mRNA_89 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149133
Unique NamemRNA_89
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: A0A835YY08_9STRA (ULP_PROTEASE domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY08_9STRA)

HSP 1 Score: 363 bits (931), Expect = 3.630e-127
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1
Query:    1 RLRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLYKGMCDNGYERVKKWSTKAKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLPGVWTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQDD 522
            RLRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLYKGMCDNGYERVKKWSTKAKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLPGVWTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQDD
Sbjct:    1 RLRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLYKGMCDNGYERVKKWSTKAKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLPGVWTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQDD 174          
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: A0A835ZEF0_9STRA (ULP_PROTEASE domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEF0_9STRA)

HSP 1 Score: 320 bits (820), Expect = 3.070e-110
Identity = 153/174 (87.93%), Postives = 162/174 (93.10%), Query Frame = 1
Query:    1 RLRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLYKGMCDNGYERVKKWSTKAKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLPGVWTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQDD 522
            RLRPNEWLSGDVMTGYATLLNEREARRRAV+ RR RRHVFHSFLY GMC+NGYE VK+WSTKAKVDVFACSLLVFLCNVN  HWTVVVARM QRR+EYFDS GG G+AEM+ I SYLQ+EH DKKKSPLPGVWTRRSHGTSSPQQANGVDCGVFALTVAEY+V+DMPFDFRQDD
Sbjct:    1 RLRPNEWLSGDVMTGYATLLNEREARRRAVNDRRSRRHVFHSFLYAGMCNNGYEGVKRWSTKAKVDVFACSLLVFLCNVNGNHWTVVVARMRQRRIEYFDSNGGAGVAEMDMIRSYLQQEHLDKKKSPLPGVWTRRSHGTSSPQQANGVDCGVFALTVAEYVVEDMPFDFRQDD 174          
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: A0A835ZFD9_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFD9_9STRA)

HSP 1 Score: 143 bits (361), Expect = 5.740e-40
Identity = 61/122 (50.00%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  157 YERVKKWSTKAKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLPGVWTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQDD 522
            Y  VK+WSTKAK+DVF    ++F  N+  +HW + +  + ++R+EY DS+ GDGL  M+ +  Y + EHADKK SPL G+WTR S+  +SPQQ NG DCGVF L  A+Y++ ++P DF QDD
Sbjct:   77 YNNVKRWSTKAKLDVFEADKILFPHNIGNMHWCLAIVHVQEKRIEYMDSMSGDGLGAMSALFRYFKDEHADKKGSPLKGMWTRYSYRDTSPQQKNGCDCGVFTLPNADYVLGELPLDFHQDD 198          
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: A0A836CHU4_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.200e-34
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   94 PRRGRRHVFHSFLYKGMCDNGYER--VKKWSTKAKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLPGVWTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQD 519
            P+  R H F+S+    + +N Y    V++W+ KAKVD+F    ++   NV  +HW + V  + +RR++Y+DS+GG G   +N +E +L+ EH DKK +PL   WT+      +PQQ NG DCGVF    A+YI +D+P +F QD
Sbjct:   16 PQLRRSHFFNSYFLSKLTENSYNYPGVRRWTKKAKVDIFTLDKVIMPANVGNMHWCLAVIYVQERRIQYYDSMGGRGTTFLNALERWLEDEHKDKKGAPLGATWTKVPTIDGTPQQENGCDCGVFTCMFADYISEDLPLEFGQD 159          
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: A0A7S2PD21_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PD21_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.810e-32
Identity = 68/179 (37.99%), Postives = 98/179 (54.75%), Query Frame = 1
Query:    1 RLRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLYKGMCDNG----YERVKKWSTK-AKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLP-GVWTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQD 519
            RL+P +WL+ +V+  +   L  R+ +       R R H F SF    + D      Y+ VK+WS K A  DVFA   +VF  NV  +HWT  VA M +++++++DS+GG G   +N +  Y + EH DKKK+ L    W   S    +PQQ NG DCGVF    A+++  DMP  F Q+
Sbjct:   40 RLQPGQWLNDEVIHYFLLCLARRDEQMCKKDTNRKRSHFFKSFFVSKLMDEASGYRYQNVKRWSKKVAGKDVFALDKIVFPINVGGVHWTCAVAFMQEKKIQFYDSMGGGGQRYVNGLLRYFEDEHKDKKKASLDTSEWNLVSCQPDTPQQLNGFDCGVFTCMFADFLSRDMPLIFSQE 218          
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: A0A835YXA5_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXA5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.180e-31
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 1
Query:    1 RLRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLYK---GMCDNGYERVKKWSTKAKV--DVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLPGVWTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQDD 522
            RL    WL+ +V++ Y  LLNER+A+  A  P R   +  H+F      G      ER+ +  +K  V  DVF+    +   N+  +HW  +V    + R+EY DS+GG G+  M  + ++L+ EH  +K   LP  W   S+  ++PQQANG DCGVFA    ++I++ +PFDFRQDD
Sbjct:   27 RLEGTTWLNDEVISAYTWLLNERDAKYCAADPSRRPCYAMHTFFASTLHGSQSKTPERISRALSKYAVPLDVFSLDKWLVPINIGGMHWAAMVVHCQKMRVEYVDSMGGRGIEFMEGMLAFLKYEHRVRKGRELPPGWQMFSYQHTTPQQANGCDCGVFACITMDFIMEGLPFDFRQDD 205          
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: A0A7S2V080_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V080_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.580e-30
Identity = 66/178 (37.08%), Postives = 94/178 (52.81%), Query Frame = 1
Query:    4 LRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHS--FLYKGMCDNGYE--RVKKWSTKAKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLP-GVWTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQDD 522
            L P  WL  +V+  Y  LL +RE R  A   R   R VF +  F+ +   D GY    V++W+ + K+DVF+   +V   NV  +HW +    + Q+R++Y+DS+GG G   +  +  YLQ E  DKKK  L    W        +PQQ NG DCGVFA   A+Y+ + +P  F Q D
Sbjct:   74 LEPTVWLLDEVINLYINLLEDREKRHMAESGRTTPRAVFMNSFFMARLFVDEGYRYANVRRWTRRRKLDVFSAERVVVPVNVGNMHWCLACVHVPQKRIQYYDSMGGAGRNYLGALAQYLQDEMKDKKKETLDINDWEMVGTVQGTPQQNNGCDCGVFACMFADYVSEGLPLSFSQKD 251          
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: A0A1Z5KAR9_FISSO (Sentrin-specific protease 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAR9_FISSO)

HSP 1 Score: 120 bits (300), Expect = 1.800e-28
Identity = 66/185 (35.68%), Postives = 94/185 (50.81%), Query Frame = 1
Query:    4 LRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLYKGMCDNG-----------YERVKKWSTKAK-VDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLPGV--WTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQ 516
            LRP  WL+ +V+  +  +L  R+       P+R R H F SF    + + G           Y  VK+WS K    D+F    ++F  N N +HW   V  M  +R++++DS+GGDG   +N +  YL+ EH DKKK PLP    W      + +P+Q NG DCGVF    A++I  D P  F Q
Sbjct:  357 LRPGGWLTDEVIHFFYVMLARRDEEMCKQDPQRKRSHFFKSFFITSLLNEGHANPAKNGTYEYRNVKRWSKKVPGKDIFDLDKIIFPINQNNMHWVCSVIFMQAKRIQFYDSMGGDGCRYLNALFQYLKDEHQDKKKCPLPDEDEWEFIECTSDTPRQRNGFDCGVFTCMFADFISKDCPLLFDQ 541          
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: D8LMK6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK6_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 8.790e-27
Identity = 71/183 (38.80%), Postives = 99/183 (54.10%), Query Frame = 1
Query:    4 LRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLY---KGM-CDNGYERVKKWSTKAKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPL---PGVWTRRSHGT---SSPQQANGVDCGVFALTVAEYIVDDMPFDFRQDD 522
            LRP  WL+ +V+  Y  LL+ R+      +P R + H F SF     KGM C   Y  VK+W+ + KV  F    +    NV+  HW + V  + Q+R+ Y+DS+GG G +    +  +L+ E  DK        P  WT  + GT   S+PQQ NG DCG FA++ A Y+ DD+PFDFRQ D
Sbjct:  383 LRPYTWLNDEVVNMYMQLLSCRDKELCKANPSRRQSHFFTSFFLTKLKGMDCKYNYTGVKRWTRRVKV--FEMDKIFVPVNVSNAHWCMAVIFVQQKRINYYDSMGGGGKSVREDLLLWLEDEDEDKNGDNATFEPDDWT--TVGTKVASTPQQENGSDCGAFAVSFASYLSDDLPFDFRQAD 561          
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Match: A0A7S3Q661_9STRA (Hypothetical protein n=4 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q661_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.890e-25
Identity = 63/181 (34.81%), Postives = 89/181 (49.17%), Query Frame = 1
Query:    4 LRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLYKGMCDNG------YERVKKWSTK-AKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFDSLGGDGLAEMNTIESYLQREHADKKKSPLPGV--WTRRSHGTSSPQQANGVDCGVFALTVAEYIVDDMPFDFRQD 519
            LR   WL+ +V+  +  +L++R+    A    R R H F SF +  + D G      Y  VK+WS + A  D+FA   + F CNVN +HWT  V  M ++R++YFDS+ GDG      +  Y+  E   KK    P    W         P Q NG DCGVF    A+++  D P  F Q+
Sbjct:  311 LRTGTWLNDEVIHYFFLMLSKRDEALCATDSSRKRSHYFKSFFFTKLFDEGGTNEYRYANVKRWSRRVAGKDIFALDKIFFACNVNGMHWTCAVIFMQEKRIQYFDSMRGDGYMYSEGLLKYIMDEWKTKKGGSFPDADKWKIIGSKGDVPTQRNGFDCGVFTCMFADFLSLDRPLSFTQE 491          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149133 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YY08_9STRA3.630e-127100.00ULP_PROTEASE domain-containing protein (Fragment) ... [more]
A0A835ZEF0_9STRA3.070e-11087.93ULP_PROTEASE domain-containing protein (Fragment) ... [more]
A0A835ZFD9_9STRA5.740e-4050.00ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
A0A836CHU4_9STRA1.200e-3440.28ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
A0A7S2PD21_9STRA3.810e-3237.99Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A835YXA5_9STRA2.180e-3137.43ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
A0A7S2V080_9STRA6.580e-3037.08Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1Z5KAR9_FISSO1.800e-2835.68Sentrin-specific protease 1 n=2 Tax=Fistulifera so... [more]
D8LMK6_ECTSI8.790e-2738.80ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A7S3Q661_9STRA2.890e-2534.81Hypothetical protein n=4 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:465508..466029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149133|gw1.3.355.1
BRITEko00000,ko01000,ko01002,ko04121
KEGG koko:K08592
EC3.4.22.68
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005912,GO:0005924,GO:0005925,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006807,GO:0006915,GO:0006919,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008234,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0012505,GO:0016020,GO:0016787,GO:0016925,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0023052,GO:0030054,GO:0030055,GO:0030162,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0036211,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045862,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070161,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0097190,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000116,GO:2001056,GO:2001141
DescriptionUlp1 protease family, C-terminal catalytic domain-containing protein
COG categoryO
Max annot lvl5794|Apicomplexa
EggNOG OGsCOG5160@1|root,KOG0778@2759|Eukaryota,3YAQ3@5794|Apicomplexa,3YMYV@5796|Coccidia,3YRM1@5809|Sarcocystidae
Evalue1.62e-28
Seed ortholog99158.XP_008886742.1
Hectar predicted targeting categoryother localisation
TranscriptId149455
TrackFilteredModels1
ProteinId149133
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149133gene_89Tribonema minus UTEX_B_3156 geneContig_3 465508..466029 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_89_1exon_89_1Tribonema minus UTEX_B_3156 exonContig_3 465508..466029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_89CDS_89Tribonema minus UTEX_B_3156 CDSContig_3 465508..466029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149133Trimin1|149133|gw1.3.355.1Tribonema minus UTEX_B_3156 polypeptideContig_3 465508..466029 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_89 ID=mRNA_89|Name=jgi.p|Trimin1|149133|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_3:465508..466029+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCCTGCGACCGAACGAGTGGCTCTCTGGTGATGTGATGACCGGTTACGC
TACTCTGTTGAATGAGAGGGAGGCCAGGCGTCGTGCGGTCCACCCTCGCA
GGGGCCGGCGTCACGTCTTCCACTCCTTCTTGTACAAAGGGATGTGCGAT
AACGGGTACGAACGGGTCAAGAAGTGGTCGACGAAAGCGAAGGTGGACGT
CTTCGCCTGCAGTCTCCTCGTATTTCTGTGCAATGTGAATAGGATCCACT
GGACCGTCGTGGTGGCACGGATGGCGCAGCGTCGCTTGGAATACTTCGAC
TCGCTCGGCGGAGATGGGTTAGCGGAGATGAACACGATCGAGAGCTACTT
GCAGCGAGAGCACGCGGACAAGAAGAAGAGTCCGCTGCCGGGCGTGTGGA
CGAGGCGCTCGCACGGCACCAGCAGTCCTCAGCAGGCCAACGGCGTTGAC
TGCGGCGTCTTCGCCCTGACCGTCGCCGAGTACATCGTGGATGATATGCC
TTTCGACTTTCGACAGGACGAT
back to top

protein sequence of jgi.p|Trimin1|149133

>Trimin1|149133|gw1.3.355.1 ID=Trimin1|149133|gw1.3.355.1|Name=jgi.p|Trimin1|149133|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=174bp
RLRPNEWLSGDVMTGYATLLNEREARRRAVHPRRGRRHVFHSFLYKGMCD
NGYERVKKWSTKAKVDVFACSLLVFLCNVNRIHWTVVVARMAQRRLEYFD
SLGGDGLAEMNTIESYLQREHADKKKSPLPGVWTRRSHGTSSPQQANGVD
CGVFALTVAEYIVDDMPFDFRQDD
back to top

mRNA from alignment at Contig_3:465508..466029+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_89 ID=mRNA_89|Name=jgi.p|Trimin1|149133|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_3:465508..466029+ (Tribonema minus UTEX_B_3156 )
CGCCTGCGACCGAACGAGTGGCTCTCTGGTGATGTGATGACCGGTTACGC TACTCTGTTGAATGAGAGGGAGGCCAGGCGTCGTGCGGTCCACCCTCGCA GGGGCCGGCGTCACGTCTTCCACTCCTTCTTGTACAAAGGGATGTGCGAT AACGGGTACGAACGGGTCAAGAAGTGGTCGACGAAAGCGAAGGTGGACGT CTTCGCCTGCAGTCTCCTCGTATTTCTGTGCAATGTGAATAGGATCCACT GGACCGTCGTGGTGGCACGGATGGCGCAGCGTCGCTTGGAATACTTCGAC TCGCTCGGCGGAGATGGGTTAGCGGAGATGAACACGATCGAGAGCTACTT GCAGCGAGAGCACGCGGACAAGAAGAAGAGTCCGCTGCCGGGCGTGTGGA CGAGGCGCTCGCACGGCACCAGCAGTCCTCAGCAGGCCAACGGCGTTGAC TGCGGCGTCTTCGCCCTGACCGTCGCCGAGTACATCGTGGATGATATGCC TTTCGACTTTCGACAGGACGAT
back to top

Coding sequence (CDS) from alignment at Contig_3:465508..466029+

>mRNA_89 ID=mRNA_89|Name=jgi.p|Trimin1|149133|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=522bp|location=Sequence derived from alignment at Contig_3:465508..466029+ (Tribonema minus UTEX_B_3156 )
CGCCTGCGACCGAACGAGTGGCTCTCTGGTGATGTGATGACCGGTTACGC
TACTCTGTTGAATGAGAGGGAGGCCAGGCGTCGTGCGGTCCACCCTCGCA
GGGGCCGGCGTCACGTCTTCCACTCCTTCTTGTACAAAGGGATGTGCGAT
AACGGGTACGAACGGGTCAAGAAGTGGTCGACGAAAGCGAAGGTGGACGT
CTTCGCCTGCAGTCTCCTCGTATTTCTGTGCAATGTGAATAGGATCCACT
GGACCGTCGTGGTGGCACGGATGGCGCAGCGTCGCTTGGAATACTTCGAC
TCGCTCGGCGGAGATGGGTTAGCGGAGATGAACACGATCGAGAGCTACTT
GCAGCGAGAGCACGCGGACAAGAAGAAGAGTCCGCTGCCGGGCGTGTGGA
CGAGGCGCTCGCACGGCACCAGCAGTCCTCAGCAGGCCAACGGCGTTGAC
TGCGGCGTCTTCGCCCTGACCGTCGCCGAGTACATCGTGGATGATATGCC
TTTCGACTTTCGACAGGACGAT
back to top