mRNA_8241 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154350
Unique NamemRNA_8241
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154350 vs. uniprot
Match: A0A835YWN3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWN3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.000e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 RSVDWLRREGCRQTKAFLGAARGGSLEALEWAHNQVPPCPWDNSVTEAAAQRXXXXXXXXXQEKGCPCSLSTAW 222
            RSVDWLRREGCRQTKAFLGAARGGSLEALEWAHNQVPPCPWDNSVTEAAAQRXXXXXXXXXQEKGCPCSLSTAW
Sbjct:    1 RSVDWLRREGCRQTKAFLGAARGGSLEALEWAHNQVPPCPWDNSVTEAAAQRXXXXXXXXXQEKGCPCSLSTAW 74
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154350 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YWN3_9STRA4.000e-43100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:84284..84505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154350|gw1.34.143.1
Hectar predicted targeting categoryother localisation
TranscriptId154672
TrackFilteredModels1
ProteinId154350
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154350gene_8241Tribonema minus UTEX_B_3156 geneContig_34 84284..84505 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8241_1exon_8241_1Tribonema minus UTEX_B_3156 exonContig_34 84284..84505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8241CDS_8241Tribonema minus UTEX_B_3156 CDSContig_34 84284..84505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154350Trimin1|154350|gw1.34.143.1Tribonema minus UTEX_B_3156 polypeptideContig_34 84284..84505 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8241 ID=mRNA_8241|Name=jgi.p|Trimin1|154350|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_34:84284..84505- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCAGCGTAGACTGGCTCCGTCGCGAAGGCTGCCGCCAGACAAAAGCGTT
TCTGGGGGCGGCAAGGGGGGGTAGCCTGGAGGCCCTGGAGTGGGCGCACA
ACCAGGTGCCGCCCTGCCCCTGGGACAACAGCGTGACAGAGGCGGCGGCG
CAGCGCGGGCACCTTGCGGCGCTGCGCTGGCTTCAAGAGAAGGGCTGCCC
ATGTTCGTTGAGCACTGCCTGG
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protein sequence of jgi.p|Trimin1|154350

>Trimin1|154350|gw1.34.143.1 ID=Trimin1|154350|gw1.34.143.1|Name=jgi.p|Trimin1|154350|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
RSVDWLRREGCRQTKAFLGAARGGSLEALEWAHNQVPPCPWDNSVTEAAA
QRGHLAALRWLQEKGCPCSLSTAW
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mRNA from alignment at Contig_34:84284..84505-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8241 ID=mRNA_8241|Name=jgi.p|Trimin1|154350|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_34:84284..84505- (Tribonema minus UTEX_B_3156 )
CGCAGCGTAGACTGGCTCCGTCGCGAAGGCTGCCGCCAGACAAAAGCGTT
TCTGGGGGCGGCAAGGGGGGGTAGCCTGGAGGCCCTGGAGTGGGCGCACA
ACCAGGTGCCGCCCTGCCCCTGGGACAACAGCGTGACAGAGGCGGCGGCG
CAGCGCGGGCACCTTGCGGCGCTGCGCTGGCTTCAAGAGAAGGGCTGCCC
ATGTTCGTTGAGCACTGCCTGG
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Coding sequence (CDS) from alignment at Contig_34:84284..84505-

>mRNA_8241 ID=mRNA_8241|Name=jgi.p|Trimin1|154350|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_34:84284..84505- (Tribonema minus UTEX_B_3156 )
CGCAGCGTAGACTGGCTCCGTCGCGAAGGCTGCCGCCAGACAAAAGCGTT
TCTGGGGGCGGCAAGGGGGGGTAGCCTGGAGGCCCTGGAGTGGGCGCACA
ACCAGGTGCCGCCCTGCCCCTGGGACAACAGCGTGACAGAGGCGGCGGCG
CAGCGCGGGCACCTTGCGGCGCTGCGCTGGCTTCAAGAGAAGGGCTGCCC
ATGTTCGTTGAGCACTGCCTGG
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