mRNA_8436 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|61652
Unique NamemRNA_8436
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|61652 vs. uniprot
Match: A0A835YWA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWA6_9STRA)

HSP 1 Score: 525 bits (1353), Expect = 7.250e-187
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 2 
Query:  164 MLNGTLAGGQRCEFTEALLKLLKRLMARPRYQGECSPSDMACAIMRKASRTASGCDSYHFVHQLYGADENYLLKPRAVTLPPVEVEVSLVDSCIISKVITRNPLALYKMADLENSAAEAVQVEPWLYFDTTVTERTNHDARGGSSSSGNDSIRYLSVAIPEDPSDINTCMYLCKPMYHFQEQNMLWGADAPCDAPLPLQSIQSNSLLRRRSSASAICVPTMTAEIACGEAAVPVPAAANRCRNRRQMGATTSSSTTSLPRLSI 952
            MLNGTLAGGQRCEFTEALLKLLKRLMARPRYQGECSPSDMACAIMRKASRTASGCDSYHFVHQLYGADENYLLKPRAVTLPPVEVEVSLVDSCIISKVITRNPLALYKMADLENSAAEAVQVEPWLYFDTTVTERTNHDARGGSSSSGNDSIRYLSVAIPEDPSDINTCMYLCKPMYHFQEQNMLWGADAPCDAPLPLQSIQSNSLLRRRSSASAICVPTMTAEIACGEAAVPVPAAANRCRNRRQMGATTSSSTTSLPRLSI
Sbjct:    1 MLNGTLAGGQRCEFTEALLKLLKRLMARPRYQGECSPSDMACAIMRKASRTASGCDSYHFVHQLYGADENYLLKPRAVTLPPVEVEVSLVDSCIISKVITRNPLALYKMADLENSAAEAVQVEPWLYFDTTVTERTNHDARGGSSSSGNDSIRYLSVAIPEDPSDINTCMYLCKPMYHFQEQNMLWGADAPCDAPLPLQSIQSNSLLRRRSSASAICVPTMTAEIACGEAAVPVPAAANRCRNRRQMGATTSSSTTSLPRLSI 263
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BLAST of jgi.p|Trimin1|61652 vs. uniprot
Match: A0A835YHT3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT3_9STRA)

HSP 1 Score: 154 bits (390), Expect = 7.530e-42
Identity = 90/215 (41.86%), Postives = 123/215 (57.21%), Query Frame = 2 
Query:    8 LLREVQRACSGGDSAAVRAAFDAHLDQFLAIRLAPSVVTEAQAHKDLARENVMLNGTLAGGQRCEFTEALLKLLKRLMARPRYQGECSPSDMACAIMRKASRTASGCDSYHFVHQLYGADENYLLKPRAVTLPPVEVEVSLVDSCIISKVITRNPLALYKMADLENSAAEAVQV-EPWLYFDTTVTERTNHDARGGSSSSGNDSIRYLSVAIPED 649
            L+   Q  C   D   ++A F  + + F AI L  S VT++QA  DL RENV+LNG    G   +F +AL +++    +   Y G  + S+++  ++RKASRT SG DSY  V QL+ ADENYLLKPR   LPP+EV+V L D CI SKV   N   LY M D++      ++  +PWL  DTTV E TNH+           ++R+L + IPED
Sbjct:    5 LVARAQELCVANDREELKALFANYYEHFGAIPLDDSDVTDSQAINDLVRENVILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFALPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGVLKPPKPWLSLDTTVVEETNHNTC--------QNVRHLEIIIPED 211
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BLAST of jgi.p|Trimin1|61652 vs. uniprot
Match: A0A7S3UYC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYC6_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 1.610e-12
Identity = 61/185 (32.97%), Postives = 95/185 (51.35%), Query Frame = 2 
Query:   98 IRLAPSVVTEAQAHKDLARENVMLNGTLAGGQRCEFTEALLKLLKRLMARPRYQGECSPSDMACAIMRKASRTASGCDSYHFVHQLYGADENYLLKPRAVTLPPVEVE-VSLVDSCIISKVITRNPLALYKMADLEN-SAAEAVQVEPWLYFDTTVTERTNHDARGGSSSSGNDSIRYLSVAIPE 646
            I L  + V   QA +D+ RE V+ NG    G +  F   L   ++RL+ + R+  + +  ++  AI+ KASRTASG DSY FV++L+     +LLKPR    PPV V+ V+     ++  + ++N   LY    +++ S A+     PWL  D  V E  N D  G      N   R++ V+ P+
Sbjct:   47 ILLPMAEVEPDQAKRDMQREKVIFNGVNFFGYQERFVPFLESYVRRLVKKLRWPPQRA-QEITEAILEKASRTASGYDSYFFVNELFEVP-GHLLKPRFEPTPPVRVDLVAAPRGALLCHIASKNLYGLYDFTHIDDTSRADDEHPSPWLRLDAEVFE--NIDFAGD-----NRWARFMRVSSPD 222
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BLAST of jgi.p|Trimin1|61652 vs. uniprot
Match: A0A2P4Y6E5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6E5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.950e-9
Identity = 58/164 (35.37%), Postives = 80/164 (48.78%), Query Frame = 2 
Query:  119 VTEAQAHKDLARENVMLNGT-LAGGQRCEFTEALLKLLKRLMARPRYQGECSPSD---MACAIMRKASRTASGCDSYHFVHQLYGADENYLLKPRAVTLPPVEVEVS--LVDSCIISKVITRNPLALYKMADLE---NSAAEAVQVEPWLYFDTTVTERTNHDA 583
            V  AQA +D ARE +MLNG    G  R   TEA +  +KR+++   Y G+  P     +A  IMR  SRT SG DS+  VH+L+ A    L+KPR     P++V +     D     ++   N   L+   D+E    S  EA+   P +  D  V ER N  A
Sbjct:   48 VDTAQAFRDAAREEIMLNGVRFVGAHR---TEAFVAAIKRIVSE--YVGDEHPERTLLVADRIMRGCSRTLSGADSFFAVHELF-ATSALLIKPREAAAVPLDVTLGRDYEDHRFKCRIKCVNHFGLFSNEDIELLLQSGREALDA-PLVAIDAIVVERMNLSA 204
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|61652 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YWA6_9STRA7.250e-187100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YHT3_9STRA7.530e-4241.86Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3UYC6_HETAK1.610e-1232.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2P4Y6E5_9STRA1.950e-935.37Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:986323..988583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|61652|CE61651_33
Max annot lvl121069|Pythiales
EggNOG OGs2APGJ@1|root,2RZGR@2759|Eukaryota,1MI37@121069|Pythiales
Evalue4.17e-11
Seed ortholog65071.PYU1_T000024
Hectar predicted targeting categoryother localisation
TranscriptId61974
TrackFilteredModels1
ProteinId61652
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|61652gene_8436Tribonema minus UTEX_B_3156 geneContig_36 986323..988583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|61652Trimin1|61652|CE61651_33Tribonema minus UTEX_B_3156 polypeptideContig_36 986577..988455 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8436_1exon_8436_1Tribonema minus UTEX_B_3156 exonContig_36 986323..986482 +
exon_8436_2exon_8436_2Tribonema minus UTEX_B_3156 exonContig_36 986574..986689 +
exon_8436_3exon_8436_3Tribonema minus UTEX_B_3156 exonContig_36 987186..987426 +
exon_8436_4exon_8436_4Tribonema minus UTEX_B_3156 exonContig_36 988018..988583 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_8436UTR5_8436Tribonema minus UTEX_B_3156 five_prime_UTRContig_36 986323..986482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8436CDS_8436Tribonema minus UTEX_B_3156 CDSContig_36 986577..986689 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8436UTR3_8436Tribonema minus UTEX_B_3156 three_prime_UTRContig_36 988456..988583 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8436 ID=mRNA_8436|Name=jgi.p|Trimin1|61652|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1083bp|location=Sequence derived from alignment at Contig_36:986323..988583+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCATCTTTGCTCAGGGAGGTACAACGTGCATGCAGTGGCGGAGACAGCG
CAGCAGTGAGGGCTGCGTTCGACGCTCACCTCGATCAGTTTCTGGCGATT
CGGCTGGCTCCCTCCGTGGTGACCGAAGCGCAAGCACACAAGGACTTGGC
GAGGGAGAATGTGATGCTAAATGGAACTCTCGCGGGTGGGCAAAGGTGCG
AATTCACGGAGGCGCTGCTGAAGCTGCTCAAGCGGCTCATGGCGAGGCCG
CGGTATCAGGGTGAATGCTCGCCGAGTGACATGGCATGCGCCATAATGCG
CAAAGCCAGCCGGACCGCCAGCGGCTGCGACAGTTACCACTTCGTTCACC
AGCTCTATGGCGCAGATGAGAATTATCTCCTCAAGCCAAGGGCGGTGACT
CTCCCCCCTGTTGAAGTGGAAGTGTCACTGGTGGATAGCTGCATCATCAG
CAAAGTCATCACACGCAACCCACTGGCGCTGTACAAAATGGCGGACCTCG
AGAACTCAGCTGCTGAGGCTGTGCAAGTGGAGCCCTGGCTGTACTTTGAC
ACCACCGTAACGGAGAGGACAAACCATGATGCCCGCGGTGGCAGCAGCAG
CAGCGGCAACGATAGCATTCGCTACTTGAGTGTGGCCATCCCAGAAGACC
CATCAGATATCAACACATGTATGTACCTGTGCAAGCCCATGTATCACTTT
CAAGAGCAGAACATGCTGTGGGGGGCGGACGCGCCATGCGACGCTCCTCT
GCCTCTACAGAGCATCCAGTCAAACAGCCTGCTGCGCCGTCGCAGCAGTG
CCTCGGCAATCTGCGTACCCACTATGACAGCTGAAATTGCGTGTGGGGAA
GCGGCTGTGCCTGTGCCAGCTGCCGCGAATCGCTGCCGTAACCGCCGTCA
AATGGGTGCGACCACCAGCAGCAGCACCACAAGTCTGCCAAGGCTGAGCA
TATGACCACCACACGCGCGTTGAAGCTGAAAACACGAAGGGCGAGCAGCA
TATCACACACCCGTGTCCGCAGTCCACTGAGTCCAGTGCTTCGCCACCTT
GCGTAGTGTATGGGCACTGAGATCAGATCGACC
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protein sequence of jgi.p|Trimin1|61652

>Trimin1|61652|CE61651_33 ID=Trimin1|61652|CE61651_33|Name=jgi.p|Trimin1|61652|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=264bp
MLNGTLAGGQRCEFTEALLKLLKRLMARPRYQGECSPSDMACAIMRKASR
TASGCDSYHFVHQLYGADENYLLKPRAVTLPPVEVEVSLVDSCIISKVIT
RNPLALYKMADLENSAAEAVQVEPWLYFDTTVTERTNHDARGGSSSSGND
SIRYLSVAIPEDPSDINTCMYLCKPMYHFQEQNMLWGADAPCDAPLPLQS
IQSNSLLRRRSSASAICVPTMTAEIACGEAAVPVPAAANRCRNRRQMGAT
TSSSTTSLPRLSI*
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mRNA from alignment at Contig_36:986323..988583+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8436 ID=mRNA_8436|Name=jgi.p|Trimin1|61652|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2261bp|location=Sequence derived from alignment at Contig_36:986323..988583+ (Tribonema minus UTEX_B_3156 )
GGCATCTTTGCTCAGGGAGGTACAACGTGCATGCAGTGGCGGAGACAGCG
CAGCAGTGAGGGCTGCGTTCGACGCTCACCTCGATCAGTTTCTGGCGATT
CGGCTGGCTCCCTCCGTGGTGACCGAAGCGCAAGCACACAAGGACTTGGC
GAGGGAGAATGTGAGCCACAGCCTGATGAGATCAATGTATACTACTTTTA
TTGCCGCGCTGTAACAGGACCTGATCACTTGCTTTGTGTGGACGGTTGCA
GGTGATGCTAAATGGAACTCTCGCGGGTGGGCAAAGGTGCGAATTCACGG
AGGCGCTGCTGAAGCTGCTCAAGCGGCTCATGGCGAGGCCGCGGTATCAG
GGTGAATGCTCGCCGAGGTAAGAATCTGCAGCGCGTGCACGTTTCGCGGC
ATGCAAAAAGGATGGTTTGCTTGCTTAGCAAGCGAGTTCTTTGCCGTGCA
TTCCTACCACCACCAGAATACCATCATGGAGACTTCTACAGCGTTATTCA
GGAGTACCTGACATCCATTGATTTCAAAGACAAAGATGTCTCTTTAAATC
ACACTTTAACGTTTACGTGAAGTCTCATCACAGAGCCAACTCTGAAAGCA
CCCACGCATGCTTAACGATTTTGTGCAGTCAGCGTAGGTGCCGTTGCCTG
TCAATACGCATGCCCTGGCGGCGAACAACAGCCGGTGGCGACCAACAGTT
TCTATGCACAGCGTGAGCTGTTGTCATGAATATGGCCGTCATCAATGGCA
GTTACAATCACTTCTCAATGCAGATAAAATGGTGCTTCCATAATTACCTG
TCGCTGAATGTGTTGTCCTGACACCTTTTTTTCTGTTGTTGCATGGCTTC
CTTTCAACTGCAGTGACATGGCATGCGCCATAATGCGCAAAGCCAGCCGG
ACCGCCAGCGGCTGCGACAGTTACCACTTCGTTCACCAGCTCTATGGCGC
AGATGAGAATTATCTCCTCAAGCCAAGGGCGGTGACTCTCCCCCCTGTTG
AAGTGGAAGTGTCACTGGTGGATAGCTGCATCATCAGCAAAGTCATCACA
CGCAACCCACTGGCGCTGTACAAAATGGCGGACCTCGAGAACTCAGCTGC
TGAGGTGAGCCAAGTTTCAATATGTTACATGTATACGCAATATAGTCGTC
CGTAGTCTCACTCATGTGAAATGTTGCTAGTTTTTAGTTGCATAGTGTGT
GTCCGAATGCGTGCGGCACTGTAGGCGTTTGTGGCTTGGTGCACTTGATG
GGTATGCATCGTGCAACTGAGCTTCAGGCGCTACAAGTGACTACACCTGC
ATATTGAACTCTGGTGATTGTTCATCCCAAGCTCGAATCATGTCCTCACC
AGCGCACATTAATGACCTTACACACACATCACTGTTGCATGGGTAATGAT
GTCTTGGCCACACTGCTCAGGTTGGTGCATAGTTCGGTTATCAAAGCACA
TCTATGTCTTTGCCCATGGTCATTCATCTGTAGCATATGCCAGATGGCAT
ATGCTTGTTGTGTCAACGCATATGTGTTGACAGACACGACATGCATGCAT
CTGGCGGAGTGTACTGCCTCAGATGTTATTTTGCAACAAGCATTCACAAA
CTCGACATCCATTATTGTTCTTGGATAACCGCATGAATGCCTATGCAGCT
GAAAGCTGAATGTTTTGCCTGTTTTGCTGGCTGTTTCGTCAACAGGCTGT
GCAAGTGGAGCCCTGGCTGTACTTTGACACCACCGTAACGGAGAGGACAA
ACCATGATGCCCGCGGTGGCAGCAGCAGCAGCGGCAACGATAGCATTCGC
TACTTGAGTGTGGCCATCCCAGAAGACCCATCAGATATCAACACATGTAT
GTACCTGTGCAAGCCCATGTATCACTTTCAAGAGCAGAACATGCTGTGGG
GGGCGGACGCGCCATGCGACGCTCCTCTGCCTCTACAGAGCATCCAGTCA
AACAGCCTGCTGCGCCGTCGCAGCAGTGCCTCGGCAATCTGCGTACCCAC
TATGACAGCTGAAATTGCGTGTGGGGAAGCGGCTGTGCCTGTGCCAGCTG
CCGCGAATCGCTGCCGTAACCGCCGTCAAATGGGTGCGACCACCAGCAGC
AGCACCACAAGTCTGCCAAGGCTGAGCATATGACCACCACACGCGCGTTG
AAGCTGAAAACACGAAGGGCGAGCAGCATATCACACACCCGTGTCCGCAG
TCCACTGAGTCCAGTGCTTCGCCACCTTGCGTAGTGTATGGGCACTGAGA
TCAGATCGACC
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Coding sequence (CDS) from alignment at Contig_36:986323..988583+

>mRNA_8436 ID=mRNA_8436|Name=jgi.p|Trimin1|61652|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=792bp|location=Sequence derived from alignment at Contig_36:986323..988583+ (Tribonema minus UTEX_B_3156 )
ATGCTAAATGGAACTCTCGCGGGTGGGCAAAGGTGCGAATTCACGGAGGC
GCTGCTGAAGCTGCTCAAGCGGCTCATGGCGAGGCCGCGGTATCAGGGTG
AATGCTCGCCGAGTGACATGGCATGCGCCATAATGCGCAAAGCCAGCCGG
ACCGCCAGCGGCTGCGACAGTTACCACTTCGTTCACCAGCTCTATGGCGC
AGATGAGAATTATCTCCTCAAGCCAAGGGCGGTGACTCTCCCCCCTGTTG
AAGTGGAAGTGTCACTGGTGGATAGCTGCATCATCAGCAAAGTCATCACA
CGCAACCCACTGGCGCTGTACAAAATGGCGGACCTCGAGAACTCAGCTGC
TGAGGCTGTGCAAGTGGAGCCCTGGCTGTACTTTGACACCACCGTAACGG
AGAGGACAAACCATGATGCCCGCGGTGGCAGCAGCAGCAGCGGCAACGAT
AGCATTCGCTACTTGAGTGTGGCCATCCCAGAAGACCCATCAGATATCAA
CACATGTATGTACCTGTGCAAGCCCATGTATCACTTTCAAGAGCAGAACA
TGCTGTGGGGGGCGGACGCGCCATGCGACGCTCCTCTGCCTCTACAGAGC
ATCCAGTCAAACAGCCTGCTGCGCCGTCGCAGCAGTGCCTCGGCAATCTG
CGTACCCACTATGACAGCTGAAATTGCGTGTGGGGAAGCGGCTGTGCCTG
TGCCAGCTGCCGCGAATCGCTGCCGTAACCGCCGTCAAATGGGTGCGACC
ACCAGCAGCAGCACCACAAGTCTGCCAAGGCTGAGCATATGA
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