mRNA_833 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138091
Unique NamemRNA_833
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A835ZCJ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ5_9STRA)

HSP 1 Score: 286 bits (731), Expect = 8.830e-98
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
Query:    1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420
            PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN
Sbjct:    1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 140          
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A835Z862_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z862_9STRA)

HSP 1 Score: 225 bits (574), Expect = 7.960e-74
Identity = 101/140 (72.14%), Postives = 125/140 (89.29%), Query Frame = 1
Query:    1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420
            PV+QGG+G +PWGGA++FI+P+A WLWTQ NARFSAP  T+DFSTLITNSSQ D+QA+IH+LVDNDA ++LND KVGS SMGFS ++Y K+P+++PWGTSTLR R +N+G GPAGL+VAVVDAASG T+VK+DPSSWVFN
Sbjct:    1 PVSQGGFGVVPWGGASQFIDPTATWLWTQTNARFSAPAGTVDFSTLITNSSQQDKQALIHMLVDNDADVFLNDAKVGSGSMGFSVREYAKIPIALPWGTSTLRFRCVNSGTGPAGLLVAVVDAASGVTIVKSDPSSWVFN 140          
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A836CLV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV6_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.100e-43
Identity = 68/139 (48.92%), Postives = 100/139 (71.94%), Query Frame = 1
Query:    4 VNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420
            V+QGG+G +PWG A++F + +A W+WT  NARFSAP  + +F+  +   S     A++HILVDNDA IYLN  KVGSAS+GFS +DY+++P+++ WG + + +R  NTG GPAG+  +++D  S T L+KT+ S WV+N
Sbjct:   47 VDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYN 185          
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A836CJ77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ77_9STRA)

HSP 1 Score: 145 bits (366), Expect = 5.740e-42
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = 1
Query:    4 VNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420
            V+QGG+G +PWG A+ F + +A W+WT  NARFSA   T DF+      S     A +HILVDNDA ++LN  KVGSAS+GFS QDY ++P+++ WG + + +   NTG GPAG+  +++D AS T L+ T+ S WV+N
Sbjct:   15 VDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYN 153          
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A4V1IRM8_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IRM8_9FUNG)

HSP 1 Score: 107 bits (266), Expect = 1.790e-24
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    7 NQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVF 417
            N G +G  PWG A++F +P+A W+W+   A  +AP  T+ F+    NSS     AV+HIL DN+AV+ LN + VG+A+ G++   Y +LP+S+  G +++ I A N G GPAGL  A++   + + L+ TD ++W  
Sbjct:   46 NLGIFGVSPWGSASQFYDPTAYWIWSVPTAATAAPAGTVTFANQYYNSSNFTIPAVLHILADNNAVVVLNGVIVGTAAGGWTTPSYTQLPLSLTPGNNSISIVATNAG-GPAGLCAALISGVNKSVLLHTD-NTWTL 180          
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A4P9WNY3_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WNY3_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 1.200e-21
Identity = 47/136 (34.56%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    7 NQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWV 414
            N G +G  PWG A++F +P+A W+W  + A  +AP  ++ F     NSS +   A++HIL D+ A +++N   VG A  G+S   Y K+PV++  G + + I   N   GPAGL  +++ + + + L+ TD ++W+
Sbjct:  178 NLGLFGISPWGSASQFADPTASWIWYTSTAAATAPSGSVTFVNQYYNSSYNTMPAILHILADDSATVFVNGANVGVAVAGWSTTSYTKIPVNLTPGANLISIVDTNAS-GPAGLCASLISSVTNSVLLHTD-TTWL 311          
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: D8TKU9_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TKU9_VOLCA)

HSP 1 Score: 75.1 bits (183), Expect = 4.000e-14
Identity = 50/149 (33.56%), Postives = 71/149 (47.65%), Query Frame = 1
Query:    1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATID-------FSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPW--GTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420
            P  Q  YG    G A  F + SA W+W   N   S    T         F   IT S+    QA++HI+ D+DA IY+N   + S + G+++  Y   P++I    GT+ L I   N+G GPA L+ ++      T L +TD  SW  N
Sbjct:   33 PAAQSIYGTDNIGVAKPFFDLSAKWIWYHTNGAGSGSNRTSSGQSIAPLFIKTITVSTAGGTQALLHIIPDDDANIYVNGFFIQSVNAGWTSGTYTNRPITINLVQGTNVLAISIRNSGGGPAALLASLTSMDGRTVLARTD-KSWEVN 180          
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A8J4B5N1_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B5N1_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 2.670e-11
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   52 FIEPSAMWLWTQNNARFSAPP-ATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSI--PWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVF 417
            F +P AM +W   N   SA       F+T +T + Q   QA++H++VD+ A I++N   + +   G+ +  Y+  P+ I  P GTS L +R  NTG GPA +   ++ +  GT L +T+ S+W +
Sbjct:  388 FSDPQAMAIWVHENFHSSASTLVAATFTTTVTIAGQA-TQALLHVIVDDIADIFVNGAFITTVKWGWVSGQYSDRPIKITLPVGTSALSLRVKNTG-GPASIAAYLISSNGGTVLTRTN-SAWTY 509          
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A8J4EZI9_9CHLO (Uncharacterized protein (Fragment) n=10 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EZI9_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 2.740e-11
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   52 FIEPSAMWLWTQNNARFSAPP-ATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSI--PWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVF 417
            F +P AM +W   N   SA       F+T +T + Q   QA++H++VD+ A I++N   + +   G+ +  Y+  P+ I  P GTS L +R  NTG GPA +   ++ +  GT L +T+ S+W +
Sbjct:  561 FSDPQAMAIWVHENFHSSASTLVAATFTTTVTIAGQA-TQALLHVIVDDIADIFVNGAFITTVKWGWVSGQYSDRPIKITLPVGTSALSLRVKNTG-GPASIAAYLISSNGGTVLTRTN-SAWTY 682          
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A8J4FMS7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FMS7_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 2.510e-10
Identity = 44/143 (30.77%), Postives = 71/143 (49.65%), Query Frame = 1
Query:    1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPA-TIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSN-QDYNKLPV--SIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVF 417
            P     YG    G    F +  A W+W  +    SA  A    F+T   N+     +A+++I+VD+ A IYLN + +     G++N +DY   PV  ++  GT+TL IR  NT    A L+ ++V +   T L +T  ++W +
Sbjct:   32 PAGSSPYGTSNIGPGKLFTDTQAKWIWCNSAGGVSASIAIAATFTTTFLNTVAG-AEALLNIIVDDIAEIYLNGVYITKVQWGWNNAEDYTNRPVHLTLATGTNTLSIRVQNTWVTAAALLASLVGSNGSTVLARTS-NAWTY 172          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A835ZCJ5_9STRA8.830e-98100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z862_9STRA7.960e-7472.14Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CLV6_9STRA1.100e-4348.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJ77_9STRA5.740e-4248.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4V1IRM8_9FUNG1.790e-2439.42Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
A0A4P9WNY3_9FUNG1.200e-2134.56Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
D8TKU9_VOLCA4.000e-1433.56Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A8J4B5N1_9CHLO2.670e-1133.60Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
A0A8J4EZI9_9CHLO2.740e-1133.60Uncharacterized protein (Fragment) n=10 Tax=Volvox... [more]
A0A8J4FMS7_9CHLO2.510e-1030.77Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1548698..1549117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138091|gw1.2.139.1
Max annot lvl3067.XP_002949460.1|-
EggNOG OGs2EAG0@1|root,2SGPW@2759|Eukaryota
Evalue3.42e-08
Seed ortholog3067.XP_002949460.1
Hectar predicted targeting categoryother localisation
TranscriptId138413
TrackFilteredModels1
ProteinId138091
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138091gene_833Tribonema minus UTEX_B_3156 geneContig_2 1548698..1549117 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_833_1exon_833_1Tribonema minus UTEX_B_3156 exonContig_2 1548698..1549117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_833CDS_833Tribonema minus UTEX_B_3156 CDSContig_2 1548698..1549117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138091Trimin1|138091|gw1.2.139.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1548698..1549117 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_833 ID=mRNA_833|Name=jgi.p|Trimin1|138091|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_2:1548698..1549117+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGTGAACCAAGGTGGCTATGGGGCCATTCCTTGGGGGGGCGCGGCAAA
ATTCATCGAACCTTCAGCCATGTGGTTGTGGACTCAAAACAATGCGCGAT
TCTCGGCGCCACCTGCTACAATTGATTTCTCCACGCTCATCACAAACAGC
TCTCAAGACGATCAACAAGCAGTCATTCACATCCTCGTTGACAACGATGC
GGTCATTTACTTGAACGATATCAAGGTGGGATCTGCCTCCATGGGATTCA
GTAACCAAGACTACAACAAATTACCAGTGTCCATCCCATGGGGTACAAGC
ACGCTGCGCATCCGAGCCATGAATACCGGCCAAGGCCCTGCCGGTCTCAT
TGTCGCCGTAGTTGACGCTGCTTCAGGAACAACGCTAGTGAAAACCGATC
CCAGCTCGTGGGTGTTCAAT
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protein sequence of jgi.p|Trimin1|138091

>Trimin1|138091|gw1.2.139.1 ID=Trimin1|138091|gw1.2.139.1|Name=jgi.p|Trimin1|138091|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNS
SQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTS
TLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN
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mRNA from alignment at Contig_2:1548698..1549117+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_833 ID=mRNA_833|Name=jgi.p|Trimin1|138091|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_2:1548698..1549117+ (Tribonema minus UTEX_B_3156 )
CCGGTGAACCAAGGTGGCTATGGGGCCATTCCTTGGGGGGGCGCGGCAAA ATTCATCGAACCTTCAGCCATGTGGTTGTGGACTCAAAACAATGCGCGAT TCTCGGCGCCACCTGCTACAATTGATTTCTCCACGCTCATCACAAACAGC TCTCAAGACGATCAACAAGCAGTCATTCACATCCTCGTTGACAACGATGC GGTCATTTACTTGAACGATATCAAGGTGGGATCTGCCTCCATGGGATTCA GTAACCAAGACTACAACAAATTACCAGTGTCCATCCCATGGGGTACAAGC ACGCTGCGCATCCGAGCCATGAATACCGGCCAAGGCCCTGCCGGTCTCAT TGTCGCCGTAGTTGACGCTGCTTCAGGAACAACGCTAGTGAAAACCGATC CCAGCTCGTGGGTGTTCAAT
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Coding sequence (CDS) from alignment at Contig_2:1548698..1549117+

>mRNA_833 ID=mRNA_833|Name=jgi.p|Trimin1|138091|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_2:1548698..1549117+ (Tribonema minus UTEX_B_3156 )
CCGGTGAACCAAGGTGGCTATGGGGCCATTCCTTGGGGGGGCGCGGCAAA
ATTCATCGAACCTTCAGCCATGTGGTTGTGGACTCAAAACAATGCGCGAT
TCTCGGCGCCACCTGCTACAATTGATTTCTCCACGCTCATCACAAACAGC
TCTCAAGACGATCAACAAGCAGTCATTCACATCCTCGTTGACAACGATGC
GGTCATTTACTTGAACGATATCAAGGTGGGATCTGCCTCCATGGGATTCA
GTAACCAAGACTACAACAAATTACCAGTGTCCATCCCATGGGGTACAAGC
ACGCTGCGCATCCGAGCCATGAATACCGGCCAAGGCCCTGCCGGTCTCAT
TGTCGCCGTAGTTGACGCTGCTTCAGGAACAACGCTAGTGAAAACCGATC
CCAGCTCGTGGGTGTTCAAT
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