mRNA_842 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156866
Unique NamemRNA_842
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156866 vs. uniprot
Match: A0A836CHT3_9STRA (TNFR-Cys domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHT3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.310e-27
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 MKPSTQAQSVARTKSKLRKPRTKCPHGLANNGINCSQCGGTGVCEHGRKRYFCI 162
            MKPSTQAQSVARTKSKLRKPRTKCPHGLANNGINCSQCGGTGVCEHGRKRYFCI
Sbjct:    1 MKPSTQAQSVARTKSKLRKPRTKCPHGLANNGINCSQCGGTGVCEHGRKRYFCI 54
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156866 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CHT3_9STRA1.310e-27100.00TNFR-Cys domain-containing protein n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1570871..1571620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156866|e_gw1.2.73.1
Hectar predicted targeting categoryother localisation
TranscriptId157188
TrackFilteredModels1
ProteinId156866
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156866gene_842Tribonema minus UTEX_B_3156 geneContig_2 1570871..1571620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_842_1exon_842_1Tribonema minus UTEX_B_3156 exonContig_2 1570871..1571620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_842CDS_842Tribonema minus UTEX_B_3156 CDSContig_2 1570871..1571620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156866Trimin1|156866|e_gw1.2.73.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1570871..1571620 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_842 ID=mRNA_842|Name=jgi.p|Trimin1|156866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=750bp|location=Sequence derived from alignment at Contig_2:1570871..1571620- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCATCAACACAGGCACAAAGTGTTGCGAGAACTAAATCTAAACT
CAGGAAACCCAGGACTAAATGCCCACACGGACTCGCAAATAACGGTATCA
ACTGCAGTCAATGTGGAGGTACCGGTGTCTGTGAGCACGGGCGCAAACGT
TACTTTTGTATACCCTGTAAAGGAGCTGGGATTTGTGAACACAACCAGAG
ACGAAACTCTTGCCAATTGTGCGGAGGCAGCCAGATATGTCCACACGGAA
GAAGGCGAACAGCATGCAAAGAGTGCGGAGGATCAATGTATTGTGAGCAC
GGCAAACAGCGCAATCAGTGCAAGGCTTGCGGTGGGTGTGGAGTTTGTGA
GCACGGAAGAGTACGCTCCACATGTGTACCGTGTGGCGGCTCACAGATAT
GTGAGCATGGAAGAGTGCGCTCAACATGTGCACCATGTGGCGGCTCAAGA
ATATGTGAGCATGGGCGCATGCGCAGCTACTGCTTAGACTGTGGGGGTTC
GCAGATGTGCGAGCATGACAGAATTCGCGGTCAGTGCAGAGAATGTGGAG
GTTCTCAAATATGCAAACATGGAAAAATTCACGGTCGGTGCAGAGAGTGT
GGTGGTTCTCAGATCTGCGAGCACAATGCGCGTAGAGACAAGTGCAGGGT
TTGCAATCCTAATGTAACATGTCACGGCGAGGCTTGTCAGATATATGATA
ATGCAGAGCGTCGTCTGGCCGTCATCGATGGACTTTGCATCACGTGCTAA
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protein sequence of jgi.p|Trimin1|156866

>Trimin1|156866|e_gw1.2.73.1 ID=Trimin1|156866|e_gw1.2.73.1|Name=jgi.p|Trimin1|156866|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp
MKPSTQAQSVARTKSKLRKPRTKCPHGLANNGINCSQCGGTGVCEHGRKR
YFCIPCKGAGICEHNQRRNSCQLCGGSQICPHGRRRTACKECGGSMYCEH
GKQRNQCKACGGCGVCEHGRVRSTCVPCGGSQICEHGRVRSTCAPCGGSR
ICEHGRMRSYCLDCGGSQMCEHDRIRGQCRECGGSQICKHGKIHGRCREC
GGSQICEHNARRDKCRVCNPNVTCHGEACQIYDNAERRLAVIDGLCITC*
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mRNA from alignment at Contig_2:1570871..1571620-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_842 ID=mRNA_842|Name=jgi.p|Trimin1|156866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=750bp|location=Sequence derived from alignment at Contig_2:1570871..1571620- (Tribonema minus UTEX_B_3156 )
ATGAAGCCATCAACACAGGCACAAAGTGTTGCGAGAACTAAATCTAAACT
CAGGAAACCCAGGACTAAATGCCCACACGGACTCGCAAATAACGGTATCA
ACTGCAGTCAATGTGGAGGTACCGGTGTCTGTGAGCACGGGCGCAAACGT
TACTTTTGTATACCCTGTAAAGGAGCTGGGATTTGTGAACACAACCAGAG
ACGAAACTCTTGCCAATTGTGCGGAGGCAGCCAGATATGTCCACACGGAA
GAAGGCGAACAGCATGCAAAGAGTGCGGAGGATCAATGTATTGTGAGCAC
GGCAAACAGCGCAATCAGTGCAAGGCTTGCGGTGGGTGTGGAGTTTGTGA
GCACGGAAGAGTACGCTCCACATGTGTACCGTGTGGCGGCTCACAGATAT
GTGAGCATGGAAGAGTGCGCTCAACATGTGCACCATGTGGCGGCTCAAGA
ATATGTGAGCATGGGCGCATGCGCAGCTACTGCTTAGACTGTGGGGGTTC
GCAGATGTGCGAGCATGACAGAATTCGCGGTCAGTGCAGAGAATGTGGAG
GTTCTCAAATATGCAAACATGGAAAAATTCACGGTCGGTGCAGAGAGTGT
GGTGGTTCTCAGATCTGCGAGCACAATGCGCGTAGAGACAAGTGCAGGGT
TTGCAATCCTAATGTAACATGTCACGGCGAGGCTTGTCAGATATATGATA
ATGCAGAGCGTCGTCTGGCCGTCATCGATGGACTTTGCATCACGTGCTAA
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Coding sequence (CDS) from alignment at Contig_2:1570871..1571620-

>mRNA_842 ID=mRNA_842|Name=jgi.p|Trimin1|156866|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=750bp|location=Sequence derived from alignment at Contig_2:1570871..1571620- (Tribonema minus UTEX_B_3156 )
ATGAAGCCATCAACACAGGCACAAAGTGTTGCGAGAACTAAATCTAAACT
CAGGAAACCCAGGACTAAATGCCCACACGGACTCGCAAATAACGGTATCA
ACTGCAGTCAATGTGGAGGTACCGGTGTCTGTGAGCACGGGCGCAAACGT
TACTTTTGTATACCCTGTAAAGGAGCTGGGATTTGTGAACACAACCAGAG
ACGAAACTCTTGCCAATTGTGCGGAGGCAGCCAGATATGTCCACACGGAA
GAAGGCGAACAGCATGCAAAGAGTGCGGAGGATCAATGTATTGTGAGCAC
GGCAAACAGCGCAATCAGTGCAAGGCTTGCGGTGGGTGTGGAGTTTGTGA
GCACGGAAGAGTACGCTCCACATGTGTACCGTGTGGCGGCTCACAGATAT
GTGAGCATGGAAGAGTGCGCTCAACATGTGCACCATGTGGCGGCTCAAGA
ATATGTGAGCATGGGCGCATGCGCAGCTACTGCTTAGACTGTGGGGGTTC
GCAGATGTGCGAGCATGACAGAATTCGCGGTCAGTGCAGAGAATGTGGAG
GTTCTCAAATATGCAAACATGGAAAAATTCACGGTCGGTGCAGAGAGTGT
GGTGGTTCTCAGATCTGCGAGCACAATGCGCGTAGAGACAAGTGCAGGGT
TTGCAATCCTAATGTAACATGTCACGGCGAGGCTTGTCAGATATATGATA
ATGCAGAGCGTCGTCTGGCCGTCATCGATGGACTTTGCATCACGTGCTAA
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