGGCTCGCGGA
GGAGCCGGGCGCCGGCGCGGTCAGCCTGTGCTTCACGGCCGCCGACCAGG
CCGTGGAGCTGGAGCACATCATCAAGCGCTTCGCCATGACGCCGCGCCAC
GACATCCTCGTCATGAACCTCGGCGTCCACCTCACCAGCGACGAGCACGC
GCTCCAGGTCCAGCACATGCCCGACACGTGGACGGGAGACCCCGCCGCAC
GGCCCATCCTCGTCTACCGCGAGACCGCGCCCCAGCACTTCAAGCTGGAC
GTCAGGGCCCAGCTCGGCGCGGGCAAGGGCGCGGCCGCGGCCGCCGCCGC
GGGCATGTTCGACGCGGACACGGTCGCGGGGCTGGCGGCGTGCGTGCCCT
CCGTGGACTACCGCCAGGACTGGCGCTCGTCCCCGGAGAGGGAGGGGCTC
GCGGGGCGCGTGCCGTTCCTCGCGGCGACGCCGTTCCTGGCGCAGGCGGG
GCACCTGCACGTGGGCGCGGGCGTCGTCGGCGCCGCGCAGCGCTCGCAGG
ACTGCACGCACTGGTGCATGCCGGGCGTGCCGGACGTGTGGAGCGCGCAG
CTGTACAGCTACCTGCGCGCGCACCTGGCGCAGCTGGAGGGCGGG
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