mRNA_8380 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|61456
Unique Name	mRNA_8380
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|61456 vs. uniprot
Match: A0A835YXE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE3_9STRA)

HSP 1 Score: 387 bits (993), Expect = 7.140e-133
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 3

Query:   54 MKCIAAIVAGLLATASASATPKFGKWISVRGGGNVQDDARDFGNRAQRRGEQGVNKVKRRSEELRPEQIVPLTVGVVAIAQGLDMLINPQRSGRFFDNSYVITDTDKTNVSMIGARELIKGLAIAGIAINSDGDSLRLANAITLGSTVIEEGVDQLTARADGFRGVSGAYRNLNSAFRVLVSCATLWTMWSLKGKPTPDDY 656
            MKCIAAIVAGLLATASASATPKFGKWISVRGGGNVQDDARDFGNRAQRRGEQGVNKVKRRSEELRPEQIVPLTVGVVAIAQGLDMLINPQRSGRFFDNSYVITDTDKTNVSMIGARELIKGLAIAGIAINSDGDSLRLANAITLGSTVIEEGVDQLTARADGFRGVSGAYRNLNSAFRVLVSCATLWTMWSLKGKPTPDDY
Sbjct:    1 MKCIAAIVAGLLATASASATPKFGKWISVRGGGNVQDDARDFGNRAQRRGEQGVNKVKRRSEELRPEQIVPLTVGVVAIAQGLDMLINPQRSGRFFDNSYVITDTDKTNVSMIGARELIKGLAIAGIAINSDGDSLRLANAITLGSTVIEEGVDQLTARADGFRGVSGAYRNLNSAFRVLVSCATLWTMWSLKGKPTPDDY 201

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|61456 vs. uniprot

BLAST of jgi.p|Trimin1|61456 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YXE3_9STRA	7.140e-133	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_36	contig	Contig_36:508864..511718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|61456\|CE61455_292
Hectar predicted targeting category	signal peptide
TranscriptId	61778
Track	FilteredModels1
ProteinId	61456

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|61456	gene_8380	Tribonema minus UTEX_B_3156	gene	Contig_36 508864..511718 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|61456	Trimin1\|61456\|CE61455_292	Tribonema minus UTEX_B_3156	polypeptide	Contig_36 508917..511261 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8380_1	exon_8380_1	Tribonema minus UTEX_B_3156	exon	Contig_36 508864..509105 +
exon_8380_2	exon_8380_2	Tribonema minus UTEX_B_3156	exon	Contig_36 509695..509786 +
exon_8380_3	exon_8380_3	Tribonema minus UTEX_B_3156	exon	Contig_36 510268..510457 +
exon_8380_4	exon_8380_4	Tribonema minus UTEX_B_3156	exon	Contig_36 511127..511718 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_8380	UTR5_8380	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_36 508864..508916 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8380	CDS_8380	Tribonema minus UTEX_B_3156	CDS	Contig_36 508917..509105 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_8380	UTR3_8380	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_36 511262..511718 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_36:508864..511718+
coding sequence from alignment at Contig_36:508864..511718+

spliced messenger RNA

>mRNA_8380 ID=mRNA_8380|Name=jgi.p|Trimin1|61456|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1116bp|location=Sequence derived from alignment at Contig_36:508864..511718+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTTAGCCCTGCAGAGTTCATAGCCGCTTACTTCACCAAAACCGCCAGCC
ACCATGAAGTGCATCGCAGCTATCGTTGCTGGCCTCCTGGCCACGGCCTC
CGCCTCAGCCACTCCCAAGTTTGGGAAGTGGATCAGCGTGCGGGGGGGAG
GCAATGTCCAAGACGATGCGCGGGACTTCGGCAACAGGGCGCAGCGGCGC
GGGGAGCAGGGCGTCAACAAGGTCAAGCGCAGGAGCGAGGAGCTCCGACC
AGAGCAGATCGTGCCCCTGACAGTGGGCGTGGTGGCGATTGCGCAGGGCC
TTGACATGCTCATCAACCCTCAGCGCAGCGGCAGGTTCTTTGACAACAGC
TACGTCATCACTGACACGGACAAGACCAACGTGTCCATGATCGGCGCACG
TGAGCTCATCAAGGGCCTGGCCATTGCAGGCATTGCCATCAACAGCGACG
GCGACTCTCTGCGCCTGGCAAATGCCATCACTCTGGGCAGCACTGTCATT
GAGGAGGGTGTGGACCAGCTTACGGCACGCGCCGACGGCTTCCGCGGCGT
CTCTGGCGCGTACCGCAACCTCAACAGCGCCTTCCGCGTCCTGGTCAGCT
GCGCAACGCTCTGGACCATGTGGTCCCTCAAGGGCAAGCCTACCCCGGAT
GACTACTAAATCATTGGTCAACAGTGCTCAGCTCGGGCAGTGACCACGCT
GCACAGGCGGTCTGCCGGCGCTGTGAAGTTTTGGTGCCAGCAGATCTAAG
GGTGGGCGAGGGGGTACTTGCCATTTTCTTTCGCAACTGAGTAGCTCACA
CGCCACGGCGAGAGGGGACAGGAGACAGGAGCATGCGCGTTCAGTTCAGC
ACACACAAGACTAAAATGCTGCCATGGCTACAAGGCTGGCATTACACCGT
GGGGGGGGTGTTAAGGGGCGATGGGGGTTGCTGAGCGGAGCAGCAGATGT
GGCACTTGGCTGTTTGAAGCAATTGCTGCTGAGGCTGGGGGAGTGAAGCG
CGCGCCTGCCCATTACATGTATTAGGTTGAGAGTTTGCAGCACTGCTGGC
TCTTGTAAGCAGCGGGTTGCTGTTACGTGTTACACACAGTCACATACATA
TACACTCTACACACAC

protein sequence of jgi.p|Trimin1|61456

>Trimin1|61456|CE61455_292 ID=Trimin1|61456|CE61455_292|Name=jgi.p|Trimin1|61456|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=202bp
MKCIAAIVAGLLATASASATPKFGKWISVRGGGNVQDDARDFGNRAQRRG
EQGVNKVKRRSEELRPEQIVPLTVGVVAIAQGLDMLINPQRSGRFFDNSY
VITDTDKTNVSMIGARELIKGLAIAGIAINSDGDSLRLANAITLGSTVIE
EGVDQLTARADGFRGVSGAYRNLNSAFRVLVSCATLWTMWSLKGKPTPDD
Y*

mRNA from alignment at Contig_36:508864..511718+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8380 ID=mRNA_8380|Name=jgi.p|Trimin1|61456|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2855bp|location=Sequence derived from alignment at Contig_36:508864..511718+ (Tribonema minus UTEX_B_3156 )
CTTTAGCCCTGCAGAGTTCATAGCCGCTTACTTCACCAAAACCGCCAGCC
ACCATGAAGTGCATCGCAGCTATCGTTGCTGGCCTCCTGGCCACGGCCTC
CGCCTCAGCCACTCCCAAGTTTGGGAAGTGGATCAGCGTGCGGGGGGGAG
GCAATGTCCAAGACGATGCGCGGGACTTCGGCAACAGGGCGCAGCGGCGC
GGGGAGCAGGGCGTCAACAAGGTCAAGCGCAGGAGCGAGGAGGTGTGTAT
GTTTGTCTGCTGAGCAGCTAGACCCACGCTGATCGTGTTGGTGTGAAAAA
GAATCTTTTGTTCCTGCCCAGATCTTGTTCAGACGCCACGGATGTGGCTT
ACTGGGGCCATGTGGCTTGACACTGAACGGGCCTTCAATACTCAGCGCAG
CCAGCTTACCCGAACACCTCTGCGCACGTAGCAACAGTGCCTATAATAGT
GCCCTCGATGTGGCGTCATGAGACAAGTGTTCTGCGACACGCACATCTTT
CACATCTGCACGCGCATACCACCTCAGCGCCACTCAACCAACAGTGGCTG
CCGCACAGGATGCTGTGGCTGCGCAGCTGCGATAATGACGCTTTCAAGAT
CAGACGCCAGCTGCGTTGTGCGAATGTTCTTTGATTCTCGTTTGTAGTCG
CCTCAAAGATGCGCTCAGCGCCATCGTCCGCCGTTGCACTGGTTTCACTC
GTGAGGCCTCCTTCCAGGTTGTCATGCCTGACAGGTTTATTCTGGTCAGA
CAATCATACACTTATGTGATCTCTTGAATACGCATCGCCCCCCCCCCTTG
CCCCCTTTTCTTGCCTATTCTTCACACGCAGCTCCGACCAGAGCAGATCG
TGCCCCTGACAGTGGGCGTGGTGGCGATTGCGCAGGGCCTTGACATGCTC
ATCAACCCTCAGCGCAGCGGCAGGTATGTGCTGTTCACTGAATGAGCTCT
TGGTCAAGTATTACAGAAGATACTCCCCCCAGCAATGCTTCTTTTGTTGA
GTATTGTGTGCGTTGTCACACTGAGGTGTGAATCAACTTGGTTTTTGAAA
TGTGACTTGCTGTTGACGCCTGTACGATAATGACGCCCAAAGCAATGTGG
AATCACATCGAATCACGCCACCGGCACACAGCATGCGTGTTTACAGTGAA
GTTTGTCCTACAATGCACCCTGGAGTGCTGTTGGATACTGCAATGCCACC
ATGTACAAAAGCACTCAGATTGTGTTTGGAAGCTCTTGGTAGTGCGTGCG
ATGCGCCTGACTTCATCGTGGGTTCTGCTTGTGCTGATTTCTCCTCGCAC
GTAGAATTCAATTGCGTACCATCTGCCCCCCCCTTTTGCTGTCGCTATCC
ACACTAACCATCCGCACATCTGTTGTTGTTGCGACCGGTTTTTTGTGCTG
GCAGGTTCTTTGACAACAGCTACGTCATCACTGACACGGACAAGACCAAC
GTGTCCATGATCGGCGCACGTGAGCTCATCAAGGGCCTGGCCATTGCAGG
CATTGCCATCAACAGCGACGGCGACTCTCTGCGCCTGGCAAATGCCATCA
CTCTGGGCAGCACTGTCATTGAGGAGGGTGTGGACCAGCTTACGGTAAGT
TGATCCTCTGATCTCAAGGATGTTCTACAGTTGTATGGCACATGGCATTG
TCGCCACTAGCTTGGGCTCCGAGCGGAACGCTAAATGCTTGCACACATTA
GTCATTTGGCTCCTGTGGATGTGGTGACACTGTTAGACGCGTGGCTGCCT
GCTGCAGCAGCGGCGACCACGGTCATTGGTGGAAGGCACTTGCGGCTGAC
CACGCCTTGTCACCTAGAGCTCTTCAACCTTCTGATTTTTCATGGGAAAG
GTTTACATTAATATACATATAGTACTGCTATATAGTGCCGGTAGTGGCCA
GTCTTTTATGTCTGTGCTACAGTCAGAAAAGTGTTGGTGCCAAGAACGGT
GCTGCATATCTTTTACCTCACAAAGCAACACGGCCATCAAATCAGTGTGG
ACCAGCTCGCTCTGGGCATGTTGGTGACACAGTAACTAATAATAGCATCC
CATTTGTGGCACCTGAAATGCACACATCAAGTGCGCCTGATGCCCTTCTT
TATGACTTTCTTCGTGACTCTGCCTCATGAGAAGCACTGTACAGTGTATC
TACTTACATTTTGAAGTTGTCCCATGGTCTCTACTGTATCTTCCCAACAA
CTCAGTCATCAATGTTTCCGCCCTTTTCGCCGCTTTGTCTGTTGCCTCTC
ACCGCCACTGCAGGCACGCGCCGACGGCTTCCGCGGCGTCTCTGGCGCGT
ACCGCAACCTCAACAGCGCCTTCCGCGTCCTGGTCAGCTGCGCAACGCTC
TGGACCATGTGGTCCCTCAAGGGCAAGCCTACCCCGGATGACTACTAAAT
CATTGGTCAACAGTGCTCAGCTCGGGCAGTGACCACGCTGCACAGGCGGT
CTGCCGGCGCTGTGAAGTTTTGGTGCCAGCAGATCTAAGGGTGGGCGAGG
GGGTACTTGCCATTTTCTTTCGCAACTGAGTAGCTCACACGCCACGGCGA
GAGGGGACAGGAGACAGGAGCATGCGCGTTCAGTTCAGCACACACAAGAC
TAAAATGCTGCCATGGCTACAAGGCTGGCATTACACCGTGGGGGGGGTGT
TAAGGGGCGATGGGGGTTGCTGAGCGGAGCAGCAGATGTGGCACTTGGCT
GTTTGAAGCAATTGCTGCTGAGGCTGGGGGAGTGAAGCGCGCGCCTGCCC
ATTACATGTATTAGGTTGAGAGTTTGCAGCACTGCTGGCTCTTGTAAGCA
GCGGGTTGCTGTTACGTGTTACACACAGTCACATACATATACACTCTACA
CACAC

Coding sequence (CDS) from alignment at Contig_36:508864..511718+

>mRNA_8380 ID=mRNA_8380|Name=jgi.p|Trimin1|61456|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=606bp|location=Sequence derived from alignment at Contig_36:508864..511718+ (Tribonema minus UTEX_B_3156 )
ATGAAGTGCATCGCAGCTATCGTTGCTGGCCTCCTGGCCACGGCCTCCGC
CTCAGCCACTCCCAAGTTTGGGAAGTGGATCAGCGTGCGGGGGGGAGGCA
ATGTCCAAGACGATGCGCGGGACTTCGGCAACAGGGCGCAGCGGCGCGGG
GAGCAGGGCGTCAACAAGGTCAAGCGCAGGAGCGAGGAGCTCCGACCAGA
GCAGATCGTGCCCCTGACAGTGGGCGTGGTGGCGATTGCGCAGGGCCTTG
ACATGCTCATCAACCCTCAGCGCAGCGGCAGGTTCTTTGACAACAGCTAC
GTCATCACTGACACGGACAAGACCAACGTGTCCATGATCGGCGCACGTGA
GCTCATCAAGGGCCTGGCCATTGCAGGCATTGCCATCAACAGCGACGGCG
ACTCTCTGCGCCTGGCAAATGCCATCACTCTGGGCAGCACTGTCATTGAG
GAGGGTGTGGACCAGCTTACGGCACGCGCCGACGGCTTCCGCGGCGTCTC
TGGCGCGTACCGCAACCTCAACAGCGCCTTCCGCGTCCTGGTCAGCTGCG
CAACGCTCTGGACCATGTGGTCCCTCAAGGGCAAGCCTACCCCGGATGAC
TACTAA