mRNA_8978 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|163947
Unique Name	mRNA_8978
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|163947 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA)

HSP 1 Score: 437 bits (1123), Expect = 3.490e-155
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1

Query:    1 MVLAVTASFFGCGEGYPRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGNYPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAI 636
            MVLAVTASFFGCGEGYPRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGNYPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAI
Sbjct:    1 MVLAVTASFFGCGEGYPRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGNYPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAI 212

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BLAST of jgi.p|Trimin1|163947 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 306 bits (785), Expect = 5.250e-93
Identity = 158/175 (90.29%), Postives = 162/175 (92.57%), Query Frame = 1

Query:    1 MVLAVTASFFGCGEGYPRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGNYPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESV-NNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALD 522
            MV AVTASFFG  EG PRL+ELLDVVAHGVPV  KRQADFEAEWT  RG+YPLEPRHVPVFDCKVL  IALGRCIVMHAA+ RMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESV NNTTVFE+APVV CGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALD
Sbjct:  322 MVHAVTASFFGRVEGCPRLEELLDVVAHGVPV--KRQADFEAEWT--RGSYPLEPRHVPVFDCKVLNYIALGRCIVMHAAVVRMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESVDNNTTVFEDAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALD 492

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BLAST of jgi.p|Trimin1|163947 vs. uniprot
Match: A0A835ZCS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCS3_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.480e-90
Identity = 137/155 (88.39%), Postives = 141/155 (90.97%), Query Frame = 1

Query:    1 MVLAVTASFFGCGEGYPRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGNYPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRK 465
            MVLA  ASFFG GEGY RLQELLDVVAHGVPVSVKRQADFEAEWT  RGNYPLEPRHVPVFDCKVLEDIALGRC+VMHAAIARMYFSTRLHINPVFVVDEGAAK RVVHDLSALLHGESVNNTTVFEEAPVV CGHIFEAMLY +W+     PR+
Sbjct:    1 MVLAFIASFFGRGEGYRRLQELLDVVAHGVPVSVKRQADFEAEWT--RGNYPLEPRHVPVFDCKVLEDIALGRCVVMHAAIARMYFSTRLHINPVFVVDEGAAKLRVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLY-VWTCIYKGPRE 152

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BLAST of jgi.p|Trimin1|163947 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA)

HSP 1 Score: 243 bits (619), Expect = 9.210e-80
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 1

Query:  250 MYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPG 609
            MYFSTRLHINPVFVVDEGAA FRVVHDLSALLHGESVNNTTVFEEAPVV CGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPG
Sbjct:    1 MYFSTRLHINPVFVVDEGAANFRVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPG 120

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BLAST of jgi.p|Trimin1|163947 vs. uniprot
Match: A0A835YMP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.540e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1

Query:  484 MDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAI 636
            MDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAI
Sbjct:  110 MDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGGAI 160

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BLAST of jgi.p|Trimin1|163947 vs. uniprot
Match: A0A6H5JG94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG94_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.790e-19
Identity = 64/205 (31.22%), Postives = 101/205 (49.27%), Query Frame = 1

Query:   10 AVTASFFGCGEGYPRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGNYPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGES----VNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDV-RGPLLGYRYNDLVVVDLRLQFGWRSSPG 609
            A    +FG  +G+P+++EL+ ++  GVPV +   +  + E  +  GN+     H+P+   K+  D+   RC+V+    A       L ++PV VV     K RV++DLS      +    +N  T  +  P   C       L  + SLR   P+  +L++  DV  AFR + ++  +    GY   DL+VVDLRL FGW  SPG
Sbjct:   28 AAVRDYFGRRKGFPQIEELMTIITGGVPV-ITETSSTDLERALRYGNHSSADGHLPLLWEKLGNDVRRERCLVLEKTSAHEI--PNLRVSPVGVVV--THKPRVINDLSFNPTDRTTKGGLNADTNADTIPPCLCAGALPGFLTALVSLRAKCPKLHLLMATTDVNDAFRNVRINPDQAHNFGYTLGDLLVVDLRLPFGWTGSPG 227

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BLAST of jgi.p|Trimin1|163947 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.060e-17
Identity = 61/169 (36.09%), Postives = 92/169 (54.44%), Query Frame = 1

Query:   28 FGCGEGYPRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGNYPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDL---SALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRK-RILISKMDVKSAFRQLALD 522
            FG  + +PR+ +LL  ++ G PV V    + +AE  V+ GN+P    H      KV+ D+ LGR +V      R     R  ++P+ V+D+   KFR++HDL   S +    SVN+ T F++AP    GH+   +L R+  LRQ       ILI ++DVK AFRQ+ +D
Sbjct:  641 FGDVKKFPRVSQLLRSLSPGAPVDVGLGGNLDAE--VAYGNHPSALLHRDRITDKVVSDVILGRALVFDVRFIREILGVR--VSPLGVIDK--PKFRIIHDLTFTSGVPIRTSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIPVD 803

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BLAST of jgi.p|Trimin1|163947 vs. uniprot
Match: A0A835YTQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTQ8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.410e-9
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  550 YNDLVVVDLRLQFGWRSSPGWWSLAGGAI 636
            YNDLVVVDLRLQFGWRSSPGWWSLAGGAI
Sbjct:  119 YNDLVVVDLRLQFGWRSSPGWWSLAGGAI 147

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BLAST of jgi.p|Trimin1|163947 vs. uniprot
Match: A0A1B7WKV9_APHFL (Uncharacterized protein (Fragment) n=1 Tax=Aphanizomenon flos-aquae WA102 TaxID=1710896 RepID=A0A1B7WKV9_APHFL)

HSP 1 Score: 61.2 bits (147), Expect = 2.020e-7
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1

Query:  307 AKFRVVHDLS---ALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYND-LVVVDLRLQFGWRSSPGWWS 618
            +KFR+ HD S   +     SVN+     +  V   G  F  ++Y I  LRQ +P +RIL++K+D KSA+R++ L     +    Y D L+++ LR+ FG   +P  WS
Sbjct:   38 SKFRLTHDQSFNPSRTEKRSVNDRVDASQLTVARFGKAFSRLIYHISYLRQLYPDERILMTKVDWKSAYRRIHLRPSTAVKSCTYIDGLLLMALRMTFGGAPNPAQWS 145

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|163947 vs. uniprot

BLAST of jgi.p|Trimin1|163947 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9


Match Name	E-value	Identity	Description
A0A835YZC0_9STRA	3.490e-155	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A836CCV7_9STRA	5.250e-93	90.29	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZCS3_9STRA	1.480e-90	88.39	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CKZ7_9STRA	9.210e-80	98.33	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]
A0A835YMP6_9STRA	1.540e-24	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5JG94_9PHAE	6.790e-19	31.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JAY4_9PHAE	2.060e-17	36.09	C3H1-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A835YTQ8_9STRA	1.410e-9	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A1B7WKV9_APHFL	2.020e-7	35.19	Uncharacterized protein (Fragment) n=1 Tax=Aphaniz...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_28	contig	Contig_28:220602..221237 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|163947\|e_gw1.28.138.1
Max annot lvl	4776\|Peronosporales
EggNOG OGs	2977H@1\|root,2RE6Z@2759\|Eukaryota,3QF70@4776\|Peronosporales
Evalue	5.17e-12
Seed ortholog	67593.Physo132534
Hectar predicted targeting category	other localisation
TranscriptId	164269
Track	FilteredModels1
ProteinId	163947

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163947	gene_8978	Tribonema minus UTEX_B_3156	gene	Contig_28 220602..221237 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8978_1	exon_8978_1	Tribonema minus UTEX_B_3156	exon	Contig_28 220602..221237 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8978	CDS_8978	Tribonema minus UTEX_B_3156	CDS	Contig_28 220602..221237 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163947	Trimin1\|163947\|e_gw1.28.138.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_28 220602..221237 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_28:220602..221237-
coding sequence from alignment at Contig_28:220602..221237-

spliced messenger RNA

>mRNA_8978 ID=mRNA_8978|Name=jgi.p|Trimin1|163947|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=636bp|location=Sequence derived from alignment at Contig_28:220602..221237- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTTGCGGTTACAGCGTCTTTCTTTGGGTGCGGGGAGGGTTATCC
GCGGTTGCAGGAGCTGCTAGATGTGGTGGCGCACGGTGTGCCGGTGTCTG
TCAAACGGCAGGCAGATTTTGAGGCAGAATGGACAGTGTCACGTGGAAAT
TACCCCCTTGAGCCACGGCATGTGCCGGTGTTTGATTGCAAAGTCTTGGA
AGACATTGCTCTGGGTCGGTGCATTGTCATGCATGCTGCCATTGCCCGCA
TGTACTTCAGCACACGGTTGCACATCAACCCCGTGTTTGTGGTCGACGAG
GGTGCTGCAAAGTTTCGCGTGGTGCATGACTTGTCTGCTTTGCTACATGG
CGAGAGTGTCAACAATACCACGGTGTTTGAGGAGGCTCCTGTCGTGGGGT
GTGGGCATATATTTGAGGCGATGCTGTACAGGATATGGTCGTTACGGCAG
GCATGGCCACGCAAACGCATTTTGATTTCAAAGATGGACGTGAAGTCGGC
GTTTCGTCAGTTGGCGCTCGACGTAAGAGGCCCATTGCTCGGCTACAGGT
ACAATGATCTGGTGGTGGTGGACCTGCGGTTGCAGTTCGGTTGGCGGTCT
TCACCGGGGTGGTGGAGCCTGGCCGGCGGGGCGATA

protein sequence of jgi.p|Trimin1|163947

>Trimin1|163947|e_gw1.28.138.1 ID=Trimin1|163947|e_gw1.28.138.1|Name=jgi.p|Trimin1|163947|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=212bp
MVLAVTASFFGCGEGYPRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGN
YPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDE
GAAKFRVVHDLSALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQ
AWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRS
SPGWWSLAGGAI

mRNA from alignment at Contig_28:220602..221237-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8978 ID=mRNA_8978|Name=jgi.p|Trimin1|163947|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=636bp|location=Sequence derived from alignment at Contig_28:220602..221237- (Tribonema minus UTEX_B_3156 )
ATGGTGCTTGCGGTTACAGCGTCTTTCTTTGGGTGCGGGGAGGGTTATCC
GCGGTTGCAGGAGCTGCTAGATGTGGTGGCGCACGGTGTGCCGGTGTCTG
TCAAACGGCAGGCAGATTTTGAGGCAGAATGGACAGTGTCACGTGGAAAT
TACCCCCTTGAGCCACGGCATGTGCCGGTGTTTGATTGCAAAGTCTTGGA
AGACATTGCTCTGGGTCGGTGCATTGTCATGCATGCTGCCATTGCCCGCA
TGTACTTCAGCACACGGTTGCACATCAACCCCGTGTTTGTGGTCGACGAG
GGTGCTGCAAAGTTTCGCGTGGTGCATGACTTGTCTGCTTTGCTACATGG
CGAGAGTGTCAACAATACCACGGTGTTTGAGGAGGCTCCTGTCGTGGGGT
GTGGGCATATATTTGAGGCGATGCTGTACAGGATATGGTCGTTACGGCAG
GCATGGCCACGCAAACGCATTTTGATTTCAAAGATGGACGTGAAGTCGGC
GTTTCGTCAGTTGGCGCTCGACGTAAGAGGCCCATTGCTCGGCTACAGGT
ACAATGATCTGGTGGTGGTGGACCTGCGGTTGCAGTTCGGTTGGCGGTCT
TCACCGGGGTGGTGGAGCCTGGCCGGCGGGGCGATA

Coding sequence (CDS) from alignment at Contig_28:220602..221237-

>mRNA_8978 ID=mRNA_8978|Name=jgi.p|Trimin1|163947|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=636bp|location=Sequence derived from alignment at Contig_28:220602..221237- (Tribonema minus UTEX_B_3156 )
ATGGTGCTTGCGGTTACAGCGTCTTTCTTTGGGTGCGGGGAGGGTTATCC
GCGGTTGCAGGAGCTGCTAGATGTGGTGGCGCACGGTGTGCCGGTGTCTG
TCAAACGGCAGGCAGATTTTGAGGCAGAATGGACAGTGTCACGTGGAAAT
TACCCCCTTGAGCCACGGCATGTGCCGGTGTTTGATTGCAAAGTCTTGGA
AGACATTGCTCTGGGTCGGTGCATTGTCATGCATGCTGCCATTGCCCGCA
TGTACTTCAGCACACGGTTGCACATCAACCCCGTGTTTGTGGTCGACGAG
GGTGCTGCAAAGTTTCGCGTGGTGCATGACTTGTCTGCTTTGCTACATGG
CGAGAGTGTCAACAATACCACGGTGTTTGAGGAGGCTCCTGTCGTGGGGT
GTGGGCATATATTTGAGGCGATGCTGTACAGGATATGGTCGTTACGGCAG
GCATGGCCACGCAAACGCATTTTGATTTCAAAGATGGACGTGAAGTCGGC
GTTTCGTCAGTTGGCGCTCGACGTAAGAGGCCCATTGCTCGGCTACAGGT
ACAATGATCTGGTGGTGGTGGACCTGCGGTTGCAGTTCGGTTGGCGGTCT
TCACCGGGGTGGTGGAGCCTGGCCGGCGGGGCGATA