mRNA_8385 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149193
Unique NamemRNA_8385
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A836CFD3_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD3_9STRA)

HSP 1 Score: 624 bits (1610), Expect = 1.770e-226
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1
Query:    1 VQDALYKRYVGIGCYSGDLAPGDRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900
            VQDALYKRYVGIGCYSGDLAPGDRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS
Sbjct:    1 VQDALYKRYVGIGCYSGDLAPGDRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 300          
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A836CDM6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDM6_9STRA)

HSP 1 Score: 454 bits (1167), Expect = 7.780e-159
Identity = 217/304 (71.38%), Postives = 248/304 (81.58%), Query Frame = 1
Query:    1 VQDALYKRYVGIGCYSGDLAPG----DRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900
            VQ   YKR+VG+GCY G         +RE  YA G+ +FDYQL FQP+ EL+  +VQ IAADGR PILNLEFLVDGD R ML+PI+ GEFD QL  FA++AA GGI FMIRTLHEFNGDWYPWGLLYDP   G Y NT+A+L+LAFRHVI+IFR +GAPV+FQLNIN  NGLDDPRPFS FWPGT+GLESVAITSYNRA+STP HQY+ SFYDGF+  Y QVAALTDLPIWVAETGTTSYGTDKPAWL  MFTS+ALDFPRV +VTFFMLNK+NE V TDWDLNT  +++ F++G + LR LTS
Sbjct:    2 VQAPAYKRFVGLGCYPGPAETNPSLQEREDTYANGERIFDYQLTFQPVLELEYGAVQQIAADGRIPILNLEFLVDGDPRPMLEPILAGEFDEQLEEFAQEAAAGGIRFMIRTLHEFNGDWYPWGLLYDPDKIGVYANTRANLSLAFRHVISIFRENGAPVEFQLNINAQNGLDDPRPFSAFWPGTLGLESVAITSYNRAFSTPNHQYTESFYDGFHGPYKQVAALTDLPIWVAETGTTSYGTDKPAWLMDMFTSLALDFPRVRQVTFFMLNKINENVLTDWDLNTEVDINAFVQGVQLLRELTS 305          
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835YT36_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT36_9STRA)

HSP 1 Score: 344 bits (883), Expect = 2.550e-115
Identity = 171/298 (57.38%), Postives = 209/298 (70.13%), Query Frame = 1
Query:   19 KRYVGIGCYSGD--LAPGDRELAYAKGQHLFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRA--MLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900
            KRY+G+G Y G     P  RE  Y  G+ +FDYQL FQP+YEL    ++AI A GR PILN+EF ++  T    +LQ I+ G FDA L SFA+  A  G  F IRTLHEFNG+WY WGLLY+ ++  +  NT   L  +F  +I IF  HGAP+ FQLNIN NNG DDPRPFSDFWPGT GL SVAITSYNRA+STPAH +S SF +GF  +Y Q     +LP+WVAETGTTSYGTDKP W R  F +IAL FPRV +VTFF+ NKV EG   DWDLNT E++ GF++G+  +R+LT+
Sbjct:   39 KRYIGVGIYPGQGPNTPARREAVYDGGRKMFDYQLTFQPVYELRYDEIEAIFASGREPILNMEFWMEDRTNTDPVLQHIVAGLFDAPLASFAQVCAAAGRRFTIRTLHEFNGNWYQWGLLYNAHDPTADKNTVHQLRESFSRIIGIFEHHGAPIDFQLNINSNNGYDDPRPFSDFWPGTQGLSSVAITSYNRAFSTPAHNFSESFGEGFQASYYQA----NLPVWVAETGTTSYGTDKPDWYRDAFKTIALQFPRVEQVTFFLYNKVLEGKNLDWDLNTPEDIKGFVDGYYAMRSLTA 332          
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835YUE1_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE1_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.090e-91
Identity = 137/218 (62.84%), Postives = 163/218 (74.77%), Query Frame = 1
Query:  244 IQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALT 897
            IQGEFD  L +FA++    G  F +RTLHEFNGDWYPWG+LY+    G   N+++ L  AF HVI +FR  G+PVKFQL+IN NNG  D RPFS FWPGT GL++V+ITSYNRAYSTP HQYS SF  GF DAY QV+ LTDLPIWVAET T+S  TDKPAW+   + SIALDFPRV +VT+F+ NKVNEG  TDWDLNT  +V  F++GF  +R LT
Sbjct:    1 IQGEFDDALRAFAQETTVRGRGFWVRTLHEFNGDWYPWGILYE--YQGDRGNSRSQLRDAFAHVITLFREEGSPVKFQLDINANNGKADKRPFSAFWPGTDGLDAVSITSYNRAYSTPDHQYSESFAAGFADAYQQVSELTDLPIWVAETATSSSHTDKPAWILDAWESIALDFPRVVQVTWFLSNKVNEGYLTDWDLNTEADVRAFVDGFLLMRQLT 216          
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835Z228_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z228_9STRA)

HSP 1 Score: 243 bits (619), Expect = 3.230e-77
Identity = 116/187 (62.03%), Postives = 137/187 (73.26%), Query Frame = 1
Query:  340 GDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900
            GDWYPWGLLY     G   NT A L  A + VI+IFR  GAPV FQ+N+N +NG DDPRP ++ WPG  GL++VAITSYNRA+STP HQY+ SF DG    Y QV  LT LPIW+AET TTS+GTDKPAWLRQMF  +A  FPRVT+VTFF+ NKV EG   DWDLNT EEV  FI+G+  L+A+ +
Sbjct:   12 GDWYPWGLLYRQRPNGVGANTVALLRQALQRVISIFRTRGAPVLFQMNLNDHNGFDDPRPMAELWPGDEGLDAVAITSYNRAFSTPNHQYTRSFRDGLTPMYQQVTELTKLPIWIAETATTSFGTDKPAWLRQMFNDVARAFPRVTQVTFFLYNKVVEGKLLDWDLNTPEEVQAFIDGYHDLQAIVA 198          
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A2N0KHE4_9CHLR (GH26 domain-containing protein n=1 Tax=SAR202 cluster bacterium Casp-Chloro-G3 TaxID=1926605 RepID=A0A2N0KHE4_9CHLR)

HSP 1 Score: 207 bits (527), Expect = 1.690e-62
Identity = 113/262 (43.13%), Postives = 153/262 (58.40%), Query Frame = 1
Query:  106 DYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRA 891
            D+ LLFQ I E+D + V+    DGR  ILNLEF    D+ A L  I +G +D +L S A           +R LHEFNG+WY WG+LY         N K+D   A+R+++  F     PVKFQLN N  NG +D  PFS+ +PG   ++ V IT+YNRAY+   HQY  +F + F DAY QV +LT+ PI VAE  +TS G +KP W+ + F S+  DFP+V +VT+F  N+    +  DWDLNT EE++ F  G   +  
Sbjct:    7 DHVLLFQKIGEIDYSKVRDQLDDGRAVILNLEF---EDSFANLAAIPEGHYDEELDSLARAIEADNREIWLRPLHEFNGNWYNWGVLYPG-------NNKSDFAPAWRYLVTFFMNRDVPVKFQLNYNRFNGENDTTPFSEVYPGDEYVDMVVITTYNRAYTDEWHQYWRTFSEEFQDAYDQVTSLTNKPIGVAEMSSTSNGGNKPEWIEEAFRSLDDDFPQVEQVTWFFYNRPVGDLTWDWDLNTDEEIEAFKHGLSLIEV 258          
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A836CL01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL01_9STRA)

HSP 1 Score: 201 bits (511), Expect = 8.540e-61
Identity = 105/188 (55.85%), Postives = 129/188 (68.62%), Query Frame = 1
Query:  340 GDWYPWGLLYDPYNTGS--YLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALT 897
            G+WY WG+LY   +     Y NT+  L  AF+ VI IF  + APV+FQLNIN NNG DD  PF+ +WPGTVGL SVAIT+YNRA STP+HQ S  F D F  AY QV ALT LPIWVAETGTTS  TDKP W+++ F  IAL FP+V +VT+F+ +K+ EGV TDWD++   +V      +  L ALT
Sbjct:   14 GNWYQWGILYGSRSNPKPQYPNTQTRLKDAFKRVIKIFTDNKAPVQFQLNINANNGYDDKTPFATWWPGTVGLSSVAITAYNRACSTPSHQDSKPFRDRFSAAYNQVKALTPLPIWVAETGTTSCKTDKPTWVKEAFRDIALLFPQVVQVTWFLTDKLQEGVVTDWDMHDGTKVSAL--HYACLCALT 199          
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835Z8N1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.350e-43
Identity = 104/283 (36.75%), Postives = 145/283 (51.24%), Query Frame = 1
Query:   61 PGDRELAYAKGQH--LFDYQLLFQPIYELDLTSVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGS-YLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS 900
            PG   L   +GQ+    D  L+FQ + +L    V      G T  L LEF         L+ I  G  D  L  FA +A   G  F IR LHEFNGDWYPWG+  D    G+ + +  +D   A++H++ IFR   APV+FQ   N +N  DD  PF +F+ G   ++ V  + YN A   P H  S +F     D Y Q+   T   + ++E  TTSYG DKPAW++  ++SIA  F R+T V +F+ NK +     +WDLN   E   +I G  + R+ T+
Sbjct:  130 PGGTPLGTREGQYGVKVDSLLMFQKVTDLHFDWVATEMNRGHTVQLVLEFF-----GTSLKDIAAGGSDGVLSDFANKAKTDGRQFYIRPLHEFNGDWYPWGIYVD----GTLHTDLLSDFKAAYKHIVTIFRNAKAPVQFQQGYNNSNPRDDKTPFKNFYVGDDYVDMVCFSLYNFA-GIPNHS-SGTFTKLAGDFYNQMTLATSKDLCISEMSTTSYGVDKPAWIKDTWSSIANQFTRITTVNWFLENKPDG----NWDLNNGPEQQAWINGLNSFRSTTA 397          
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.090e-40
Identity = 86/213 (40.38%), Postives = 118/213 (55.40%), Query Frame = 1
Query:  232 LQPIIQGEFDAQLHSFAEQA-AQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTD-LPIWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGF 864
            LQ II G FD QL+ F +   + G     IR LHEFNGDWYPWG   D  +T ++         AFRHV+++FR  GA VKFQL  N +N  DD + F D++PG   ++ +  + YNRA     H    SF + F   Y ++A+L    P+ VAET +TS+G DK  W+R  F ++   F RV +  +F++NK       DWDLN+  E   F
Sbjct:   66 LQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDGNDTDTFKR-------AFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGGDKAQWIRDAFDAVVNQFTRVEQCNWFLINKAG-----DWDLNSDSERHAF 266          
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Match: A0A836CJS0_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 8.550e-40
Identity = 89/231 (38.53%), Postives = 128/231 (55.41%), Query Frame = 1
Query:  232 LQPIIQGEFDAQLHSFAEQAAQGGIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFRAHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPAHQYSLSFYDGFYDAYTQVAALTDLP---------IWVAETGTTSYGTDKPAWLRQMFTSIALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALT 897
            L+ I  G +D  L + A  A   G    +R LHEFNGDWY WG+ Y+  N G     K     AFR V+N  R++GAP K+Q+  N  NG   P P SDF+ G   ++ + +T+YNRA     ++ S S+YD   DAY +   LT LP         + V E GTT+Y T+KP W+ + + ++A  F RVT +T+F+ NK   G   +WDLNT  E+D ++ G++  +  T
Sbjct:  276 LRQINDGAYDEHLKALARTAKADGRQIYLRPLHEFNGDWYDWGV-YNAKNNGDIQMFKN----AFRRVVNTLRSNGAPFKYQIGYNVGNGQGKPTPLSDFYVGDSYVDQICVTAYNRA-GLDGNEVSRSYYDILSDAYDK---LTHLPAGVSSNTKELCVGELGTTAYNTNKPRWIAETWDTLATKFTRVTTITWFLENK---GA-ANWDLNTPPEIDAWVAGYKRFKETT 493          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149193 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFD3_9STRA1.770e-226100.00Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A836CDM6_9STRA7.780e-15971.38Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YT36_9STRA2.550e-11557.38Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YUE1_9STRA1.090e-9162.84Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835Z228_9STRA3.230e-7762.03Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A2N0KHE4_9CHLR1.690e-6243.13GH26 domain-containing protein n=1 Tax=SAR202 clus... [more]
A0A836CL01_9STRA8.540e-6155.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8N1_9STRA2.350e-4336.75Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835YT60_9STRA5.090e-4040.38Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A836CJS0_9STRA8.550e-4038.53Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:549392..553537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149193|gw1.36.81.1
DescriptionBelongs to the glycosyl hydrolase 26 family
COG categoryG
Max annot lvl2|Bacteria
EggNOG OGsCOG4124@1|root,COG4124@2|Bacteria
Evalue1.84e-24
Seed ortholog1123400.KB904752_gene841
Hectar predicted targeting categoryother localisation
TranscriptId149515
TrackFilteredModels1
ProteinId149193
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149193gene_8385Tribonema minus UTEX_B_3156 geneContig_36 549392..553537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149193Trimin1|149193|gw1.36.81.1Tribonema minus UTEX_B_3156 polypeptideContig_36 549392..553537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8385_6exon_8385_6Tribonema minus UTEX_B_3156 exonContig_36 549392..549442 -
exon_8385_5exon_8385_5Tribonema minus UTEX_B_3156 exonContig_36 549930..550084 -
exon_8385_4exon_8385_4Tribonema minus UTEX_B_3156 exonContig_36 550475..550517 -
exon_8385_3exon_8385_3Tribonema minus UTEX_B_3156 exonContig_36 551552..551703 -
exon_8385_2exon_8385_2Tribonema minus UTEX_B_3156 exonContig_36 552038..552196 -
exon_8385_1exon_8385_1Tribonema minus UTEX_B_3156 exonContig_36 553198..553537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8385CDS_8385Tribonema minus UTEX_B_3156 CDSContig_36 553198..553537 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8385 ID=mRNA_8385|Name=jgi.p|Trimin1|149193|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=900bp|location=Sequence derived from alignment at Contig_36:549392..553537- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCAGGATGCATTATATAAGCGCTACGTGGGCATTGGTTGCTACTCCGG
CGACCTTGCACCCGGGGATAGGGAGCTAGCCTACGCGAAGGGCCAGCATC
TATTCGACTATCAACTCCTGTTTCAGCCCATCTACGAATTGGATCTCACG
TCGGTGCAGGCGATCGCAGCAGACGGCCGCACGCCGATACTCAACCTGGA
ATTTCTGGTGGATGGGGATACACGGGCAATGCTGCAGCCCATCATTCAGG
GGGAATTTGACGCTCAGCTGCATTCATTTGCGGAGCAGGCAGCGCAGGGA
GGCATCCACTTCATGATTCGGACTTTGCACGAGTTCAATGGCGACTGGTA
CCCGTGGGGTCTTCTGTACGATCCATACAACACAGGCAGCTACCTCAACA
CCAAGGCGGACCTCACACTCGCATTTCGACATGTCATCAACATCTTCCGG
GCACATGGGGCACCTGTGAAGTTCCAGTTGAACATCAATGGCAACAATGG
ACTGGATGATCCTCGGCCATTCAGCGACTTCTGGCCAGGGACGGTGGGTC
TGGAGTCTGTGGCCATCACCAGCTATAACAGGGCCTACAGCACACCCGCA
CACCAGTACTCCCTGTCCTTCTATGACGGGTTTTACGATGCCTATACTCA
GGTTGCGGCACTCACGGACCTTCCCATCTGGGTGGCTGAGACAGGCACAA
CATCGTACGGGACGGACAAACCAGCATGGCTGCGGCAGATGTTCACGTCA
ATCGCGCTCGACTTCCCCCGCGTGACGGAAGTTACATTCTTCATGCTCAA
CAAGGTCAATGAAGGCGTCTACACAGACTGGGATCTCAACACATGGGAGG
AGGTGGACGGCTTCATCGAGGGCTTCCGCACTTTGCGCGCCCTAACTAGC
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protein sequence of jgi.p|Trimin1|149193

>Trimin1|149193|gw1.36.81.1 ID=Trimin1|149193|gw1.36.81.1|Name=jgi.p|Trimin1|149193|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=300bp
VQDALYKRYVGIGCYSGDLAPGDRELAYAKGQHLFDYQLLFQPIYELDLT
SVQAIAADGRTPILNLEFLVDGDTRAMLQPIIQGEFDAQLHSFAEQAAQG
GIHFMIRTLHEFNGDWYPWGLLYDPYNTGSYLNTKADLTLAFRHVINIFR
AHGAPVKFQLNINGNNGLDDPRPFSDFWPGTVGLESVAITSYNRAYSTPA
HQYSLSFYDGFYDAYTQVAALTDLPIWVAETGTTSYGTDKPAWLRQMFTS
IALDFPRVTEVTFFMLNKVNEGVYTDWDLNTWEEVDGFIEGFRTLRALTS
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mRNA from alignment at Contig_36:549392..553537-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8385 ID=mRNA_8385|Name=jgi.p|Trimin1|149193|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4146bp|location=Sequence derived from alignment at Contig_36:549392..553537- (Tribonema minus UTEX_B_3156 )
GTGCAGGATGCATTATATAAGCGCTACGTGGGCATTGGTTGCTACTCCGG CGACCTTGCACCCGGGGATAGGGAGCTAGCCTACGCGAAGGGCCAGCATC TATTCGACTATCAACTCCTGTTTCAGCCCATCTACGAATTGGATCTCACG TCGGTGCAGGCGATCGCAGCAGACGGCCGCACGCCGATACTCAACCTGGA ATTTCTGGTGGATGGGGATACACGGGCAATGCTGCAGCCCATCATTCAGG GGGAATTTGACGCTCAGCTGCATTCATTTGCGGAGCAGGCAGCGCAGGGA GGCATCCACTTCATGATTCGGACTTTGCACGAGTTCAATGGTAAGTCCTG CATTTCAGGTTGAGATGTAGGCACTACTAGTAGGGGACCATCCATGCATA TTGACCACCACTCATACTAGTAGCTTAGGCAGCTGGTAGCCATGCTTCAA AGATAACGAATTTGGGCATAGTCAAAGTGATGTCACACATGCAGGAACAC GCCGCAAGCAGACACACTTTCTCTTGCCCACTGGCAACCACAGGCTCAGC CTGGCCAGTGCGGATCATTTTATCGCTGACAATCATATCGCTGACCATCG CTGACCATCATTAAATTTTGCATTTGGAGTCCAGGAGGTGGGCAGCTGCC ATGGCTGCAGCAAGCAAGAGTGTAGTAGCAGTTGTACTGATGTAAGAACT AGAGCAATGCCCGTTTGAATGTAATGCGTTGTGACATCAGCGAGATGCTC GAGCAGACAGTTGAGTTGCAGACCAGCGAACGCAGCTGACGCCTCAACTT CTGCCAATGCTTACAACCGTCATGAGCACCATGTCGTGATCTCAGCTGCA GGCATCTCTGCCAACCCGAATCAGAGCAAGCAAGCACATGACCCATGATG CTGAGGCACCAATGTGGACTTTGCTGATGCCTGAATGCTGGTGGTGGCTG AAGCAATTGTTGGGGTTGAACTTGAGTACAGTAGTGTTTACCACTCATTT TGCTGTAAATAGTATGACCGTGTCACTCCGCTGTTTGCCACGTGCACTTC TAAAGTGCGTTGTACTTCAAGTAGCTTGCTGCCAGCTCTTTGCTGCAATA TTTGTGCCAGTCAATCTTACTTGCCAGTAGCTGTCAACCAACTGTCCTGG CACTCAGCAATACTACCTGTCGAGTACTCACGGAGCTAACGTACTACAGT ATTACCGGTTTACATTCATTGAAACAAATCAAAACATCGTAGAGGTCATA TAATGCGTCTGCGATGCATATTCGTATCGATGGCACCATTTGTGCGGTGC AATATCAACTTCTTCACTAACGACACTCCCTTGTGTCACAGGCGACTGGT ACCCGTGGGGTCTTCTGTACGATCCATACAACACAGGCAGCTACCTCAAC ACCAAGGCGGACCTCACACTCGCATTTCGACATGTCATCAACATCTTCCG GGCACATGGGGCACCTGTGAAGTTCCAGTTGAACATCAATGGCAACAATG GTGAGCCCCCGCTTTTTGTTTCGTTAGAATCAGATTTACATCTGAGTTTG TTTCGCCCTACAAGCATGCGAAGCAGCCTCCGTGCATTGTGCAAGGCTTG CAGCCATGTCTAGATCAGAGCATAAAAAATTCTCGATGCTCTTCACTGCT GCTACAACCACAATCACGGCTCATCGATGCTGCAGTGCGTTCAAAAGCTG GAGTTTATTAGATTGCGTTATGCGGCAGGACCGCATGATTGGGAACCTTG TGGGCAGAACAGCGGGCTCAGAGTCAATGAACATACTATGCCATGTCATA CAAACAAGGAGTGTGATGTGTATGCGTGCCACAGGACTGGATGATCCTCG GCCATTCAGCGACTTCTGGCCAGGGACGGTGGGTCTGGAGTCTGTGGCCA TCACCAGCTATAACAGGGCCTACAGCACACCCGCACACCAGTACTCCCTG TCCTTCTATGACGGGTTTTACGATGCCTATACTCAGGTGGGTAGAAGCTG TGCACTGCGCCACCAGTGCTGCATAGTACACCTAATTTTGGTGCATCAAT GGCAGTTACCATGCCACACCTCACCGCCGCACTTGTTGTGCAAGTACTCA ATGACAGCGCTAACAGCGCATCACAATCACACTGTACAGTGCACTCAATA TGTACAGTATATTCCGGGGACGCCGGCTGTTGTAGCGTGCAAGAGTGGTG GAACCAAATGGAGTGTCGGTGCACTTTCCTGGCCTTACATCAGCTCTATG GTTCCAGTAAAAGTAGATGTTGTTGTTGAAGTTGAAGTGCGGCCATGTCG AAATCAGAGGGTCACAGTTGTGTGCATAAATTCTTCATGCAGGAGTTGTG AAACTGAAGGGACTAGTCAGCACGATGTTGATGCCTTCTGACCCATTGGC GCGTAGTGTCATTATGCAATTATGCAATGGCCGATCTGCTTTGGGGTGCA TGAGCTGCAATTACAAATCTGTACTGACCTGTAGCAGGTTGCTTGGGGCA CCGGCACGCGCTACACTGTAACCATAACAGATAGGATGCACAAAACGTTT TGGTGCATGTTATGGCTAGCCGGCCACGCACCAACTAAATTACTGTGCTT ACTGTCCTCTGCAGATCTGACACTTCAGCTACTGCACTTGTGATAAGCCA ACATTGAAGTGTTTCAAAGATGGAGCACAGTGACGCATGTATTGAGGCAT GACACAGAGAACAAAACAAACGTCTATTGTGAAGTTGCACCACCTCTGCC TAATGCAGCTGCGGAGCCCTAACCTTACAAGACGCGGAGAGCAAAGTGGT TGATGCCCCAGCACTGACCACGTACACTGTGGCACTTGGTGCATTGAGTG GCACTGATTCAGCGTTGCTGAACGCCGACGACAATGCTACTTGGTACATC AGTAGCGTCAACCATGGCTCCTGTCATCACAATGATGAGGTGCATCGCAT ATGCTGAGCACTGATTGACTATTCCGCAAAACACTACACCGTGCTGCCAC TGCTGCAATTTTGGCTGCAGGTTGCGGCACTCACGGACCTTCCCATCTGG GTGGCTGAGACAGGTACGTGCATGAACCCTTGCCAGCATTCACGTGTACG GCGTCTCACAGCTGTGTTACTGATGTGTGTAAAATTTAAAGGTATGCCGT CGCATGTGTTCTGTTGAGTCTCACTGAGCTTGACGAACAAAGACACTGAA GCGTGCTTTGCAGCGTTGACCTTCCCAAGAGCACATTCACCCGATTCTCA GTGGAACTGGTAACTGGTCAGAAATACATGTAGTTTTGTCACAAACTTCA AAGCATGCAATACCGTGACACCGACCTGGTAAGCCCACTCCGAGTCTCGT TTGCCAGCTGTCGCAACGGTTGAGCGGGCCAAGAACTTCGTCACCTGATT CAGAAGTGATGACTGTCTCATGTAAGTTGTGTTGTCACGTGTATGATTTC CAGGCACAACATCGTACGGGACGGACAAACCAGCATGGCTGCGGCAGATG TTCACGTCAATCGCGCTCGACTTCCCCCGCGTGACGGAAGTTACATTCTT CATGCTCAACAAGGTCAATGAAGGCGTCTACACAGACTGGGATCTCAACA CATGGGAGGTGAGGGCCGGCCACATTGGTGAAGCTATTGGCACTCAATAC CACAACTCAATACCACATCGGCTGTTGTAATACCTGCCCCCCAAACTGTG CAAGTCTGCCCCAGGGCCTGTATTCCAGCGGTTCGGCGCATGTTGATGTA AACGCTGCTCAGGCGTGACCAGGCTGGGGTGATTTGAAGTTCAAGCATTA TGCAAGATCAAGCTGTTTTTCAACGACACCATTGTTGACATTCTCAATGG TTTGTGATACTCAGTAGTACTTCCATGTACCACAACAAGGACTGAGCGAT CCTGGCATATCCTCCGAAGTGCTGTATGCCTTTTTGCAGCAGTCCTTCCA GGTCCCCTGGGCCGTTAAACTTTGTTGATGTAATTTCATGCGTAGACCGC CAAAGTCTGCTTCCGCTGCGCCTGAGTACATGCAATCCGAGTATTACTTA CTCGCTGGCGCGTGCGCTTTGTGCTACCTTATCACTCATTTGCAGGAGGT GGACGGCTTCATCGAGGGCTTCCGCACTTTGCGCGCCCTAACTAGC
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Coding sequence (CDS) from alignment at Contig_36:549392..553537-

>mRNA_8385 ID=mRNA_8385|Name=jgi.p|Trimin1|149193|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=900bp|location=Sequence derived from alignment at Contig_36:549392..553537- (Tribonema minus UTEX_B_3156 )
GTGCAGGATGCATTATATAAGCGCTACGTGGGCATTGGTTGCTACTCCGG
CGACCTTGCACCCGGGGATAGGGAGCTAGCCTACGCGAAGGGCCAGCATC
TATTCGACTATCAACTCCTGTTTCAGCCCATCTACGAATTGGATCTCACG
TCGGTGCAGGCGATCGCAGCAGACGGCCGCACGCCGATACTCAACCTGGA
ATTTCTGGTGGATGGGGATACACGGGCAATGCTGCAGCCCATCATTCAGG
GGGAATTTGACGCTCAGCTGCATTCATTTGCGGAGCAGGCAGCGCAGGGA
GGCATCCACTTCATGATTCGGACTTTGCACGAGTTCAATGGCGACTGGTA
CCCGTGGGGTCTTCTGTACGATCCATACAACACAGGCAGCTACCTCAACA
CCAAGGCGGACCTCACACTCGCATTTCGACATGTCATCAACATCTTCCGG
GCACATGGGGCACCTGTGAAGTTCCAGTTGAACATCAATGGCAACAATGG
ACTGGATGATCCTCGGCCATTCAGCGACTTCTGGCCAGGGACGGTGGGTC
TGGAGTCTGTGGCCATCACCAGCTATAACAGGGCCTACAGCACACCCGCA
CACCAGTACTCCCTGTCCTTCTATGACGGGTTTTACGATGCCTATACTCA
GGTTGCGGCACTCACGGACCTTCCCATCTGGGTGGCTGAGACAGGCACAA
CATCGTACGGGACGGACAAACCAGCATGGCTGCGGCAGATGTTCACGTCA
ATCGCGCTCGACTTCCCCCGCGTGACGGAAGTTACATTCTTCATGCTCAA
CAAGGTCAATGAAGGCGTCTACACAGACTGGGATCTCAACACATGGGAGG
AGGTGGACGGCTTCATCGAGGGCTTCCGCACTTTGCGCGCCCTAACTAGC
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