mRNA_8385 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A836CFD3_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD3_9STRA) HSP 1 Score: 624 bits (1610), Expect = 1.770e-226 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1 Query: 1 VQDALYKRYVGIGCYSGDLAPGDRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900 VQDALYKRYVGIGCYSGDLAPGDRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS Sbjct: 1 VQDALYKRYVGIGCYSGDLAPGDRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 300
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A836CDM6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDM6_9STRA) HSP 1 Score: 454 bits (1167), Expect = 7.780e-159 Identity = 217/304 (71.38%), Postives = 248/304 (81.58%), Query Frame = 1 Query: 1 VQDALYKRYVGIGCYSGDLAPG----DRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900 VQ YKR+VG+GCY G +RE YA G+ +FDYQL FQP+ EL+ +VQ IAADGR PILNLEFLVDGD R ML+PI+ GEFD QL FA++AA GGI FMIRTLHEFNGDWYPWGLLYDP G Y NT+A+L+LAFRHVI+IFR +GAPV+FQLNIN NGLDDPRPFS FWPGT+GLESVAITSYNRA+STP HQY+ SFYDGF+ Y QVAALTDLPIWVAETGTTSYGTDKPAWL MFTS+ALDFPRV +VTFFMLNK+NE V TDWDLNT +++ F++G + LR LTS Sbjct: 2 VQAPAYKRFVGLGCYPGPAETNPSLQEREDTYANGERIFDYQLTFQPVLELEYGAVQQIAADGRIPILNLEFLVDGDPRPMLEPILAGEFDEQLEEFAQEAAAGGIRFMIRTLHEFNGDWYPWGLLYDPDKIGVYANTRANLSLAFRHVISIFRENGAPVEFQLNINAQNGLDDPRPFSAFWPGTLGLESVAITSYNRAFSTPNHQYTESFYDGFHGPYKQVAALTDLPIWVAETGTTSYGTDKPAWLMDMFTSLALDFPRVRQVTFFMLNKINENVLTDWDLNTEVDINAFVQGVQLLRELTS 305
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835YT36_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT36_9STRA) HSP 1 Score: 344 bits (883), Expect = 2.550e-115 Identity = 171/298 (57.38%), Postives = 209/298 (70.13%), Query Frame = 1 Query: 19 KRYVGIGCYSGD--LAPGDRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRA--MLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900 KRY+G+G Y G P RE Y G+ +FDYQL FQP+YEL ++AI A GR PILN+EF ++ T +LQ I+ G FDA L SFA+ A G F IRTLHEFNG+WY WGLLY+ ++ + NT L +F +I IF HGAP+ FQLNIN NNG DDPRPFSDFWPGT GL SVAITSYNRA+STPAH +S SF +GF +Y Q +LP+WVAETGTTSYGTDKP W R F +IAL FPRV +VTFF+ NKV EG DWDLNT E++ GF++G+ +R+LT+ Sbjct: 39 KRYIGVGIYPGQGPNTPARREAVYDGGRKMFDYQLTFQPVYELRYDEIEAIFASGREPILNMEFWMEDRTNTDPVLQHIVAGLFDAPLASFAQVCAAAGRRFTIRTLHEFNGNWYQWGLLYNAHDPTADKNTVHQLRESFSRIIGIFEHHGAPIDFQLNINSNNGYDDPRPFSDFWPGTQGLSSVAITSYNRAFSTPAHNFSESFGEGFQASYYQA----NLPVWVAETGTTSYGTDKPDWYRDAFKTIALQFPRVEQVTFFLYNKVLEGKNLDWDLNTPEDIKGFVDGYYAMRSLTA 332
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835YUE1_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE1_9STRA) HSP 1 Score: 280 bits (716), Expect = 1.090e-91 Identity = 137/218 (62.84%), Postives = 163/218 (74.77%), Query Frame = 1 Query: 244 IQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALT 897 IQGEFD L +FA++ G F +RTLHEFNGDWYPWG+LY+ G N+++ L AF HVI +FR G+PVKFQL+IN NNG D RPFS FWPGT GL++V+ITSYNRAYSTP HQYS SF GF DAY QV+ LTDLPIWVAET T+S TDKPAW+ + SIALDFPRV +VT+F+ NKVNEG TDWDLNT +V F++GF +R LT Sbjct: 1 IQGEFDDALRAFAQETTVRGRGFWVRTLHEFNGDWYPWGILYE--YQGDRGNSRSQLRDAFAHVITLFREEGSPVKFQLDINANNGKADKRPFSAFWPGTDGLDAVSITSYNRAYSTPDHQYSESFAAGFADAYQQVSELTDLPIWVAETATSSSHTDKPAWILDAWESIALDFPRVVQVTWFLSNKVNEGYLTDWDLNTEADVRAFVDGFLLMRQLT 216
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835Z228_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z228_9STRA) HSP 1 Score: 243 bits (619), Expect = 3.230e-77 Identity = 116/187 (62.03%), Postives = 137/187 (73.26%), Query Frame = 1 Query: 340 GDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900 GDWYPWGLLY G NT A L A + VI+IFR GAPV FQ+N+N +NG DDPRP ++ WPG GL++VAITSYNRA+STP HQY+ SF DG Y QV LT LPIW+AET TTS+GTDKPAWLRQMF +A FPRVT+VTFF+ NKV EG DWDLNT EEV FI+G+ L+A+ + Sbjct: 12 GDWYPWGLLYRQRPNGVGANTVALLRQALQRVISIFRTRGAPVLFQMNLNDHNGFDDPRPMAELWPGDEGLDAVAITSYNRAFSTPNHQYTRSFRDGLTPMYQQVTELTKLPIWIAETATTSFGTDKPAWLRQMFNDVARAFPRVTQVTFFLYNKVVEGKLLDWDLNTPEEVQAFIDGYHDLQAIVA 198
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A2N0KHE4_9CHLR (GH26 domain-containing protein n=1 Tax=SAR202 cluster bacterium Casp-Chloro-G3 TaxID=1926605 RepID=A0A2N0KHE4_9CHLR) HSP 1 Score: 207 bits (527), Expect = 1.690e-62 Identity = 113/262 (43.13%), Postives = 153/262 (58.40%), Query Frame = 1 Query: 106 DYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRA 891 D+ LLFQ I E+D + V+ DGR ILNLEF D+ A L I +G +D +L S A +R LHEFNG+WY WG+LY N K+D A+R+++ F PVKFQLN N NG +D PFS+ +PG ++ V IT+YNRAY+ HQY +F + F DAY QV +LT+ PI VAE +TS G +KP W+ + F S+ DFP+V +VT+F N+ + DWDLNT EE++ F G + Sbjct: 7 DHVLLFQKIGEIDYSKVRDQLDDGRAVILNLEF---EDSFANLAAIPEGHYDEELDSLARAIEADNREIWLRPLHEFNGNWYNWGVLYPG-------NNKSDFAPAWRYLVTFFMNRDVPVKFQLNYNRFNGENDTTPFSEVYPGDEYVDMVVITTYNRAYTDEWHQYWRTFSEEFQDAYDQVTSLTNKPIGVAEMSSTSNGGNKPEWIEEAFRSLDDDFPQVEQVTWFFYNRPVGDLTWDWDLNTDEEIEAFKHGLSLIEV 258
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A836CL01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL01_9STRA) HSP 1 Score: 201 bits (511), Expect = 8.540e-61 Identity = 105/188 (55.85%), Postives = 129/188 (68.62%), Query Frame = 1 Query: 340 GDWYPWGLLYDPYNTGS--YLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALT 897 G+WY WG+LY + Y NT+ L AF+ VI IF + APV+FQLNIN NNG DD PF+ +WPGTVGL SVAIT+YNRA STP+HQ S F D F AY QV ALT LPIWVAETGTTS TDKP W+++ F IAL FP+V +VT+F+ +K+ EGV TDWD++ +V + L ALT Sbjct: 14 GNWYQWGILYGSRSNPKPQYPNTQTRLKDAFKRVIKIFTDNKAPVQFQLNINANNGYDDKTPFATWWPGTVGLSSVAITAYNRACSTPSHQDSKPFRDRFSAAYNQVKALTPLPIWVAETGTTSCKTDKPTWVKEAFRDIALLFPQVVQVTWFLTDKLQEGVVTDWDMHDGTKVSAL--HYACLCALT 199
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835Z8N1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N1_9STRA) HSP 1 Score: 162 bits (410), Expect = 2.350e-43 Identity = 104/283 (36.75%), Postives = 145/283 (51.24%), Query Frame = 1 Query: 61 PGDRELAYAKGQH--LFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGS-YLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900 PG L +GQ+ D L+FQ + +L V G T L LEF L+ I G D L FA +A G F IR LHEFNGDWYPWG+ D G+ + + +D A++H++ IFR APV+FQ N +N DD PF +F+ G ++ V + YN A P H S +F D Y Q+ T + ++E TTSYG DKPAW++ ++SIA F R+T V +F+ NK + +WDLN E +I G + R+ T+ Sbjct: 130 PGGTPLGTREGQYGVKVDSLLMFQKVTDLHFDWVATEMNRGHTVQLVLEFF-----GTSLKDIAAGGSDGVLSDFANKAKTDGRQFYIRPLHEFNGDWYPWGIYVD----GTLHTDLLSDFKAAYKHIVTIFRNAKAPVQFQQGYNNSNPRDDKTPFKNFYVGDDYVDMVCFSLYNFA-GIPNHS-SGTFTKLAGDFYNQMTLATSKDLCISEMSTTSYGVDKPAWIKDTWSSIANQFTRITTVNWFLENKPDG----NWDLNNGPEQQAWINGLNSFRSTTA 397
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA) HSP 1 Score: 150 bits (378), Expect = 5.090e-40 Identity = 86/213 (40.38%), Postives = 118/213 (55.40%), Query Frame = 1 Query: 232 LQPIIQGEFDAQLHSFAEQA-AQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTD-LPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGF 864 LQ II G FD QL+ F + + G IR LHEFNGDWYPWG D +T ++ AFRHV+++FR GA VKFQL N +N DD + F D++PG ++ + + YNRA H SF + F Y ++A+L P+ VAET +TS+G DK W+R F ++ F RV + +F++NK DWDLN+ E F Sbjct: 66 LQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKR-------AFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAG-----DWDLNSDSERHAF 266
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A836CJS0_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS0_9STRA) HSP 1 Score: 154 bits (390), Expect = 8.550e-40 Identity = 89/231 (38.53%), Postives = 128/231 (55.41%), Query Frame = 1 Query: 232 LQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLP---------IWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALT 897 L+ I G +D L + A A G +R LHEFNGDWY WG+ Y+ N G K AFR V+N R++GAP K+Q+ N NG P P SDF+ G ++ + +T+YNRA ++ S S+YD DAY + LT LP + V E GTT+Y T+KP W+ + + ++A F RVT +T+F+ NK G +WDLNT E+D ++ G++ + T Sbjct: 276 LRQINDGAYDEHLKALARTAKADGRQIYLRPLHEFNGDWYDWGV-YNAKNNGDIQMFKN----AFRRVVNTLRSNGAPFKYQIGYNVGNGQGKPTPLSDFYVGDSYVDQICVTAYNRA-GLDGNEVSRSYYDILSDAYDK---LTHLPAGVSSNTKELCVGELGTTAYNTNKPRWIAETWDTLATKFTRVTTITWFLENK---GA-ANWDLNTPPEIDAWVAGYKRFKETT 493 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8385 ID=mRNA_8385|Name=jgi.p|Trimin1|149193|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=900bp|location=Sequence derived from alignment at Contig_36:549392..553537- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGCAGGATGCATTATATAAGCGCTACGTGGGCATTGGTTGCTACTCCGGback to top protein sequence of jgi.p|Trimin1|149193 >Trimin1|149193|gw1.36.81.1 ID=Trimin1|149193|gw1.36.81.1|Name=jgi.p|Trimin1|149193|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=300bp VQDALYKRYVGIGCYSGDLAPGDRELAYAKGQHLFDYQLLFQPIYELDLTback to top mRNA from alignment at Contig_36:549392..553537- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8385 ID=mRNA_8385|Name=jgi.p|Trimin1|149193|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4146bp|location=Sequence derived from alignment at Contig_36:549392..553537- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_36:549392..553537- >mRNA_8385 ID=mRNA_8385|Name=jgi.p|Trimin1|149193|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=900bp|location=Sequence derived from alignment at Contig_36:549392..553537- (Tribonema minus UTEX_B_3156 )back to top |