mRNA_8273 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A835YW93_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW93_9STRA) HSP 1 Score: 160 bits (405), Expect = 6.730e-50 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 Query: 1 MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAALS 246 MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAALS Sbjct: 1 MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAALS 82
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A836CMG7_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG7_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.350e-28 Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 1 Query: 1 MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAA 240 +RQ+SREV QR++L+VLE CY PLTAAA++L VSNTMLKKLCRRYGIQRWPHRQIRSI+KE+QKH + RA A +A + A Sbjct: 89 IRQNSREVGQRITLSVLEACYGEPLTAAARRLGVSNTMLKKLCRRYGIQRWPHRQIRSIEKEVQKHMQARAQATSAVDIA 168
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 6.380e-18 Identity = 38/67 (56.72%), Postives = 55/67 (82.09%), Query Frame = 1 Query: 4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQE 204 RQ+S EV++R+ ++VLE Y++PL AA++L VS TMLKKLCR+YGI+RWPHRQ+ S++K + K +E Sbjct: 3 RQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEE 69
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 3.560e-15 Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQK 195 RQ+S +V+ R+ L VLE Y++PL AA++L VS TMLKKLCR YG++RWPHRQ+ S+DK K Sbjct: 465 RQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSK 528
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 3.600e-15 Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQK 195 RQ+S +V+ R+ L VLE Y++PL AA++L VS TMLKKLCR YG++RWPHRQ+ S+DK K Sbjct: 465 RQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSK 528
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI) HSP 1 Score: 74.7 bits (182), Expect = 5.690e-14 Identity = 34/65 (52.31%), Postives = 52/65 (80.00%), Query Frame = 1 Query: 1 MRQSSREVS-QRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQ 192 +RQS+ ++ + ++L +L+ YN+PL AK+L +S T+LKK+CR++GIQRWPHRQIRSI+K +Q Sbjct: 2 IRQSTTQIEPEEITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQ 66
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 4.070e-13 Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 1 Query: 25 SQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAA 240 + +++L +L+ YN+PL AK+L +S T+LKK+CR++GIQRWPHRQIRS++K Q+ +E A TA E A Sbjct: 8 ADQITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERAQCALTAEEHA 79
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: D0NC80_PHYIT (RWP-RK domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NC80_PHYIT) HSP 1 Score: 70.9 bits (172), Expect = 4.370e-13 Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1 Query: 4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEM 189 R S+ V L L C+N+P+ A A+K + T+LKK+CRRYGIQRWPHRQIRS+ K + Sbjct: 87 RGGSKRYGPVVQLEDLRECFNMPIAAVARKFGICATLLKKICRRYGIQRWPHRQIRSLQKSI 148
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 5.860e-13 Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1 Query: 25 SQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQ 192 + ++L +L+ YN+PL AK+L +S T+LKK+CR+YGIQRWPHRQIRSI+K Q Sbjct: 11 ADNITLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQ 66
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A2P4Y149_9STRA (RWP-RK domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y149_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.230e-12 Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEM 189 R SS+ V L L C+N+P+ A A+K + T+LKK+CRR+GIQRWPHRQIRS+ K + Sbjct: 91 RGSSKRYGPVVQLEDLRQCFNMPIAAVARKFGICATLLKKICRRHGIQRWPHRQIRSLQKSI 152 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8273 ID=mRNA_8273|Name=jgi.p|Trimin1|138845|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_34:352300..352545+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGCCAATCTTCGAGGGAGGTGTCGCAGCGCGTCAGCCTCGCAGTCCTback to top protein sequence of jgi.p|Trimin1|138845 >Trimin1|138845|gw1.34.18.1 ID=Trimin1|138845|gw1.34.18.1|Name=jgi.p|Trimin1|138845|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRback to top mRNA from alignment at Contig_34:352300..352545+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8273 ID=mRNA_8273|Name=jgi.p|Trimin1|138845|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_34:352300..352545+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_34:352300..352545+ >mRNA_8273 ID=mRNA_8273|Name=jgi.p|Trimin1|138845|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_34:352300..352545+ (Tribonema minus UTEX_B_3156 )back to top |