mRNA_828 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134959
Unique NamemRNA_828
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134959 vs. uniprot
Match: A0A835Z4V3_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.140e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 RSEDGTTALHHAIARDDQEAAETLLANEASARAATNYGI 117
            RSEDGTTALHHAIARDDQEAAETLLANEASARAATNYGI
Sbjct:    1 RSEDGTTALHHAIARDDQEAAETLLANEASARAATNYGI 39
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BLAST of jgi.p|Trimin1|134959 vs. uniprot
Match: A0A835Z9I8_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.040e-12
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 RSEDGTTALHHAIARDDQEAAETLLANEASARAATNYGI 117
            RSEDGTTALHHAIARD+QEAAETLLAN+ASARA TNYGI
Sbjct:   15 RSEDGTTALHHAIARDNQEAAETLLANDASARATTNYGI 53
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134959 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z4V3_9STRA7.140e-15100.00Ankyrin repeat-containing domain protein (Fragment... [more]
A0A835Z9I8_9STRA2.040e-1292.31Ankyrin repeat-containing domain protein n=2 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1538463..1538897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134959|gw1.2.96.1
Hectar predicted targeting categoryother localisation
TranscriptId135281
TrackFilteredModels1
ProteinId134959
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134959gene_828Tribonema minus UTEX_B_3156 geneContig_2 1538463..1538897 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_828_1exon_828_1Tribonema minus UTEX_B_3156 exonContig_2 1538463..1538897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_828CDS_828Tribonema minus UTEX_B_3156 CDSContig_2 1538463..1538897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134959Trimin1|134959|gw1.2.96.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1538463..1538897 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_828 ID=mRNA_828|Name=jgi.p|Trimin1|134959|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_2:1538463..1538897+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCTCTGAAGACGGCACTACTGCGTTACATCATGCGATCGCGCGTGATGA
CCAAGAAGCGGCCGAAACACTGCTCGCGAATGAAGCATCCGCGCGTGCAG
CCACCAACTACGGCATAACACCGCTACACCTGGCAGCCATGCGTGGAAGT
GCGGAGCTAGTCACCCGACTCACTTTCCACGGCGGTTTCATCGATGCCAG
AGACTCATCTGGCGACACCCCTCTGCACTACGCTGTTCGCAACATGGATG
CCAACATGACCTTCAAGCTCGTCACCGGATCTGCCTCAGTCGATGTCCCC
AACCTGAAAGGCGAGACTCCGCTCCACCTGACTGCGCGTCACGGCTCTCC
CATCATGAACGCTGTCGTCATTGGCACTTCACGTCACATTGAGAAAACGG
ATCAGCTCGGTAACAATGCGCTGCACATTGCAGCA
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protein sequence of jgi.p|Trimin1|134959

>Trimin1|134959|gw1.2.96.1 ID=Trimin1|134959|gw1.2.96.1|Name=jgi.p|Trimin1|134959|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp
RSEDGTTALHHAIARDDQEAAETLLANEASARAATNYGITPLHLAAMRGS
AELVTRLTFHGGFIDARDSSGDTPLHYAVRNMDANMTFKLVTGSASVDVP
NLKGETPLHLTARHGSPIMNAVVIGTSRHIEKTDQLGNNALHIAA
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mRNA from alignment at Contig_2:1538463..1538897+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_828 ID=mRNA_828|Name=jgi.p|Trimin1|134959|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=435bp|location=Sequence derived from alignment at Contig_2:1538463..1538897+ (Tribonema minus UTEX_B_3156 )
CGCTCTGAAGACGGCACTACTGCGTTACATCATGCGATCGCGCGTGATGA
CCAAGAAGCGGCCGAAACACTGCTCGCGAATGAAGCATCCGCGCGTGCAG
CCACCAACTACGGCATAACACCGCTACACCTGGCAGCCATGCGTGGAAGT
GCGGAGCTAGTCACCCGACTCACTTTCCACGGCGGTTTCATCGATGCCAG
AGACTCATCTGGCGACACCCCTCTGCACTACGCTGTTCGCAACATGGATG
CCAACATGACCTTCAAGCTCGTCACCGGATCTGCCTCAGTCGATGTCCCC
AACCTGAAAGGCGAGACTCCGCTCCACCTGACTGCGCGTCACGGCTCTCC
CATCATGAACGCTGTCGTCATTGGCACTTCACGTCACATTGAGAAAACGG
ATCAGCTCGGTAACAATGCGCTGCACATTGCAGCA
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Coding sequence (CDS) from alignment at Contig_2:1538463..1538897+

>mRNA_828 ID=mRNA_828|Name=jgi.p|Trimin1|134959|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=435bp|location=Sequence derived from alignment at Contig_2:1538463..1538897+ (Tribonema minus UTEX_B_3156 )
CGCTCTGAAGACGGCACTACTGCGTTACATCATGCGATCGCGCGTGATGA
CCAAGAAGCGGCCGAAACACTGCTCGCGAATGAAGCATCCGCGCGTGCAG
CCACCAACTACGGCATAACACCGCTACACCTGGCAGCCATGCGTGGAAGT
GCGGAGCTAGTCACCCGACTCACTTTCCACGGCGGTTTCATCGATGCCAG
AGACTCATCTGGCGACACCCCTCTGCACTACGCTGTTCGCAACATGGATG
CCAACATGACCTTCAAGCTCGTCACCGGATCTGCCTCAGTCGATGTCCCC
AACCTGAAAGGCGAGACTCCGCTCCACCTGACTGCGCGTCACGGCTCTCC
CATCATGAACGCTGTCGTCATTGGCACTTCACGTCACATTGAGAAAACGG
ATCAGCTCGGTAACAATGCGCTGCACATTGCAGCA
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