mRNA_8870 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349820
Unique NamemRNA_8870
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349820 vs. uniprot
Match: A0A836CAW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW6_9STRA)

HSP 1 Score: 353 bits (905), Expect = 1.060e-122
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 2 
Query:   17 MLRRSLVALSSKIPKDGPAPASASRWRPPSRSKNEDLRKSVSFDGVVAAVAPTSRPRFTIGRDQFHFLLYILPAGLVYVLYVRKYEEPEEQKHALLEQRYGDLVRHSKDRRQAFDKHFKHLEAERDDLLSSNMDDLLHAGVRSKSQEEVKRKPKVRRLDVEAERFAAQAPAPPATVKTGQDAPAAQ 574
            MLRRSLVALSSKIPKDGPAPASASRWRPPSRSKNEDLRKSVSFDGVVAAVAPTSRPRFTIGRDQFHFLLYILPAGLVYVLYVRKYEEPEEQKHALLEQRYGDLVRHSKDRRQAFDKHFKHLEAERDDLLSSNMDDLLHAGVRSKSQEEVKRKPKVRRLDVEAERFAAQAPAPPATVKTGQDAPAAQ
Sbjct:    1 MLRRSLVALSSKIPKDGPAPASASRWRPPSRSKNEDLRKSVSFDGVVAAVAPTSRPRFTIGRDQFHFLLYILPAGLVYVLYVRKYEEPEEQKHALLEQRYGDLVRHSKDRRQAFDKHFKHLEAERDDLLSSNMDDLLHAGVRSKSQEEVKRKPKVRRLDVEAERFAAQAPAPPATVKTGQDAPAAQ 186
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349820 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CAW6_9STRA1.060e-122100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_50contigContig_50:76587..77911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349820|estExt_Genemark1.C_Ctg_500012
Hectar predicted targeting categorysignal anchor
TranscriptId350142
TrackFilteredModels1
ProteinId349820
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349820gene_8870Tribonema minus UTEX_B_3156 geneContig_50 76587..77911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349820Trimin1|349820|estExt_Genemark1.C_Ctg_500012Tribonema minus UTEX_B_3156 polypeptideContig_50 76587..77895 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8870_2exon_8870_2Tribonema minus UTEX_B_3156 exonContig_50 76587..76607 -
exon_8870_1exon_8870_1Tribonema minus UTEX_B_3156 exonContig_50 77356..77911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8870CDS_8870Tribonema minus UTEX_B_3156 CDSContig_50 77356..77895 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_8870UTR5_8870Tribonema minus UTEX_B_3156 five_prime_UTRContig_50 77896..77911 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8870 ID=mRNA_8870|Name=jgi.p|Trimin1|349820|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=577bp|location=Sequence derived from alignment at Contig_50:76587..77911- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCCTCCCCTTACAGAATGTTGCGACGAAGCTTGGTGGCGCTGAGCAGTA
AGATCCCCAAGGACGGGCCAGCGCCAGCCTCGGCATCCCGCTGGCGGCCA
CCTAGCCGCAGCAAGAACGAGGACCTCCGCAAAAGTGTCTCCTTTGATGG
CGTAGTGGCGGCTGTCGCGCCAACATCCCGACCGCGTTTTACCATCGGCC
GGGATCAGTTTCACTTCCTTTTGTACATACTGCCCGCTGGCCTGGTGTAC
GTTCTCTACGTCCGGAAGTACGAAGAGCCGGAGGAGCAGAAGCACGCGCT
TCTAGAGCAGAGGTACGGTGACCTGGTACGACACAGCAAGGACAGGAGGC
AGGCCTTCGACAAGCACTTCAAGCACCTCGAAGCGGAGAGAGATGACTTG
CTCAGCAGCAACATGGACGACTTGCTGCATGCCGGGGTGAGGAGCAAGTC
ACAGGAGGAGGTCAAGAGGAAGCCCAAAGTGAGGCGGCTCGACGTCGAAG
CGGAGCGGTTTGCTGCGCAAGCGCCGGCGCCGCCGGCCACAGTCAAGACT
GGACAGGACGCGCCGGCGGCCCAGTGA
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protein sequence of jgi.p|Trimin1|349820

>Trimin1|349820|estExt_Genemark1.C_Ctg_500012 ID=Trimin1|349820|estExt_Genemark1.C_Ctg_500012|Name=jgi.p|Trimin1|349820|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp
MLRRSLVALSSKIPKDGPAPASASRWRPPSRSKNEDLRKSVSFDGVVAAV
APTSRPRFTIGRDQFHFLLYILPAGLVYVLYVRKYEEPEEQKHALLEQRY
GDLVRHSKDRRQAFDKHFKHLEAERDDLLSSNMDDLLHAGVRSKSQEEVK
RKPKVRRLDVEAERFAAQAPAPPATVKTGQDAPAAQ*
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mRNA from alignment at Contig_50:76587..77911-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8870 ID=mRNA_8870|Name=jgi.p|Trimin1|349820|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1325bp|location=Sequence derived from alignment at Contig_50:76587..77911- (Tribonema minus UTEX_B_3156 )
GTCCTCCCCTTACAGAATGTTGCGACGAAGCTTGGTGGCGCTGAGCAGTA
AGATCCCCAAGGACGGGCCAGCGCCAGCCTCGGCATCCCGCTGGCGGCCA
CCTAGCCGCAGCAAGAACGAGGACCTCCGCAAAAGTGTCTCCTTTGATGG
CGTAGTGGCGGCTGTCGCGCCAACATCCCGACCGCGTTTTACCATCGGCC
GGGATCAGTTTCACTTCCTTTTGTACATACTGCCCGCTGGCCTGGTGTAC
GTTCTCTACGTCCGGAAGTACGAAGAGCCGGAGGAGCAGAAGCACGCGCT
TCTAGAGCAGAGGTACGGTGACCTGGTACGACACAGCAAGGACAGGAGGC
AGGCCTTCGACAAGCACTTCAAGCACCTCGAAGCGGAGAGAGATGACTTG
CTCAGCAGCAACATGGACGACTTGCTGCATGCCGGGGTGAGGAGCAAGTC
ACAGGAGGAGGTCAAGAGGAAGCCCAAAGTGAGGCGGCTCGACGTCGAAG
CGGAGCGGTTTGCTGCGCAAGCGCCGGCGCCGCCGGCCACAGTCAAGACT
GGACAGGTAGCGGCAGCGACGACAGCAAACGCAGCGGGCGCACAGGGTAG
CAATGAAGTTGGCGGCGGCATTAGCGACGCCTCGGAGCAGCAGGGATCAG
GTGGCCGGCGGTGGTTGCCCTGGAACTGGTTCAGGCGTGCATGACGTCAT
GGCAGGCAGGCTAGTGCGCTGCATTGTCAATATTTAATCTGAAAATTTGC
CTACACTGTGCCAGTGGTGTCTGGTTTTGCGGCGCGTATCCTCTTGTACC
ATCGTTCGGACCCTGCTGTGATCACAAGCGTGTCCTCTATATGTTCCTTG
AAGTCAACTACTTCCAAGTATACATTGACCAAGAATGACCATGCATGTTT
GCATTGCTGAATTTGCCTCTTTCAAGGAGTGTGCTCTCATGCGGTGGGTG
CAGAGCAGGACAACGATGCAGCAGTGCACACACACGTCGAGTCCAGCGTC
TTCTGTCAGCGGGTGTGTATTGCTGAACTGGTGCACGAATGCACTTCCTG
CTTTTGTATAGTGATGCTGTATAGTCTAGTGCACTAGTGTGGGTTCTGTT
GTTGAAGTGTGTGATGGCATGTGCCGTGGTTATACCCTGTGTCTATGCCT
GCAATATCACAAATGGAGCATGGTAGCACTCAATATTATGGTGTACCTCA
AGACCCGGCCTGCACTACAAATGGCAAATCCCTTTGCTGCAGCAGCAAGC
ACCGCAAAACTTTGAGTCTGTCGCGGCTTAGACTCCTGTGCTGCTTCCCG
CGAGGACGCGCCGGCGGCCCAGTGA
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Coding sequence (CDS) from alignment at Contig_50:76587..77911-

>mRNA_8870 ID=mRNA_8870|Name=jgi.p|Trimin1|349820|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_50:76587..77911- (Tribonema minus UTEX_B_3156 )
ATGTTGCGACGAAGCTTGGTGGCGCTGAGCAGTAAGATCCCCAAGGACGG
GCCAGCGCCAGCCTCGGCATCCCGCTGGCGGCCACCTAGCCGCAGCAAGA
ACGAGGACCTCCGCAAAAGTGTCTCCTTTGATGGCGTAGTGGCGGCTGTC
GCGCCAACATCCCGACCGCGTTTTACCATCGGCCGGGATCAGTTTCACTT
CCTTTTGTACATACTGCCCGCTGGCCTGGTGTACGTTCTCTACGTCCGGA
AGTACGAAGAGCCGGAGGAGCAGAAGCACGCGCTTCTAGAGCAGAGGTAC
GGTGACCTGGTACGACACAGCAAGGACAGGAGGCAGGCCTTCGACAAGCA
CTTCAAGCACCTCGAAGCGGAGAGAGATGACTTGCTCAGCAGCAACATGG
ACGACTTGCTGCATGCCGGGGTGAGGAGCAAGTCACAGGAGGAGGTCAAG
AGGAAGCCCAAAGTGAGGCGGCTCGACGTCGAAGCGGAGCGGTTTGCTGC
GCAAGCGCCGGCGCCGCCGGCCACAGTCAAGACTGGACAGGACGCGCCGG
CGGCCCAGTGA
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