mRNA_8557 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150919
Unique NamemRNA_8557
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A835YP58_9STRA (Putative prefoldin subunit (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP58_9STRA)

HSP 1 Score: 221 bits (564), Expect = 5.490e-73
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQAGAAAQ 357
            LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQAGAAAQ
Sbjct:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQAGAAAQ 119          
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: D7FJG4_ECTSI (Prefoldin subunit, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG4_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 3.570e-35
Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQAGAAAQ 357
            L EQQ+I  Y+ +LGD + +RRKI+ELEQE +EH++V++TLE +E    RRA+RLVGGVLVERTV +VLP+V+AN  GIKQ+L  LAT    KE+ AA WKIKY IR+Q E QA + AQ
Sbjct:   19 LNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLE--GTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQEAQAMSQAQ 135          
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A6S8XZL5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XZL5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.620e-27
Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQA 342
            L E  V+  YK+L  +CS +  KI ELEQ+  EH+LV ETL+ ++    RRAFRLVGGVLVERTV +VLPSV +N + + +V+ +L   L  K++  AAWK KY+I+T +E +A
Sbjct:    8 LDENAVLVKYKELTAECSNLVNKITELEQDRNEHKLVEETLKPLD--PNRRAFRLVGGVLVERTVGEVLPSVASNRSNLDEVIKNLEARLETKQKETAAWKAKYNIKTAEEAEA 119          
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: K3WSV0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSV0_GLOUD)

HSP 1 Score: 103 bits (257), Expect = 2.470e-26
Identity = 57/109 (52.29%), Postives = 79/109 (72.48%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327
            +TEQQVI+ YK +  +   +  KIAELE E+TEHE V++TL+ +     R+A+R+VGGVLVERTVA+VLP+V +N  GI QVL  L   ++ KEE+A  W+ KY+I+TQ
Sbjct:    5 ITEQQVIATYKAMRAEVRQLAEKIAELEVETTEHERVIQTLKDLP--ATRKAYRMVGGVLVERTVAEVLPAVTSNRDGIAQVLTQLNESIKQKEESANEWQRKYNIQTQ 111          
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A7S2R7M0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R7M0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.890e-26
Identity = 54/114 (47.37%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQA 342
            + EQ V+S YK+L  +C  +  KI ELEQ+  EH+LV +TL  +++   RRAFRLVGGVLVERTV++VLPSV++N   +  V+  +   L+ +++  A WK KY+IRT +E +A
Sbjct:    9 INEQAVLSKYKELQSECHGLVSKITELEQDRNEHKLVEQTLAPIDD--NRRAFRLVGGVLVERTVSEVLPSVRSNRENLDSVIASMEQRLKDRQKETAEWKAKYNIRTAEEAEA 120          
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A5D6XZ09_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ09_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.260e-26
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327
            +TEQQV++ YK L  +   +  KIAELE E  EHE V++TL+ +     R+A+R+VGGVLVERTVA+VLP+V AN  GI QVL  L   L+ KE++A  W+ KY+I+TQ
Sbjct:    6 ITEQQVVATYKALRSEVRQLAEKIAELEVEIAEHERVLQTLQGLP--GARKAYRMVGGVLVERTVAEVLPAVSANRDGIAQVLAQLGESLKQKEKSADDWQRKYNIQTQ 112          
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A7S0CI05_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI05_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.610e-25
Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQA 342
            + E+ V++ YK+L   C+ +  KI ELE +  EH LV +TL+ +E  T RRA+RLVGGVLVERTV ++LP+V  N   I+ VL +L  ++ AK++  + WK KY+I+TQ E QA
Sbjct:   37 IDEKTVLAKYKELQSSCNQLINKITELEFDRNEHRLVEDTLKPLE--TTRRAYRLVGGVLVERTVGEILPAVTTNKENIQMVLDNLQKNMEAKQKETSDWKAKYNIKTQQEAQA 148          
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A1V9YSB5_9STRA (Prefoldin subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSB5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.540e-24
Identity = 54/109 (49.54%), Postives = 78/109 (71.56%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327
            + EQQV++ YK +  +   +  K+AELE E  EH+ V ETL+ +E    RRAFR+VGGVLVERTVA+V+P+V +N  GI++V+G +   L+ KE AA AW+ KY+I++Q
Sbjct:    4 VNEQQVVAQYKGMRTEIRQLAEKLAELELELNEHQRVAETLKSLE--GNRRAFRMVGGVLVERTVAEVVPAVVSNGEGIQKVMGQVEELLKQKEAAANAWQTKYNIKSQ 110          
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A6G0XHR2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHR2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.680e-24
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327
            L EQQVI+ YK +  +   +  K+AELE E  EH+ V ETL   +   +RRAFR+VGGVLVERTVA+VLP+V +N  GI++V+  ++  L+ KE AA AW+ KY+IR Q
Sbjct:    6 LNEQQVIATYKGMRNEVRQLAEKLAELELEFNEHQRVAETLNSYD--GQRRAFRMVGGVLVERTVAEVLPAVVSNAQGIEKVMSQVSDLLKQKEAAANAWQAKYNIRAQ 112          
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A067BH75_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BH75_SAPPC)

HSP 1 Score: 97.4 bits (241), Expect = 6.600e-24
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327
            L EQQVI+ YK +  +   +  K+AE+E E TEH+ V ETL+ ++   +RRAFR+VGGVLVERTV +VLP+V +N  GI +V+  +   L+ KE AA AW+ KY+IR+Q
Sbjct:    6 LNEQQVIAQYKGMRTEIRQLAEKLAEMELEFTEHQRVAETLQALD--GQRRAFRMVGGVLVERTVGEVLPAVVSNGEGIAKVMVQVEDLLKQKEAAANAWQAKYNIRSQ 112          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YP58_9STRA5.490e-73100.00Putative prefoldin subunit (Fragment) n=1 Tax=Trib... [more]
D7FJG4_ECTSI3.570e-3559.66Prefoldin subunit, putative n=2 Tax=Ectocarpus Tax... [more]
A0A6S8XZL5_9STRA7.620e-2750.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K3WSV0_GLOUD2.470e-2652.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2R7M0_9STRA3.890e-2647.37Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A5D6XZ09_9STRA7.260e-2652.29Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S0CI05_9STRA6.610e-2547.37Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1V9YSB5_9STRA1.540e-2449.54Prefoldin subunit 2 n=1 Tax=Thraustotheca clavata ... [more]
A0A6G0XHR2_9STRA1.680e-2451.38Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067BH75_SAPPC6.600e-2450.46Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_57contigContig_57:51650..52498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150919|gw1.57.98.1
BRITEko00000,ko03110
KEGG koko:K09549
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0008150,GO:0009987,GO:0010638,GO:0033043,GO:0044183,GO:0044424,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0065007
Descriptionprotein binding involved in protein folding
COG categoryQ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4098@1|root,KOG4098@2759|Eukaryota
Evalue5.86e-36
Seed ortholog2880.D7FJG4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPrefoldin subunit 2
Ec32 orthologEc-14_006240.1
TranscriptId151241
TrackFilteredModels1
ProteinId150919
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150919gene_8557Tribonema minus UTEX_B_3156 geneContig_57 51650..52498 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8557_1exon_8557_1Tribonema minus UTEX_B_3156 exonContig_57 51650..51753 +
exon_8557_2exon_8557_2Tribonema minus UTEX_B_3156 exonContig_57 52246..52498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8557CDS_8557Tribonema minus UTEX_B_3156 CDSContig_57 51650..51753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150919Trimin1|150919|gw1.57.98.1Tribonema minus UTEX_B_3156 polypeptideContig_57 51650..52498 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8557 ID=mRNA_8557|Name=jgi.p|Trimin1|150919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=357bp|location=Sequence derived from alignment at Contig_57:51650..52498+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGACGGAGCAGCAGGTGATATCACACTACAAGCAACTACTCGGGGACTG
CTCTGCCATCAGGAGGAAGATCGCAGAGCTGGAGCAGGAGAGCACAGAGC
ACGAGCTCGTAATGGAGACGCTAGAGAAGGTGGAGGAGAAGACCAAGCGG
CGCGCGTTCCGCCTCGTGGGCGGCGTTCTCGTGGAACGGACCGTGGCGGA
CGTGCTGCCCAGCGTGCAGGCGAATCACGCAGGAATTAAGCAGGTGCTGG
GACACCTCGCGACAGATCTGCGCGCTAAGGAGGAGGCGGCGGCGGCGTGG
AAGATCAAGTACTCCATCCGGACGCAGGACGAGCTGCAGGCGGGCGCTGC
CGCGCAG
back to top

protein sequence of jgi.p|Trimin1|150919

>Trimin1|150919|gw1.57.98.1 ID=Trimin1|150919|gw1.57.98.1|Name=jgi.p|Trimin1|150919|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKR
RAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAW
KIKYSIRTQDELQAGAAAQ
back to top

mRNA from alignment at Contig_57:51650..52498+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8557 ID=mRNA_8557|Name=jgi.p|Trimin1|150919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_57:51650..52498+ (Tribonema minus UTEX_B_3156 )
CTGACGGAGCAGCAGGTGATATCACACTACAAGCAACTACTCGGGGACTG CTCTGCCATCAGGAGGAAGATCGCAGAGCTGGAGCAGGAGAGCACAGAGC ACGAGTGAGTGTATGTACTGTAATCAACAGCTTTGTGAAATTAGAAAACG TCCGCTTTTGTATCGAAGCCACAGTGATGCTGCACTTAAAGGAAAACCGC TTGCAGTTGGCTGCGAAAACTGTCGTGCAGTATCACACTTGGAGCAACAA TGTGTTCTGGTCAGACGGGCCACGTGCGAAGTTGCCAACGCGACAGTCGC TGTAGACAACATCGGCTGGCACTCGCTAAGAATCATTTGTATCATCATTC AGGCTCGGATACGCTAGGGCGGCGCAGCTCGAGCAGTGCCAGTGTTGTGA CGCTGTGATACCGTTGTTCGGCGTCATGCGGTGGCTAGATCACATCGTTC CAAAGCAGGCATCAACACTCGTAAGGCACCGCGGCAGGTTAGCTCTCATG TCATCATAATCACGGCTCACGCTCAATCACTGTAGTGATATGCATCCTGG GTTACCAGCCAAACAACCTAAGACCCCCTATCATCCCCCCCCCCAGGCTC GTAATGGAGACGCTAGAGAAGGTGGAGGAGAAGACCAAGCGGCGCGCGTT CCGCCTCGTGGGCGGCGTTCTCGTGGAACGGACCGTGGCGGACGTGCTGC CCAGCGTGCAGGCGAATCACGCAGGAATTAAGCAGGTGCTGGGACACCTC GCGACAGATCTGCGCGCTAAGGAGGAGGCGGCGGCGGCGTGGAAGATCAA GTACTCCATCCGGACGCAGGACGAGCTGCAGGCGGGCGCTGCCGCGCAG
back to top

Coding sequence (CDS) from alignment at Contig_57:51650..52498+

>mRNA_8557 ID=mRNA_8557|Name=jgi.p|Trimin1|150919|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_57:51650..52498+ (Tribonema minus UTEX_B_3156 )
CTGACGGAGCAGCAGGTGATATCACACTACAAGCAACTACTCGGGGACTG
CTCTGCCATCAGGAGGAAGATCGCAGAGCTGGAGCAGGAGAGCACAGAGC
ACGAGCTCGTAATGGAGACGCTAGAGAAGGTGGAGGAGAAGACCAAGCGG
CGCGCGTTCCGCCTCGTGGGCGGCGTTCTCGTGGAACGGACCGTGGCGGA
CGTGCTGCCCAGCGTGCAGGCGAATCACGCAGGAATTAAGCAGGTGCTGG
GACACCTCGCGACAGATCTGCGCGCTAAGGAGGAGGCGGCGGCGGCGTGG
AAGATCAAGTACTCCATCCGGACGCAGGACGAGCTGCAGGCGGGCGCTGC
CGCGCAG
back to top