mRNA_8557 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A835YP58_9STRA (Putative prefoldin subunit (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP58_9STRA) HSP 1 Score: 221 bits (564), Expect = 5.490e-73 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQAGAAAQ 357 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQAGAAAQ Sbjct: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQAGAAAQ 119
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: D7FJG4_ECTSI (Prefoldin subunit, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG4_ECTSI) HSP 1 Score: 127 bits (318), Expect = 3.570e-35 Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQAGAAAQ 357 L EQQ+I Y+ +LGD + +RRKI+ELEQE +EH++V++TLE +E RRA+RLVGGVLVERTV +VLP+V+AN GIKQ+L LAT KE+ AA WKIKY IR+Q E QA + AQ Sbjct: 19 LNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLE--GTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQEAQAMSQAQ 135
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A6S8XZL5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XZL5_9STRA) HSP 1 Score: 105 bits (262), Expect = 7.620e-27 Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQA 342 L E V+ YK+L +CS + KI ELEQ+ EH+LV ETL+ ++ RRAFRLVGGVLVERTV +VLPSV +N + + +V+ +L L K++ AAWK KY+I+T +E +A Sbjct: 8 LDENAVLVKYKELTAECSNLVNKITELEQDRNEHKLVEETLKPLD--PNRRAFRLVGGVLVERTVGEVLPSVASNRSNLDEVIKNLEARLETKQKETAAWKAKYNIKTAEEAEA 119
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: K3WSV0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSV0_GLOUD) HSP 1 Score: 103 bits (257), Expect = 2.470e-26 Identity = 57/109 (52.29%), Postives = 79/109 (72.48%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327 +TEQQVI+ YK + + + KIAELE E+TEHE V++TL+ + R+A+R+VGGVLVERTVA+VLP+V +N GI QVL L ++ KEE+A W+ KY+I+TQ Sbjct: 5 ITEQQVIATYKAMRAEVRQLAEKIAELEVETTEHERVIQTLKDLP--ATRKAYRMVGGVLVERTVAEVLPAVTSNRDGIAQVLTQLNESIKQKEESANEWQRKYNIQTQ 111
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A7S2R7M0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R7M0_9STRA) HSP 1 Score: 103 bits (257), Expect = 3.890e-26 Identity = 54/114 (47.37%), Postives = 79/114 (69.30%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQA 342 + EQ V+S YK+L +C + KI ELEQ+ EH+LV +TL +++ RRAFRLVGGVLVERTV++VLPSV++N + V+ + L+ +++ A WK KY+IRT +E +A Sbjct: 9 INEQAVLSKYKELQSECHGLVSKITELEQDRNEHKLVEQTLAPIDD--NRRAFRLVGGVLVERTVSEVLPSVRSNRENLDSVIASMEQRLKDRQKETAEWKAKYNIRTAEEAEA 120
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A5D6XZ09_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ09_9STRA) HSP 1 Score: 102 bits (254), Expect = 7.260e-26 Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327 +TEQQV++ YK L + + KIAELE E EHE V++TL+ + R+A+R+VGGVLVERTVA+VLP+V AN GI QVL L L+ KE++A W+ KY+I+TQ Sbjct: 6 ITEQQVVATYKALRSEVRQLAEKIAELEVEIAEHERVLQTLQGLP--GARKAYRMVGGVLVERTVAEVLPAVSANRDGIAQVLAQLGESLKQKEKSADDWQRKYNIQTQ 112
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A7S0CI05_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI05_9STRA) HSP 1 Score: 101 bits (251), Expect = 6.610e-25 Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQA 342 + E+ V++ YK+L C+ + KI ELE + EH LV +TL+ +E T RRA+RLVGGVLVERTV ++LP+V N I+ VL +L ++ AK++ + WK KY+I+TQ E QA Sbjct: 37 IDEKTVLAKYKELQSSCNQLINKITELEFDRNEHRLVEDTLKPLE--TTRRAYRLVGGVLVERTVGEILPAVTTNKENIQMVLDNLQKNMEAKQKETSDWKAKYNIKTQQEAQA 148
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A1V9YSB5_9STRA (Prefoldin subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSB5_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.540e-24 Identity = 54/109 (49.54%), Postives = 78/109 (71.56%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327 + EQQV++ YK + + + K+AELE E EH+ V ETL+ +E RRAFR+VGGVLVERTVA+V+P+V +N GI++V+G + L+ KE AA AW+ KY+I++Q Sbjct: 4 VNEQQVVAQYKGMRTEIRQLAEKLAELELELNEHQRVAETLKSLE--GNRRAFRMVGGVLVERTVAEVVPAVVSNGEGIQKVMGQVEELLKQKEAAANAWQTKYNIKSQ 110
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A6G0XHR2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHR2_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.680e-24 Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327 L EQQVI+ YK + + + K+AELE E EH+ V ETL + +RRAFR+VGGVLVERTVA+VLP+V +N GI++V+ ++ L+ KE AA AW+ KY+IR Q Sbjct: 6 LNEQQVIATYKGMRNEVRQLAEKLAELELEFNEHQRVAETLNSYD--GQRRAFRMVGGVLVERTVAEVLPAVVSNAQGIEKVMSQVSDLLKQKEAAANAWQAKYNIRAQ 112
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Match: A0A067BH75_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BH75_SAPPC) HSP 1 Score: 97.4 bits (241), Expect = 6.600e-24 Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQ 327 L EQQVI+ YK + + + K+AE+E E TEH+ V ETL+ ++ +RRAFR+VGGVLVERTV +VLP+V +N GI +V+ + L+ KE AA AW+ KY+IR+Q Sbjct: 6 LNEQQVIAQYKGMRTEIRQLAEKLAEMELEFTEHQRVAETLQALD--GQRRAFRMVGGVLVERTVGEVLPAVVSNGEGIAKVMVQVEDLLKQKEAAANAWQAKYNIRSQ 112 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150919 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8557 ID=mRNA_8557|Name=jgi.p|Trimin1|150919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=357bp|location=Sequence derived from alignment at Contig_57:51650..52498+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGACGGAGCAGCAGGTGATATCACACTACAAGCAACTACTCGGGGACTGback to top protein sequence of jgi.p|Trimin1|150919 >Trimin1|150919|gw1.57.98.1 ID=Trimin1|150919|gw1.57.98.1|Name=jgi.p|Trimin1|150919|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRback to top mRNA from alignment at Contig_57:51650..52498+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8557 ID=mRNA_8557|Name=jgi.p|Trimin1|150919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_57:51650..52498+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_57:51650..52498+ >mRNA_8557 ID=mRNA_8557|Name=jgi.p|Trimin1|150919|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_57:51650..52498+ (Tribonema minus UTEX_B_3156 )back to top |