mRNA_832 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148864
Unique NamemRNA_832
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|148864 vs. uniprot
Match: A0A835Z2R5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R5_9STRA)

HSP 1 Score: 388 bits (996), Expect = 1.890e-136
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 
Query:    1 PVYHFDYKETESPVNLTRFIQTKAAVADDTVSAVFRPAADGKGGFIHYFLFFMKDAGTSVLGFNMGSHEYDIEQTIVQVSSKGKIVAIEFMPHNTKEHFWIRDTKDLATIVRDGHAQVYVSRGKHGCYPVAGTVTRYLGAVSDVCDKPVKKSYAAVVLADAVANVKYIGTGFEGIKSRLVVNTSVPTIRLSEV 579
            PVYHFDYKETESPVNLTRFIQTKAAVADDTVSAVFRPAADGKGGFIHYFLFFMKDAGTSVLGFNMGSHEYDIEQTIVQVSSKGKIVAIEFMPHNTKEHFWIRDTKDLATIVRDGHAQVYVSRGKHGCYPVAGTVTRYLGAVSDVCDKPVKKSYAAVVLADAVANVKYIGTGFEGIKSRLVVNTSVPTIRLSEV
Sbjct:    1 PVYHFDYKETESPVNLTRFIQTKAAVADDTVSAVFRPAADGKGGFIHYFLFFMKDAGTSVLGFNMGSHEYDIEQTIVQVSSKGKIVAIEFMPHNTKEHFWIRDTKDLATIVRDGHAQVYVSRGKHGCYPVAGTVTRYLGAVSDVCDKPVKKSYAAVVLADAVANVKYIGTGFEGIKSRLVVNTSVPTIRLSEV 193
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BLAST of jgi.p|Trimin1|148864 vs. uniprot
Match: A0A835ZEL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL0_9STRA)

HSP 1 Score: 300 bits (769), Expect = 1.610e-101
Identity = 141/193 (73.06%), Postives = 166/193 (86.01%), Query Frame = 1 
Query:    1 PVYHFDYKETESPVNLTRFIQTKAAVADDTVSAVFRPAADGKGGFIHYFLFFMKDAGTSVLGFNMGSHEYDIEQTIVQVSSKGKIVAIEFMPHNTKEHFWIRDTKDLATIVRDGHAQVYVSRGKHGCYPVAGTVTRYLGAVSDVCDKPVKKSYAAVVLADAVANVKYIGTGFEGIKSRLVVNTSVPTIRLSEV 579
            PVY+FD++E ESPVNL +F+ TKA V D+TVSAVF P+ADG GGFIHYFLFFM+DAG SV G N+GSH YDIEQTIVQV+ +GKIV ++FMPHN KEHFWI+DT DLA IVRDGH QVYVS GKHGCYPVAGTVTRYLG +SDVCD PV+++  AV+L+DA+  +KYIG GF+GI+SRL VN SVPTIRLS+V
Sbjct:   13 PVYYFDHREIESPVNLQKFVMTKAEVPDNTVSAVFTPSADGDGGFIHYFLFFMRDAGMSVFGVNLGSHRYDIEQTIVQVNGQGKIVGLQFMPHNVKEHFWIKDTYDLAMIVRDGHPQVYVSLGKHGCYPVAGTVTRYLGFLSDVCDNPVRQTLEAVILSDAMVKLKYIGAGFQGIRSRLTVNKSVPTIRLSDV 205
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148864 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z2R5_9STRA1.890e-136100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZEL0_9STRA1.610e-10173.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1545082..1545660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148864|gw1.2.230.1
Hectar predicted targeting categoryother localisation
TranscriptId149186
TrackFilteredModels1
ProteinId148864
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148864gene_832Tribonema minus UTEX_B_3156 geneContig_2 1545082..1545660 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_832_1exon_832_1Tribonema minus UTEX_B_3156 exonContig_2 1545082..1545660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_832CDS_832Tribonema minus UTEX_B_3156 CDSContig_2 1545082..1545660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148864Trimin1|148864|gw1.2.230.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1545082..1545660 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_832 ID=mRNA_832|Name=jgi.p|Trimin1|148864|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_2:1545082..1545660+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCTGTCTACCATTTCGATTACAAAGAGACAGAATCGCCAGTCAACCTCAC
CAGGTTCATCCAGACGAAAGCGGCGGTCGCGGATGACACTGTGAGCGCAG
TTTTCAGGCCCGCAGCAGACGGCAAAGGAGGGTTCATTCACTACTTTCTG
TTTTTCATGAAAGATGCAGGCACGAGCGTGTTGGGTTTTAACATGGGCTC
GCATGAGTATGATATTGAGCAGACTATCGTTCAAGTTTCCTCGAAAGGAA
AAATTGTAGCCATCGAATTCATGCCGCATAACACCAAAGAACACTTCTGG
ATCAGGGACACAAAAGACCTGGCCACAATCGTGAGGGACGGCCACGCGCA
GGTGTACGTGTCTCGTGGAAAGCACGGCTGTTATCCGGTGGCGGGCACCG
TCACCAGGTACCTGGGCGCCGTGAGCGATGTGTGCGACAAGCCCGTGAAA
AAATCATATGCGGCGGTAGTCCTAGCGGACGCTGTGGCGAATGTCAAGTA
CATTGGCACGGGGTTCGAAGGCATCAAATCGAGGCTTGTCGTCAACACAT
CTGTGCCGACCATCCGCCTGTCTGAAGTG
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protein sequence of jgi.p|Trimin1|148864

>Trimin1|148864|gw1.2.230.1 ID=Trimin1|148864|gw1.2.230.1|Name=jgi.p|Trimin1|148864|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=193bp
PVYHFDYKETESPVNLTRFIQTKAAVADDTVSAVFRPAADGKGGFIHYFL
FFMKDAGTSVLGFNMGSHEYDIEQTIVQVSSKGKIVAIEFMPHNTKEHFW
IRDTKDLATIVRDGHAQVYVSRGKHGCYPVAGTVTRYLGAVSDVCDKPVK
KSYAAVVLADAVANVKYIGTGFEGIKSRLVVNTSVPTIRLSEV
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mRNA from alignment at Contig_2:1545082..1545660+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_832 ID=mRNA_832|Name=jgi.p|Trimin1|148864|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_2:1545082..1545660+ (Tribonema minus UTEX_B_3156 )
CCTGTCTACCATTTCGATTACAAAGAGACAGAATCGCCAGTCAACCTCAC
CAGGTTCATCCAGACGAAAGCGGCGGTCGCGGATGACACTGTGAGCGCAG
TTTTCAGGCCCGCAGCAGACGGCAAAGGAGGGTTCATTCACTACTTTCTG
TTTTTCATGAAAGATGCAGGCACGAGCGTGTTGGGTTTTAACATGGGCTC
GCATGAGTATGATATTGAGCAGACTATCGTTCAAGTTTCCTCGAAAGGAA
AAATTGTAGCCATCGAATTCATGCCGCATAACACCAAAGAACACTTCTGG
ATCAGGGACACAAAAGACCTGGCCACAATCGTGAGGGACGGCCACGCGCA
GGTGTACGTGTCTCGTGGAAAGCACGGCTGTTATCCGGTGGCGGGCACCG
TCACCAGGTACCTGGGCGCCGTGAGCGATGTGTGCGACAAGCCCGTGAAA
AAATCATATGCGGCGGTAGTCCTAGCGGACGCTGTGGCGAATGTCAAGTA
CATTGGCACGGGGTTCGAAGGCATCAAATCGAGGCTTGTCGTCAACACAT
CTGTGCCGACCATCCGCCTGTCTGAAGTG
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Coding sequence (CDS) from alignment at Contig_2:1545082..1545660+

>mRNA_832 ID=mRNA_832|Name=jgi.p|Trimin1|148864|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=579bp|location=Sequence derived from alignment at Contig_2:1545082..1545660+ (Tribonema minus UTEX_B_3156 )
CCTGTCTACCATTTCGATTACAAAGAGACAGAATCGCCAGTCAACCTCAC
CAGGTTCATCCAGACGAAAGCGGCGGTCGCGGATGACACTGTGAGCGCAG
TTTTCAGGCCCGCAGCAGACGGCAAAGGAGGGTTCATTCACTACTTTCTG
TTTTTCATGAAAGATGCAGGCACGAGCGTGTTGGGTTTTAACATGGGCTC
GCATGAGTATGATATTGAGCAGACTATCGTTCAAGTTTCCTCGAAAGGAA
AAATTGTAGCCATCGAATTCATGCCGCATAACACCAAAGAACACTTCTGG
ATCAGGGACACAAAAGACCTGGCCACAATCGTGAGGGACGGCCACGCGCA
GGTGTACGTGTCTCGTGGAAAGCACGGCTGTTATCCGGTGGCGGGCACCG
TCACCAGGTACCTGGGCGCCGTGAGCGATGTGTGCGACAAGCCCGTGAAA
AAATCATATGCGGCGGTAGTCCTAGCGGACGCTGTGGCGAATGTCAAGTA
CATTGGCACGGGGTTCGAAGGCATCAAATCGAGGCTTGTCGTCAACACAT
CTGTGCCGACCATCCGCCTGTCTGAAGTG
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