mRNA_8425 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152090
Unique NamemRNA_8425
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A835Z412_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z412_9STRA)

HSP 1 Score: 189 bits (480), Expect = 3.450e-61
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 261
            LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS
Sbjct:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 87
[Close]
BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A836C756_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C756_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.230e-54
Identity = 78/87 (89.66%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 261
            LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQ+ALDAHE NHPGCRHVRMEMGGDMD+FVSFV+EHL++ GI MSQCH+HASPPCQPFS
Sbjct:    3 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFS 89
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BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A835Z7H2_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.600e-21
Identity = 44/87 (50.57%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 261
            L+DLFCG GGFS+GA  AG EV LAVDSW+ ALD H   HP   H   E+GGD+ EF   V+  +        + H+H SPPCQ  S
Sbjct:   11 LVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAAVP----VGCRLHLHGSPPCQQLS 93
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BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A835YWN5_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWN5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.030e-21
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 261
            +IDLFCGAGGFS+GA +AG  V LAVD W+ ALD H  NH  C H    +GGD  +FV+ ++  +S R       H+H SPPCQ  S
Sbjct:    4 VIDLFCGAGGFSEGASRAGAVVILAVDCWKAALDVHAANHGDCEHWNEPLGGDPAQFVARLRRVVSRRVPCGGLVHLHGSPPCQNLS 90
[Close]
BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A836CNB4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.760e-21
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQ 252
            +IDLFCGAGGFS+GA +AG  V LAVD WQ ALD H  NHP   H   E+G D  EF   ++  ++ +     + H+HASPPCQ
Sbjct:    4 VIDLFCGAGGFSEGARRAGATVILAVDCWQMALDVHALNHPDVEHWLEELGEDPREFADRLRRVIADKAPPGGRVHLHASPPCQ 87
[Close]
BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A835YX35_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX35_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.090e-21
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHP----GCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQ 252
            LIDLFCGAGGFS+GA Q+G  V LAVD W+ ALD H  NH      C H   E+GGD + F + ++  +S R       H+HASPPCQ
Sbjct:    4 LIDLFCGAGGFSEGARQSGAVVILAVDRWRAALDVHAANHTTPSASCEHWCEELGGDPEAFATRLRHVVSRRVPPGGHVHLHASPPCQ 91
[Close]
BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A835Z4N3_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.370e-20
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 261
            LIDLFCGAGGFS+GA QAG  V LAVD W+ ALD H  NH  C H    +GG   +F   +++ ++ +     + H+HASPPCQ  S
Sbjct:   19 LIDLFCGAGGFSEGARQAGAVVMLAVDCWKAALDVHAANHGDCEHWNEPLGGSAADFAGRLKDFIARKVPPGDRVHLHASPPCQNLS 105
[Close]
BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A835ZAI0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.450e-20
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 261
            ++DLFCG GGFS+GA QAG  V LAVDSW+ ALDAH   HP   H   E+GGD+ EF   V+  + +      + H+H SPPCQ  S
Sbjct:   14 VVDLFCGIGGFSEGARQAGASVALAVDSWRAALDAHASRHPEAEHWCEELGGDVAEFAGRVRAAVPTG----CRLHLHRSPPCQQLS 96
[Close]
BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A835Z6C7_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.030e-20
Identity = 45/87 (51.72%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 261
            +IDLF GAGGFS+GA QAG  V LAVD WQ ALD H  NH  C H R E+GG   E    ++  + +   A    H+HASPPCQ  S
Sbjct:    4 VIDLFSGAGGFSEGARQAGAVVILAVDCWQAALDVHAANHLDCHHWREEVGGHPAELAGRLRAFIGANVPAGQLVHVHASPPCQRLS 90
[Close]
BLAST of jgi.p|Trimin1|152090 vs. uniprot
Match: A0A836CCV2_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.560e-20
Identity = 44/87 (50.57%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 261
            +IDLFCGAGGFS GA Q G  V LAVD W+ ALD H  NHPG  H    +GG   EF   ++  ++       Q H+HASPPCQ  S
Sbjct:    3 VIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLS 89
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152090 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z412_9STRA3.450e-61100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836C756_9STRA2.230e-5489.66S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z7H2_9STRA1.600e-2150.57S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YWN5_9STRA3.030e-2150.57S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CNB4_9STRA6.760e-2151.19S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YX35_9STRA9.090e-2151.14S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z4N3_9STRA1.370e-2049.43S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835ZAI0_9STRA1.450e-2050.57S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z6C7_9STRA2.030e-2051.72S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CCV2_9STRA2.560e-2050.57S-adenosyl-L-methionine-dependent methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:866250..866510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152090|gw1.36.95.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558
EC2.1.1.37
DescriptionBelongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
COG categoryH
Max annot lvl4751|Fungi
EggNOG OGsCOG0270@1|root,2SB19@2759|Eukaryota,3A8IC@33154|Opisthokonta,3Q4E3@4751|Fungi,3RMKM@4890|Ascomycota,21RSP@147550|Sordariomycetes,1F1UD@1028384|Glomerellales
Evalue5.99e-12
Seed ortholog5465.ENH86834
Hectar predicted targeting categoryother localisation
TranscriptId152412
TrackFilteredModels1
ProteinId152090
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152090gene_8425Tribonema minus UTEX_B_3156 geneContig_36 866250..866510 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8425_1exon_8425_1Tribonema minus UTEX_B_3156 exonContig_36 866250..866510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8425CDS_8425Tribonema minus UTEX_B_3156 CDSContig_36 866250..866510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152090Trimin1|152090|gw1.36.95.1Tribonema minus UTEX_B_3156 polypeptideContig_36 866250..866510 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8425 ID=mRNA_8425|Name=jgi.p|Trimin1|152090|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_36:866250..866510- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGATCGATTTGTTCTGTGGGGCAGGGGGGTTCTCACAGGGCGCGGTGCA
AGCGGGTTGCGAGGTGACACTGGCGGTCGACAGTTGGCAAAAGGCACTAG
ATGCACATGAGCAGAATCACCCTGGCTGCCGGCACGTGAGGATGGAGATG
GGGGGTGATATGGATGAGTTCGTTTCATTCGTGCAGGAGCACCTGAGCTC
ACGCGGCATCGCCATGTCACAGTGTCACATACACGCTAGCCCCCCGTGCC
AGCCGTTCTCT
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protein sequence of jgi.p|Trimin1|152090

>Trimin1|152090|gw1.36.95.1 ID=Trimin1|152090|gw1.36.95.1|Name=jgi.p|Trimin1|152090|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp
LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEM
GGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS
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mRNA from alignment at Contig_36:866250..866510-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8425 ID=mRNA_8425|Name=jgi.p|Trimin1|152090|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_36:866250..866510- (Tribonema minus UTEX_B_3156 )
CTGATCGATTTGTTCTGTGGGGCAGGGGGGTTCTCACAGGGCGCGGTGCA
AGCGGGTTGCGAGGTGACACTGGCGGTCGACAGTTGGCAAAAGGCACTAG
ATGCACATGAGCAGAATCACCCTGGCTGCCGGCACGTGAGGATGGAGATG
GGGGGTGATATGGATGAGTTCGTTTCATTCGTGCAGGAGCACCTGAGCTC
ACGCGGCATCGCCATGTCACAGTGTCACATACACGCTAGCCCCCCGTGCC
AGCCGTTCTCT
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Coding sequence (CDS) from alignment at Contig_36:866250..866510-

>mRNA_8425 ID=mRNA_8425|Name=jgi.p|Trimin1|152090|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_36:866250..866510- (Tribonema minus UTEX_B_3156 )
CTGATCGATTTGTTCTGTGGGGCAGGGGGGTTCTCACAGGGCGCGGTGCA
AGCGGGTTGCGAGGTGACACTGGCGGTCGACAGTTGGCAAAAGGCACTAG
ATGCACATGAGCAGAATCACCCTGGCTGCCGGCACGTGAGGATGGAGATG
GGGGGTGATATGGATGAGTTCGTTTCATTCGTGCAGGAGCACCTGAGCTC
ACGCGGCATCGCCATGTCACAGTGTCACATACACGCTAGCCCCCCGTGCC
AGCCGTTCTCT
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