mRNA_8273 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138845
Unique NamemRNA_8273
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A835YW93_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW93_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.730e-50
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1
Query:    1 MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAALS 246
            MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAALS
Sbjct:    1 MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAALS 82          
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A836CMG7_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.350e-28
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAA 240
            +RQ+SREV QR++L+VLE CY  PLTAAA++L VSNTMLKKLCRRYGIQRWPHRQIRSI+KE+QKH + RA A +A + A
Sbjct:   89 IRQNSREVGQRITLSVLEACYGEPLTAAARRLGVSNTMLKKLCRRYGIQRWPHRQIRSIEKEVQKHMQARAQATSAVDIA 168          
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.380e-18
Identity = 38/67 (56.72%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQE 204
            RQ+S EV++R+ ++VLE  Y++PL  AA++L VS TMLKKLCR+YGI+RWPHRQ+ S++K + K +E
Sbjct:    3 RQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEE 69          
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.560e-15
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQK 195
            RQ+S +V+ R+ L VLE  Y++PL  AA++L VS TMLKKLCR YG++RWPHRQ+ S+DK   K
Sbjct:  465 RQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSK 528          
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.600e-15
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQK 195
            RQ+S +V+ R+ L VLE  Y++PL  AA++L VS TMLKKLCR YG++RWPHRQ+ S+DK   K
Sbjct:  465 RQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSK 528          
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI)

HSP 1 Score: 74.7 bits (182), Expect = 5.690e-14
Identity = 34/65 (52.31%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 MRQSSREVS-QRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQ 192
            +RQS+ ++  + ++L +L+  YN+PL   AK+L +S T+LKK+CR++GIQRWPHRQIRSI+K +Q
Sbjct:    2 IRQSTTQIEPEEITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQ 66          
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.070e-13
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   25 SQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEMRAHAPTATEAA 240
            + +++L +L+  YN+PL   AK+L +S T+LKK+CR++GIQRWPHRQIRS++K  Q+ +E    A TA E A
Sbjct:    8 ADQITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERAQCALTAEEHA 79          
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: D0NC80_PHYIT (RWP-RK domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NC80_PHYIT)

HSP 1 Score: 70.9 bits (172), Expect = 4.370e-13
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEM 189
            R  S+     V L  L  C+N+P+ A A+K  +  T+LKK+CRRYGIQRWPHRQIRS+ K +
Sbjct:   87 RGGSKRYGPVVQLEDLRECFNMPIAAVARKFGICATLLKKICRRYGIQRWPHRQIRSLQKSI 148          
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.860e-13
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   25 SQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQ 192
            +  ++L +L+  YN+PL   AK+L +S T+LKK+CR+YGIQRWPHRQIRSI+K  Q
Sbjct:   11 ADNITLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQ 66          
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Match: A0A2P4Y149_9STRA (RWP-RK domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y149_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.230e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    4 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEM 189
            R SS+     V L  L  C+N+P+ A A+K  +  T+LKK+CRR+GIQRWPHRQIRS+ K +
Sbjct:   91 RGSSKRYGPVVQLEDLRQCFNMPIAAVARKFGICATLLKKICRRHGIQRWPHRQIRSLQKSI 152          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138845 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YW93_9STRA6.730e-50100.00RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A836CMG7_9STRA1.350e-2871.25RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
A0A835Z7T4_9STRA6.380e-1856.72RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
D7FS12_ECTSI3.560e-1557.81Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5KE17_9PHAE3.600e-1557.81RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
H6WBB7_VAULI5.690e-1452.31Putative NIN-like transcription factor n=1 Tax=Vau... [more]
A0A835YTG3_9STRA4.070e-1350.00Putative NIN-like transcription factor n=1 Tax=Tri... [more]
D0NC80_PHYIT4.370e-1351.61RWP-RK domain-containing protein n=1 Tax=Phytophth... [more]
A0A835Z1M5_9STRA5.860e-1357.14Putative NIN-like transcription factor n=1 Tax=Tri... [more]
A0A2P4Y149_9STRA1.230e-1251.61RWP-RK domain-containing protein n=2 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:352300..352545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138845|gw1.34.18.1
DescriptionRWP-RK domain
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGs2D12Y@1|root,2SGI5@2759|Eukaryota,3Q972@4776|Peronosporales
Evalue2.05e-13
Seed ortholog4787.PITG_09531T0
Hectar predicted targeting categoryother localisation
TranscriptId139167
TrackFilteredModels1
ProteinId138845
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138845gene_8273Tribonema minus UTEX_B_3156 geneContig_34 352300..352545 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8273_1exon_8273_1Tribonema minus UTEX_B_3156 exonContig_34 352300..352545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8273CDS_8273Tribonema minus UTEX_B_3156 CDSContig_34 352300..352545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138845Trimin1|138845|gw1.34.18.1Tribonema minus UTEX_B_3156 polypeptideContig_34 352300..352545 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8273 ID=mRNA_8273|Name=jgi.p|Trimin1|138845|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_34:352300..352545+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAATCTTCGAGGGAGGTGTCGCAGCGCGTCAGCCTCGCAGTCCT
GGAGGGCTGTTACAACATACCCCTGACGGCTGCCGCCAAGAAACTCAAGG
TGTCCAACACGATGCTCAAGAAGCTCTGCAGGCGCTACGGCATACAGCGC
TGGCCCCACCGGCAGATACGCTCCATCGACAAGGAGATGCAGAAGCACCA
GGAGATGAGAGCTCACGCTCCCACCGCCACGGAGGCCGCGCTCTCC
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protein sequence of jgi.p|Trimin1|138845

>Trimin1|138845|gw1.34.18.1 ID=Trimin1|138845|gw1.34.18.1|Name=jgi.p|Trimin1|138845|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
MRQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQR
WPHRQIRSIDKEMQKHQEMRAHAPTATEAALS
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mRNA from alignment at Contig_34:352300..352545+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8273 ID=mRNA_8273|Name=jgi.p|Trimin1|138845|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_34:352300..352545+ (Tribonema minus UTEX_B_3156 )
ATGCGCCAATCTTCGAGGGAGGTGTCGCAGCGCGTCAGCCTCGCAGTCCT GGAGGGCTGTTACAACATACCCCTGACGGCTGCCGCCAAGAAACTCAAGG TGTCCAACACGATGCTCAAGAAGCTCTGCAGGCGCTACGGCATACAGCGC TGGCCCCACCGGCAGATACGCTCCATCGACAAGGAGATGCAGAAGCACCA GGAGATGAGAGCTCACGCTCCCACCGCCACGGAGGCCGCGCTCTCC
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Coding sequence (CDS) from alignment at Contig_34:352300..352545+

>mRNA_8273 ID=mRNA_8273|Name=jgi.p|Trimin1|138845|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_34:352300..352545+ (Tribonema minus UTEX_B_3156 )
ATGCGCCAATCTTCGAGGGAGGTGTCGCAGCGCGTCAGCCTCGCAGTCCT
GGAGGGCTGTTACAACATACCCCTGACGGCTGCCGCCAAGAAACTCAAGG
TGTCCAACACGATGCTCAAGAAGCTCTGCAGGCGCTACGGCATACAGCGC
TGGCCCCACCGGCAGATACGCTCCATCGACAAGGAGATGCAGAAGCACCA
GGAGATGAGAGCTCACGCTCCCACCGCCACGGAGGCCGCGCTCTCC
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