mRNA_8655 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152953
Unique NamemRNA_8655
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A835YW72_9STRA (GPI mannosyltransferase 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW72_9STRA)

HSP 1 Score: 141 bits (356), Expect = 7.520e-43
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 LVYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLMILN 204
            LVYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLMILN
Sbjct:    1 LVYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLMILN 68
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BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A7S1NR28_9EUGL (GPI mannosyltransferase 1 (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NR28_9EUGL)

HSP 1 Score: 93.2 bits (230), Expect = 5.350e-23
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 LVYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLMILN 204
            LV+AAALG+RL L+A+G WQD    V+YTD+DY V +DAAV M+ G SPY RATYRYTPLLA+++ +N
Sbjct:    7 LVFAAALGVRLLLLAYGAWQDANLRVKYTDIDYSVFSDAAVFMSKGGSPYERATYRYTPLLAFMLQVN 74
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BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A1V8U2T4_9PEZI (GPI mannosyltransferase 1 (Fragment) n=1 Tax=Rachicladosporium sp. CCFEE 5018 TaxID=1974281 RepID=A0A1V8U2T4_9PEZI)

HSP 1 Score: 89.4 bits (220), Expect = 2.100e-20
Identity = 39/64 (60.94%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    4 VYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLM 195
            V+A A+G+R+AL+A+ +WQD  + ++YTD+DY V TDAA  ++ GRSPY RATYRYTPLLAWL+
Sbjct:   11 VFAIAIGLRVALLAYSRWQDANSPMKYTDIDYIVFTDAAQFVSRGRSPYQRATYRYTPLLAWLL 74
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BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A0B6ZFK7_9EUPU (GPI mannosyltransferase 1 (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZFK7_9EUPU)

HSP 1 Score: 85.9 bits (211), Expect = 3.500e-20
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    7 YAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLMILN 204
            Y  A  +RL L+ +G WQD+   V+YTDVDY VL+DAA  ++ G SPY RATYRYTPLLAW + LN
Sbjct:   11 YRLAFAVRLGLMLYGVWQDSHMAVKYTDVDYYVLSDAAQFVSQGESPYQRATYRYTPLLAWALTLN 76
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BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A3M7FUQ3_HORWE (GPI mannosyltransferase 1 n=5 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7FUQ3_HORWE)

HSP 1 Score: 91.7 bits (226), Expect = 3.980e-20
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 LVYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLM 195
            LVY+AA+ +RLAL+ +G+WQD+ + V+YTD+DY V TDAA  ++ GRSPY RATYRYTPLLAWL+
Sbjct:   56 LVYSAAILLRLALLVYGRWQDSNSPVKYTDIDYLVFTDAARYVSIGRSPYDRATYRYTPLLAWLL 120
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BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A3M7AIZ2_HORWE (GPI mannosyltransferase 1 n=10 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7AIZ2_HORWE)

HSP 1 Score: 91.3 bits (225), Expect = 4.500e-20
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 LVYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLM 195
            LVY AA+ +RLAL+ +G+WQD+ + V+YTD+DY V TDAA  ++ GRSPY RATYRYTPLLAWL+
Sbjct:   14 LVYTAAILLRLALLVYGRWQDSNSPVKYTDIDYLVFTDAARYVSIGRSPYDRATYRYTPLLAWLL 78
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BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A446TD18_TRITD (GPI mannosyltransferase 1 n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446TD18_TRITD)

HSP 1 Score: 86.3 bits (212), Expect = 1.150e-19
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    4 VYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLMILN 204
            V AA+  +RLAL+A+G+WQD    VRYTDVDY V +DAA  +AAG SP++RATYRY+PLLA+L++ N
Sbjct:   21 VLAASAALRLALVAYGEWQDAHLEVRYTDVDYLVFSDAAASVAAGGSPFARATYRYSPLLAFLLLPN 87
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BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A0L0DBK0_THETB (GPI mannosyltransferase 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBK0_THETB)

HSP 1 Score: 90.5 bits (223), Expect = 1.290e-19
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   10 AAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLMILN 204
            A  L  R+AL+AW +WQD  + V+YTD+DY V TD A  +AAG SPY RATYRYTPLLAWL++ N
Sbjct:   11 AVGLAARVALLAWAEWQDAVSPVKYTDIDYAVFTDGAAAVAAGGSPYDRATYRYTPLLAWLLVPN 75
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BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A3M6YTE6_HORWE (GPI mannosyltransferase 1 n=2 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M6YTE6_HORWE)

HSP 1 Score: 89.4 bits (220), Expect = 2.280e-19
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 LVYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLM 195
            LVY AA+ +RLAL+ +G+WQD+ + V+YTD+DY V TDAA  ++ GRSPY R TYRYTPLLAWL+
Sbjct:   14 LVYTAAVLLRLALLVYGRWQDSNSPVKYTDIDYLVFTDAARYVSIGRSPYDRTTYRYTPLLAWLL 78
[Close]
BLAST of jgi.p|Trimin1|152953 vs. uniprot
Match: A0A0S7M016_9TELE (GPI mannosyltransferase 1 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7M016_9TELE)

HSP 1 Score: 84.3 bits (207), Expect = 2.390e-19
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 LVYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPYSRATYRYTPLLAWLMILN 204
            +++ A+  +RLAL+A+G +QD    V+YTD+DY V TDAA  +  G SPY+R+TYRYTPLLAWL+  N
Sbjct:   13 VLFPASFALRLALVAYGDYQDRTMAVKYTDIDYHVFTDAARFITQGESPYNRSTYRYTPLLAWLLTPN 80
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152953 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YW72_9STRA7.520e-43100.00GPI mannosyltransferase 1 (Fragment) n=1 Tax=Tribo... [more]
A0A7S1NR28_9EUGL5.350e-2363.24GPI mannosyltransferase 1 (Fragment) n=1 Tax=Eutre... [more]
A0A1V8U2T4_9PEZI2.100e-2060.94GPI mannosyltransferase 1 (Fragment) n=1 Tax=Rachi... [more]
A0A0B6ZFK7_9EUPU3.500e-2059.09GPI mannosyltransferase 1 (Fragment) n=1 Tax=Arion... [more]
A0A3M7FUQ3_HORWE3.980e-2064.62GPI mannosyltransferase 1 n=5 Tax=Hortaea wernecki... [more]
A0A3M7AIZ2_HORWE4.500e-2064.62GPI mannosyltransferase 1 n=10 Tax=Hortaea werneck... [more]
A0A446TD18_TRITD1.150e-1961.19GPI mannosyltransferase 1 n=2 Tax=Triticum turgidu... [more]
A0A0L0DBK0_THETB1.290e-1961.54GPI mannosyltransferase 1 n=1 Tax=Thecamonas trahe... [more]
A0A3M6YTE6_HORWE2.280e-1963.08GPI mannosyltransferase 1 n=2 Tax=Hortaea wernecki... [more]
A0A0S7M016_9TELE2.390e-1954.41GPI mannosyltransferase 1 n=1 Tax=Poeciliopsis pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_61contigContig_61:17212..17415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152953|gw1.61.177.1
CAZyGT50
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03036
KEGG ReactionR05919
KEGG ModuleM00065
KEGG Pathwayko00563,ko01100,map00563,map01100
KEGG koko:K05284,ko:K16457,ko:K19352
GOsGO:0000030,GO:0000226,GO:0001578,GO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005929,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0012505,GO:0014020,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019637,GO:0021915,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0030447,GO:0030448,GO:0031224,GO:0031501,GO:0031505,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036211,GO:0036477,GO:0040007,GO:0042157,GO:0042158,GO:0042175,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044292,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045017,GO:0045229,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0048513,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0061512,GO:0065007,GO:0070085,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0072175,GO:0072359,GO:0090407,GO:0097447,GO:0097458,GO:0097502,GO:0097711,GO:0098827,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1904491,GO:1905515,GO:1990234,GO:1990403,GO:1990529
Preferred nameCC2D2A
DescriptionGPI anchor biosynthetic process
COG categoryZ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3639@1|root,KOG3893@1|root,KOG3639@2759|Eukaryota,KOG3893@2759|Eukaryota
Evalue2.11e-20
Seed ortholog529818.AMSG_00450T0
Hectar predicted targeting categorysignal peptide
TranscriptId153275
TrackFilteredModels1
ProteinId152953
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152953gene_8655Tribonema minus UTEX_B_3156 geneContig_61 17212..17415 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8655_1exon_8655_1Tribonema minus UTEX_B_3156 exonContig_61 17212..17415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8655CDS_8655Tribonema minus UTEX_B_3156 CDSContig_61 17212..17415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152953Trimin1|152953|gw1.61.177.1Tribonema minus UTEX_B_3156 polypeptideContig_61 17212..17415 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8655 ID=mRNA_8655|Name=jgi.p|Trimin1|152953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=204bp|location=Sequence derived from alignment at Contig_61:17212..17415+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTGTCTATGCAGCAGCTCTGGGCATTCGCCTAGCGCTGATTGCCTGGGG
GCAGTGGCAGGATACTTGGGCAGGGGTAAGGTACACCGACGTAGACTACG
ATGTGCTCACGGATGCAGCGGTGCTGATGGCAGCGGGAAGGAGCCCTTAC
AGCAGAGCTACCTACCGCTACACGCCGCTGTTGGCATGGCTGATGATTCT
AAAT
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protein sequence of jgi.p|Trimin1|152953

>Trimin1|152953|gw1.61.177.1 ID=Trimin1|152953|gw1.61.177.1|Name=jgi.p|Trimin1|152953|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=68bp
LVYAAALGIRLALIAWGQWQDTWAGVRYTDVDYDVLTDAAVLMAAGRSPY
SRATYRYTPLLAWLMILN
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mRNA from alignment at Contig_61:17212..17415+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8655 ID=mRNA_8655|Name=jgi.p|Trimin1|152953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=204bp|location=Sequence derived from alignment at Contig_61:17212..17415+ (Tribonema minus UTEX_B_3156 )
CTTGTCTATGCAGCAGCTCTGGGCATTCGCCTAGCGCTGATTGCCTGGGG
GCAGTGGCAGGATACTTGGGCAGGGGTAAGGTACACCGACGTAGACTACG
ATGTGCTCACGGATGCAGCGGTGCTGATGGCAGCGGGAAGGAGCCCTTAC
AGCAGAGCTACCTACCGCTACACGCCGCTGTTGGCATGGCTGATGATTCT
AAAT
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Coding sequence (CDS) from alignment at Contig_61:17212..17415+

>mRNA_8655 ID=mRNA_8655|Name=jgi.p|Trimin1|152953|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=204bp|location=Sequence derived from alignment at Contig_61:17212..17415+ (Tribonema minus UTEX_B_3156 )
CTTGTCTATGCAGCAGCTCTGGGCATTCGCCTAGCGCTGATTGCCTGGGG
GCAGTGGCAGGATACTTGGGCAGGGGTAAGGTACACCGACGTAGACTACG
ATGTGCTCACGGATGCAGCGGTGCTGATGGCAGCGGGAAGGAGCCCTTAC
AGCAGAGCTACCTACCGCTACACGCCGCTGTTGGCATGGCTGATGATTCT
AAAT
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