mRNA_8845 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349922
Unique NamemRNA_8845
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|349922 vs. uniprot
Match: A0A835YQI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQI8_9STRA)

HSP 1 Score: 874 bits (2258), Expect = 2.560e-315
Identity = 595/595 (100.00%), Postives = 595/595 (100.00%), Query Frame = 1 
Query:    1 MLGAPAAYPAAAVALDDCANMFSEQVSLGQGFLPRLTGVLNFKPARRAAPSKKSRPVASGPVSNAPPRHPHTHMLVLARESGEVLLLDAAGHAVLTFDAGHGGTPLLSIACDAAGEAVIATAAADGSVCAHRLRAWLWGTQLAGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQLPEASPLGLAAALRRTVALRAARSDPHGSSGSAADGTQCAADDGAAAXAAAPLPLQRPMHAFQHMLHGKLVAIAGSGXXXXXXXSDLLFYSATNGTLLARAVLATAHPITALAFSTPYIAAAAGPDVYVLNTWRLPSPAAPHETPHEPCICRAPPARGSTATSLTFDALSAGTLFAGTSGGETHVFGVRVRGAAXXXXXXXXXXXXXXXXXXXXAPVANLAATPGYLIAATGGLLTAYNTTDMMREGVRRECAWRAAAAGPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDALLPYAPRAPLDLRWARLPAMAAALVAVLAYHVVCRGXXXXXXXXXXXXXXXXXXXXXGGVNASVYRGVEQSLHGLDRRIEGLQGRGRGGAGGRWEGGALRRRGRDVDDLDWDK 1785
            MLGAPAAYPAAAVALDDCANMFSEQVSLGQGFLPRLTGVLNFKPARRAAPSKKSRPVASGPVSNAPPRHPHTHMLVLARESGEVLLLDAAGHAVLTFDAGHGGTPLLSIACDAAGEAVIATAAADGSVCAHRLRAWLWGTQLAGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQLPEASPLGLAAALRRTVALRAARSDPHGSSGSAADGTQCAADDGAAAXAAAPLPLQRPMHAFQHMLHGKLVAIAGSGXXXXXXXSDLLFYSATNGTLLARAVLATAHPITALAFSTPYIAAAAGPDVYVLNTWRLPSPAAPHETPHEPCICRAPPARGSTATSLTFDALSAGTLFAGTSGGETHVFGVRVRGAAXXXXXXXXXXXXXXXXXXXXAPVANLAATPGYLIAATGGLLTAYNTTDMMREGVRRECAWRAAAAGPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDALLPYAPRAPLDLRWARLPAMAAALVAVLAYHVVCRGXXXXXXXXXXXXXXXXXXXXXGGVNASVYRGVEQSLHGLDRRIEGLQGRGRGGAGGRWEGGALRRRGRDVDDLDWDK
Sbjct:    1 MLGAPAAYPAAAVALDDCANMFSEQVSLGQGFLPRLTGVLNFKPARRAAPSKKSRPVASGPVSNAPPRHPHTHMLVLARESGEVLLLDAAGHAVLTFDAGHGGTPLLSIACDAAGEAVIATAAADGSVCAHRLRAWLWGTQLAGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQLPEASPLGLAAALRRTVALRAARSDPHGSSGSAADGTQCAADDGAAAXAAAPLPLQRPMHAFQHMLHGKLVAIAGSGXXXXXXXSDLLFYSATNGTLLARAVLATAHPITALAFSTPYIAAAAGPDVYVLNTWRLPSPAAPHETPHEPCICRAPPARGSTATSLTFDALSAGTLFAGTSGGETHVFGVRVRGAAXXXXXXXXXXXXXXXXXXXXAPVANLAATPGYLIAATGGLLTAYNTTDMMREGVRRECAWRAAAAGPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDALLPYAPRAPLDLRWARLPAMAAALVAVLAYHVVCRGXXXXXXXXXXXXXXXXXXXXXGGVNASVYRGVEQSLHGLDRRIEGLQGRGRGGAGGRWEGGALRRRGRDVDDLDWDK 595
[Close]
BLAST of jgi.p|Trimin1|349922 vs. uniprot
Match: A0A835YT76_9STRA (DH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT76_9STRA)

HSP 1 Score: 330 bits (847), Expect = 4.550e-113
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 2 
Query:  173 MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR 703
            MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR
Sbjct:    1 MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR 177
[Close]
BLAST of jgi.p|Trimin1|349922 vs. uniprot
Match: A0A835Z4U4_9STRA (DH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U4_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.150e-56
Identity = 110/134 (82.09%), Postives = 110/134 (82.09%), Query Frame = 2 
Query:  173 MVRTTGRLVFGGSGPATEQQDDDDKLQQLTKEEGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNR 574
            MV TTGRLVFGGSGPA EQQDDDDKLQQL KEEGNRSKAVAELLSTEKTFVSEMT                     LLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNR
Sbjct:    1 MVTTTGRLVFGGSGPA-EQQDDDDKLQQLAKEEGNRSKAVAELLSTEKTFVSEMT---------------------LLVEVFLEPLRRYGAELAAEAEAAAEDRADAGKARLAVTPEDLTVIFSNVEQLLGFNR 112
[Close]
BLAST of jgi.p|Trimin1|349922 vs. uniprot
Match: D8LKY8_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 7.060e-8
Identity = 63/201 (31.34%), Postives = 83/201 (41.29%), Query Frame = 2 
Query:  269 EGNRSKAVAELLSTEKTFVSEMTAAVLVLQQGLVPFAAAHTRFHLLVEVFLEPLRRYGAELAAEAEAAAEDRADAG---KARLA--VTPEDLTVIFSNVEQLLGFNRSFLADLEAA----MAAGGQGAV-----------------------------------------------VEVFLKAAPFMRMFSVYVNNFDRAR 703
            E  R +AVAELLS+E  +VS++                      LLV+VFL PL+R+  EL A+ +   +  A  G   +AR A   T  D   IF+N  +L  FNR FL DL  A       G  G V                                               ++VFLK+APF++M+S YVNNFD AR
Sbjct:    7 ERRRDEAVAELLSSEAEYVSDLK---------------------LLVDVFLLPLQRWAKELEAQQDPVLDHAAVHGGSIQARSAPSFTQADCKEIFANTLELAHFNRQFLLDLRKAHGGPFVPGSVGVVSPVSTSTECNEWRKVTSAGRDCLEGEDIGDPLRPTSPNISEKGPRQMLQVFLKSAPFLKMYSEYVNNFDTAR 186
[Close]
BLAST of jgi.p|Trimin1|349922 vs. uniprot
Match: A0A835Z6E2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-7
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  512 VTPEDLTVIFSNVEQLLGFNRSFLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFD 694
            VT  +L  +FSN EQ+  FNR  L DLE A   GG  A+++  LKAAPF +M+  +V NF+
Sbjct:  172 VTRAELLSVFSNTEQIAAFNRQLLLDLERARRDGGNKAMLDQLLKAAPFFKMYGTFVRNFE 232
[Close]
BLAST of jgi.p|Trimin1|349922 vs. uniprot
Match: A0A4P9ZJB8_9FUNG (Dbl homology domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZJB8_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 7.080e-6
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 2 
Query:  491 AGKARLAVTPEDLTVIFSNVEQLLGFNRS-FLADLEAAMAAGGQGAVVEVFLKAAPFMRMFSVYVNNFDRAR*VFHDNESLR 733
            A K R  ++P ++  IF NV+ +L F+R   L +LE  +    +  V +VFL+ A F+R++SVYVNNFD A  +  D E  R
Sbjct:  302 ATKFRGVLSPVEMKTIFGNVDTILMFHRDHILPELEQTIRDDAKARVGKVFLRNAAFIRIYSVYVNNFDHAAQLLTDLEKSR 383
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349922 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQI8_9STRA2.560e-315100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
BLAST of jgi.p|Trimin1|349922 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YT76_9STRA4.550e-113100.00DH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A835Z4U4_9STRA1.150e-5682.09DH domain-containing protein (Fragment) n=1 Tax=Tr... [more]
D8LKY8_ECTSI7.060e-831.34Pleckstrin homology (PH) domain-containing protein... [more]
A0A835Z6E2_9STRA1.620e-747.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4P9ZJB8_9FUNG7.080e-640.24Dbl homology domain-containing protein n=1 Tax=Dim... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_51contigContig_51:809741..811528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349922|estExt_Genemark1.C_Ctg_510083
Hectar predicted targeting categoryother localisation
TranscriptId350244
TrackFilteredModels1
ProteinId349922
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349922gene_8845Tribonema minus UTEX_B_3156 geneContig_51 809741..811528 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8845_1exon_8845_1Tribonema minus UTEX_B_3156 exonContig_51 809741..811528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8845CDS_8845Tribonema minus UTEX_B_3156 CDSContig_51 809741..811528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349922Trimin1|349922|estExt_Genemark1.C_Ctg_510083Tribonema minus UTEX_B_3156 polypeptideContig_51 809741..811528 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8845 ID=mRNA_8845|Name=jgi.p|Trimin1|349922|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1788bp|location=Sequence derived from alignment at Contig_51:809741..811528- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGCGCGCCGGCCGCTTATCCTGCCGCAGCAGTGGCTCTGGACGA
CTGCGCCAACATGTTCAGCGAGCAGGTGTCCCTCGGGCAAGGCTTCCTTC
CACGCCTGACGGGAGTGCTGAACTTCAAGCCTGCGCGCCGCGCGGCGCCT
TCCAAAAAATCCAGGCCTGTCGCCAGCGGGCCCGTCTCTAACGCGCCGCC
GCGGCACCCGCACACGCACATGCTGGTACTGGCGAGGGAGAGCGGCGAGG
TTCTGCTCCTCGACGCTGCGGGCCACGCAGTCCTGACGTTCGACGCCGGG
CACGGCGGCACGCCCCTGCTCAGCATCGCCTGCGACGCCGCCGGGGAGGC
GGTCATCGCCACCGCCGCCGCCGACGGCTCCGTTTGTGCGCACCGCCTCC
GCGCGTGGCTGTGGGGCACGCAGCTCGCGGGCGCTGCCGCCGGCAGGCGC
GCGCCACCGAGCGCTGCTGCTGCCTCTGTATCATTGAGCCAGCAGCCACA
GGACGGCCAACCGGGCGGTCAACAAGCGGGTGCAGAGGAGGAGGAGGAGG
AGGAAGTGCAGCTGCCTGAGGCATCGCCGCTGGGCTTGGCTGCCGCGCTG
CGGCGAACGGTGGCGCTGCGCGCGGCGCGCAGCGACCCTCACGGCAGCAG
CGGCAGTGCTGCGGACGGCACTCAGTGTGCAGCGGACGACGGTGCTGCAG
CAGCAGCAGCAGCGCCGCTGCCATTGCAGCGCCCCATGCACGCGTTCCAG
CATATGTTGCACGGCAAGCTTGTGGCGATTGCTGGCAGCGGCGGCGGCAG
CGGCGGCGGCGGCAGCGACCTGCTCTTCTACAGCGCCACCAACGGCACTC
TGCTCGCGCGAGCCGTTCTCGCCACTGCGCACCCCATCACGGCACTCGCC
TTCAGCACCCCCTACATCGCCGCCGCCGCGGGCCCAGATGTTTATGTGCT
CAACACCTGGCGCCTGCCCTCGCCGGCGGCGCCGCACGAGACACCACACG
AGCCCTGCATCTGCCGCGCGCCGCCTGCGCGGGGTTCAACCGCCACATCG
CTGACCTTCGATGCGCTGTCGGCGGGAACGCTCTTCGCGGGCACCAGCGG
CGGCGAAACGCATGTGTTTGGCGTGCGCGTCCGCGGCGCCGCCGCCGCCG
CCGCCCACTGCTGCCGGCTGCTGGAGACGCTGCCGCCGGCGGCGGGCGGC
GGCGCGCCCGTCGCCAACCTCGCGGCGACGCCGGGCTACCTCATCGCCGC
GACGGGCGGCCTGCTTACCGCGTACAACACCACGGACATGATGCGCGAGG
GCGTGCGGCGCGAGTGCGCGTGGCGCGCGGCGGCGGCGGGGCCCATGGCG
GTCGCCGCGGCGGCGCCGCCCGCCGGCGCGGCGGCGCGCCGCGTGGCGCT
GCTCGTCGTTGCCGGCGCCTCCGGCGCCGCCGCCGCCGTGGACGCGCTGC
TGCCGTACGCGCCGCGCGCGCCGCTGGACCTGCGCTGGGCGCGCCTGCCG
GCGATGGCGGCGGCGCTCGTGGCAGTGCTCGCGTACCACGTCGTGTGCAG
AGGCGGCGGCGGCGGCGGCGGCGCGAAGCACGCGTCGAGCAGGAGCCGGC
GGCGCCAGGACGCGGGCGGCGGCGTGAATGCGAGCGTGTACAGGGGTGTG
GAGCAGTCGCTTCACGGGCTGGATAGGAGGATCGAGGGGCTGCAGGGGCG
GGGGAGGGGGGGAGCGGGCGGTCGGTGGGAGGGGGGCGCGCTGCGGCGTC
GCGGCCGCGACGTCGATGACCTAGACTGGGACAAATGA
back to top

protein sequence of jgi.p|Trimin1|349922

>Trimin1|349922|estExt_Genemark1.C_Ctg_510083 ID=Trimin1|349922|estExt_Genemark1.C_Ctg_510083|Name=jgi.p|Trimin1|349922|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=596bp
MLGAPAAYPAAAVALDDCANMFSEQVSLGQGFLPRLTGVLNFKPARRAAP
SKKSRPVASGPVSNAPPRHPHTHMLVLARESGEVLLLDAAGHAVLTFDAG
HGGTPLLSIACDAAGEAVIATAAADGSVCAHRLRAWLWGTQLAGAAAGRR
APPSAAAASVSLSQQPQDGQPGGQQAGAEEEEEEEVQLPEASPLGLAAAL
RRTVALRAARSDPHGSSGSAADGTQCAADDGAAAAAAAPLPLQRPMHAFQ
HMLHGKLVAIAGSGGGSGGGGSDLLFYSATNGTLLARAVLATAHPITALA
FSTPYIAAAAGPDVYVLNTWRLPSPAAPHETPHEPCICRAPPARGSTATS
LTFDALSAGTLFAGTSGGETHVFGVRVRGAAAAAAHCCRLLETLPPAAGG
GAPVANLAATPGYLIAATGGLLTAYNTTDMMREGVRRECAWRAAAAGPMA
VAAAAPPAGAAARRVALLVVAGASGAAAAVDALLPYAPRAPLDLRWARLP
AMAAALVAVLAYHVVCRGGGGGGGAKHASSRSRRRQDAGGGVNASVYRGV
EQSLHGLDRRIEGLQGRGRGGAGGRWEGGALRRRGRDVDDLDWDK*
back to top

mRNA from alignment at Contig_51:809741..811528-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8845 ID=mRNA_8845|Name=jgi.p|Trimin1|349922|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1788bp|location=Sequence derived from alignment at Contig_51:809741..811528- (Tribonema minus UTEX_B_3156 )
ATGCTCGGCGCGCCGGCCGCTTATCCTGCCGCAGCAGTGGCTCTGGACGA
CTGCGCCAACATGTTCAGCGAGCAGGTGTCCCTCGGGCAAGGCTTCCTTC
CACGCCTGACGGGAGTGCTGAACTTCAAGCCTGCGCGCCGCGCGGCGCCT
TCCAAAAAATCCAGGCCTGTCGCCAGCGGGCCCGTCTCTAACGCGCCGCC
GCGGCACCCGCACACGCACATGCTGGTACTGGCGAGGGAGAGCGGCGAGG
TTCTGCTCCTCGACGCTGCGGGCCACGCAGTCCTGACGTTCGACGCCGGG
CACGGCGGCACGCCCCTGCTCAGCATCGCCTGCGACGCCGCCGGGGAGGC
GGTCATCGCCACCGCCGCCGCCGACGGCTCCGTTTGTGCGCACCGCCTCC
GCGCGTGGCTGTGGGGCACGCAGCTCGCGGGCGCTGCCGCCGGCAGGCGC
GCGCCACCGAGCGCTGCTGCTGCCTCTGTATCATTGAGCCAGCAGCCACA
GGACGGCCAACCGGGCGGTCAACAAGCGGGTGCAGAGGAGGAGGAGGAGG
AGGAAGTGCAGCTGCCTGAGGCATCGCCGCTGGGCTTGGCTGCCGCGCTG
CGGCGAACGGTGGCGCTGCGCGCGGCGCGCAGCGACCCTCACGGCAGCAG
CGGCAGTGCTGCGGACGGCACTCAGTGTGCAGCGGACGACGGTGCTGCAG
CAGCAGCAGCAGCGCCGCTGCCATTGCAGCGCCCCATGCACGCGTTCCAG
CATATGTTGCACGGCAAGCTTGTGGCGATTGCTGGCAGCGGCGGCGGCAG
CGGCGGCGGCGGCAGCGACCTGCTCTTCTACAGCGCCACCAACGGCACTC
TGCTCGCGCGAGCCGTTCTCGCCACTGCGCACCCCATCACGGCACTCGCC
TTCAGCACCCCCTACATCGCCGCCGCCGCGGGCCCAGATGTTTATGTGCT
CAACACCTGGCGCCTGCCCTCGCCGGCGGCGCCGCACGAGACACCACACG
AGCCCTGCATCTGCCGCGCGCCGCCTGCGCGGGGTTCAACCGCCACATCG
CTGACCTTCGATGCGCTGTCGGCGGGAACGCTCTTCGCGGGCACCAGCGG
CGGCGAAACGCATGTGTTTGGCGTGCGCGTCCGCGGCGCCGCCGCCGCCG
CCGCCCACTGCTGCCGGCTGCTGGAGACGCTGCCGCCGGCGGCGGGCGGC
GGCGCGCCCGTCGCCAACCTCGCGGCGACGCCGGGCTACCTCATCGCCGC
GACGGGCGGCCTGCTTACCGCGTACAACACCACGGACATGATGCGCGAGG
GCGTGCGGCGCGAGTGCGCGTGGCGCGCGGCGGCGGCGGGGCCCATGGCG
GTCGCCGCGGCGGCGCCGCCCGCCGGCGCGGCGGCGCGCCGCGTGGCGCT
GCTCGTCGTTGCCGGCGCCTCCGGCGCCGCCGCCGCCGTGGACGCGCTGC
TGCCGTACGCGCCGCGCGCGCCGCTGGACCTGCGCTGGGCGCGCCTGCCG
GCGATGGCGGCGGCGCTCGTGGCAGTGCTCGCGTACCACGTCGTGTGCAG
AGGCGGCGGCGGCGGCGGCGGCGCGAAGCACGCGTCGAGCAGGAGCCGGC
GGCGCCAGGACGCGGGCGGCGGCGTGAATGCGAGCGTGTACAGGGGTGTG
GAGCAGTCGCTTCACGGGCTGGATAGGAGGATCGAGGGGCTGCAGGGGCG
GGGGAGGGGGGGAGCGGGCGGTCGGTGGGAGGGGGGCGCGCTGCGGCGTC
GCGGCCGCGACGTCGATGACCTAGACTGGGACAAATGA
back to top

Coding sequence (CDS) from alignment at Contig_51:809741..811528-

>mRNA_8845 ID=mRNA_8845|Name=jgi.p|Trimin1|349922|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1788bp|location=Sequence derived from alignment at Contig_51:809741..811528- (Tribonema minus UTEX_B_3156 )
ATGCTCGGCGCGCCGGCCGCTTATCCTGCCGCAGCAGTGGCTCTGGACGA
CTGCGCCAACATGTTCAGCGAGCAGGTGTCCCTCGGGCAAGGCTTCCTTC
CACGCCTGACGGGAGTGCTGAACTTCAAGCCTGCGCGCCGCGCGGCGCCT
TCCAAAAAATCCAGGCCTGTCGCCAGCGGGCCCGTCTCTAACGCGCCGCC
GCGGCACCCGCACACGCACATGCTGGTACTGGCGAGGGAGAGCGGCGAGG
TTCTGCTCCTCGACGCTGCGGGCCACGCAGTCCTGACGTTCGACGCCGGG
CACGGCGGCACGCCCCTGCTCAGCATCGCCTGCGACGCCGCCGGGGAGGC
GGTCATCGCCACCGCCGCCGCCGACGGCTCCGTTTGTGCGCACCGCCTCC
GCGCGTGGCTGTGGGGCACGCAGCTCGCGGGCGCTGCCGCCGGCAGGCGC
GCGCCACCGAGCGCTGCTGCTGCCTCTGTATCATTGAGCCAGCAGCCACA
GGACGGCCAACCGGGCGGTCAACAAGCGGGTGCAGAGGAGGAGGAGGAGG
AGGAAGTGCAGCTGCCTGAGGCATCGCCGCTGGGCTTGGCTGCCGCGCTG
CGGCGAACGGTGGCGCTGCGCGCGGCGCGCAGCGACCCTCACGGCAGCAG
CGGCAGTGCTGCGGACGGCACTCAGTGTGCAGCGGACGACGGTGCTGCAG
CAGCAGCAGCAGCGCCGCTGCCATTGCAGCGCCCCATGCACGCGTTCCAG
CATATGTTGCACGGCAAGCTTGTGGCGATTGCTGGCAGCGGCGGCGGCAG
CGGCGGCGGCGGCAGCGACCTGCTCTTCTACAGCGCCACCAACGGCACTC
TGCTCGCGCGAGCCGTTCTCGCCACTGCGCACCCCATCACGGCACTCGCC
TTCAGCACCCCCTACATCGCCGCCGCCGCGGGCCCAGATGTTTATGTGCT
CAACACCTGGCGCCTGCCCTCGCCGGCGGCGCCGCACGAGACACCACACG
AGCCCTGCATCTGCCGCGCGCCGCCTGCGCGGGGTTCAACCGCCACATCG
CTGACCTTCGATGCGCTGTCGGCGGGAACGCTCTTCGCGGGCACCAGCGG
CGGCGAAACGCATGTGTTTGGCGTGCGCGTCCGCGGCGCCGCCGCCGCCG
CCGCCCACTGCTGCCGGCTGCTGGAGACGCTGCCGCCGGCGGCGGGCGGC
GGCGCGCCCGTCGCCAACCTCGCGGCGACGCCGGGCTACCTCATCGCCGC
GACGGGCGGCCTGCTTACCGCGTACAACACCACGGACATGATGCGCGAGG
GCGTGCGGCGCGAGTGCGCGTGGCGCGCGGCGGCGGCGGGGCCCATGGCG
GTCGCCGCGGCGGCGCCGCCCGCCGGCGCGGCGGCGCGCCGCGTGGCGCT
GCTCGTCGTTGCCGGCGCCTCCGGCGCCGCCGCCGCCGTGGACGCGCTGC
TGCCGTACGCGCCGCGCGCGCCGCTGGACCTGCGCTGGGCGCGCCTGCCG
GCGATGGCGGCGGCGCTCGTGGCAGTGCTCGCGTACCACGTCGTGTGCAG
AGGCGGCGGCGGCGGCGGCGGCGCGAAGCACGCGTCGAGCAGGAGCCGGC
GGCGCCAGGACGCGGGCGGCGGCGTGAATGCGAGCGTGTACAGGGGTGTG
GAGCAGTCGCTTCACGGGCTGGATAGGAGGATCGAGGGGCTGCAGGGGCG
GGGGAGGGGGGGAGCGGGCGGTCGGTGGGAGGGGGGCGCGCTGCGGCGTC
GCGGCCGCGACGTCGATGACCTAGACTGGGACAAATGA
back to top