mRNA_8228 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167763
Unique NamemRNA_8228
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: A0A835YTL5_9STRA (TENA_THI-4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.040e-41
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MALEPRPGEPQDPHNISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQASY 195
            MALEPRPGEPQDPHNISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQASY
Sbjct:    1 MALEPRPGEPQDPHNISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQASY 65
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: A0A835YZC1_9STRA (Putative TenA family transcriptional activator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.310e-23
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:   25 EPQDPHNISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQA 189
            EPQ  +++SARLW+ACKE+ALNSLYHPFVLQLATGALPKEAFQ YITQDA +LQA
Sbjct:    8 EPQYSNSVSARLWRACKEEALNSLYHPFVLQLATGALPKEAFQIYITQDAIYLQA 62
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: A0A2K1JRY3_PHYPA (TENA_THI-4 domain-containing protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JRY3_PHYPA)

HSP 1 Score: 63.9 bits (154), Expect = 2.590e-10
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   46 ISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQA 189
            ++   W +CK +A  SLYHPFV+ LA G LPK+ FQ Y+ QDA+FL+A
Sbjct:   93 LAKSFWASCKREAYASLYHPFVVALAAGTLPKQTFQRYMAQDAYFLEA 140
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: A0A2P6THD7_CHLSO (Family transcriptional regulator n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6THD7_CHLSO)

HSP 1 Score: 61.2 bits (147), Expect = 1.110e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   22 GEPQDPHNISARLWQACKEDA--LNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQA 189
            G P     +S RLW   +  A  L +L+HPFV+ LA+G LP+EAFQ+YI +DAFFL++
Sbjct:    3 GTPSSSSGLSRRLWGDAQVQASVLRALHHPFVIALASGVLPREAFQSYIAEDAFFLKS 60
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: A0A7S0VK50_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VK50_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 4.340e-9
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   40 HNISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQ 186
            + +SARLWQ   ++A NS+Y PFV  +A G L K +FQAY+TQDA++L+
Sbjct:   16 NGLSARLWQEVIDEAFNSMYCPFVHAMAQGTLEKASFQAYVTQDAYYLE 64
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: A0A540VFZ6_9CHLR (TenA family protein n=1 Tax=Litorilinea aerophila TaxID=1204385 RepID=A0A540VFZ6_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 2.510e-8
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   46 ISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQA 189
            +S  LWQA +E A   L HPFV  +ATG LP +AFQ Y+ QDA+FLQA
Sbjct:    3 LSTDLWQASRELAQACLAHPFVQGIATGKLPIQAFQFYVGQDAYFLQA 50
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: A0A5D6XUG6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUG6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.860e-8
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   40 HNISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQ 186
            ++++ RLWQ  +  AL SLYHPFV  LA G+L +  FQA++ QDA++LQ
Sbjct:    6 NSMAERLWQQAQACALQSLYHPFVASLAAGSLARADFQAFLLQDAYYLQ 54
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: A0A5J4YAG9_9CHLO (TENA_THI-4 domain-containing protein (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAG9_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 1.200e-6
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   28 PQDPHNISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQA 189
            P +   I+A LW        ++L+ PFV  LA G+LPK+ FQ Y+ QDAFFL+A
Sbjct:   15 PPESTGIAAALWLDSAAHVASALHSPFVRSLADGSLPKQTFQHYVAQDAFFLKA 68
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: A0A367YRN3_9ACTN (Aminopyrimidine aminohydrolase n=2 Tax=Desertihabitans TaxID=2676837 RepID=A0A367YRN3_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 1.030e-5
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   46 ISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFLQA 189
            +S RLW A +      L HPF+L LA G+LP+EAF+ +I QD+ +L+A
Sbjct:    4 LSQRLWDAARPTYEQILDHPFLLGLADGSLPREAFRYFIVQDSHYLRA 51
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BLAST of jgi.p|Trimin1|167763 vs. uniprot
Match: T0QPD3_SAPDV (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QPD3_SAPDV)

HSP 1 Score: 50.1 bits (118), Expect = 2.020e-5
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   46 ISARLWQACKEDALNSLYHPFVLQLATGALPKEAFQAYITQDAFFL 183
            +S RLW          +YHPF+L +A+GALP  +FQ ++ QDAF+L
Sbjct:   14 LSRRLWADASPTRFRCVYHPFLLGVASGALPLTSFQEFLKQDAFYL 59
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167763 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835YTL5_9STRA3.040e-41100.00TENA_THI-4 domain-containing protein n=1 Tax=Tribo... [more]
A0A835YZC1_9STRA5.310e-2381.82Putative TenA family transcriptional activator n=1... [more]
A0A2K1JRY3_PHYPA2.590e-1054.17TENA_THI-4 domain-containing protein n=4 Tax=Physc... [more]
A0A2P6THD7_CHLSO1.110e-950.00Family transcriptional regulator n=1 Tax=Chlorella... [more]
A0A7S0VK50_9CHLO4.340e-953.06Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A540VFZ6_9CHLR2.510e-858.33TenA family protein n=1 Tax=Litorilinea aerophila ... [more]
A0A5D6XUG6_9STRA3.860e-851.02Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A5J4YAG9_9CHLO1.200e-646.30TENA_THI-4 domain-containing protein (Fragment) n=... [more]
A0A367YRN3_9ACTN1.030e-547.92Aminopyrimidine aminohydrolase n=2 Tax=Desertihabi... [more]
T0QPD3_SAPDV2.020e-545.65Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_53contigContig_53:781000..781197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167763|e_gw1.53.23.1
GOsGO:0003674,GO:0003824,GO:0003993,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042131,GO:0042364,GO:0042578,GO:0042723,GO:0042724,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
DescriptionTENA/THI-4/PQQC family
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0819@1|root,2QQU0@2759|Eukaryota,37JT0@33090|Viridiplantae,3GBWQ@35493|Streptophyta
Evalue4.25e-11
Seed ortholog3218.PP1S118_69V6.1
Hectar predicted targeting categoryother localisation
TranscriptId168085
TrackFilteredModels1
ProteinId167763
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167763gene_8228Tribonema minus UTEX_B_3156 geneContig_53 781000..781197 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8228_1exon_8228_1Tribonema minus UTEX_B_3156 exonContig_53 781000..781197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8228CDS_8228Tribonema minus UTEX_B_3156 CDSContig_53 781000..781197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167763Trimin1|167763|e_gw1.53.23.1Tribonema minus UTEX_B_3156 polypeptideContig_53 781000..781197 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8228 ID=mRNA_8228|Name=jgi.p|Trimin1|167763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_53:781000..781197- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCGAGCCCAGGCCGGGAGAGCCGCAGGATCCTCATAACATCTC
GGCACGGCTGTGGCAAGCTTGCAAGGAGGACGCTCTGAATTCGCTTTACC
ACCCATTCGTGCTGCAGTTGGCCACTGGCGCCCTACCGAAGGAGGCCTTT
CAAGCGTACATCACTCAGGACGCCTTCTTCTTGCAGGCAAGCTATTAA
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protein sequence of jgi.p|Trimin1|167763

>Trimin1|167763|e_gw1.53.23.1 ID=Trimin1|167763|e_gw1.53.23.1|Name=jgi.p|Trimin1|167763|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp
MALEPRPGEPQDPHNISARLWQACKEDALNSLYHPFVLQLATGALPKEAF
QAYITQDAFFLQASY*
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mRNA from alignment at Contig_53:781000..781197-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8228 ID=mRNA_8228|Name=jgi.p|Trimin1|167763|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_53:781000..781197- (Tribonema minus UTEX_B_3156 )
ATGGCGCTCGAGCCCAGGCCGGGAGAGCCGCAGGATCCTCATAACATCTC
GGCACGGCTGTGGCAAGCTTGCAAGGAGGACGCTCTGAATTCGCTTTACC
ACCCATTCGTGCTGCAGTTGGCCACTGGCGCCCTACCGAAGGAGGCCTTT
CAAGCGTACATCACTCAGGACGCCTTCTTCTTGCAGGCAAGCTATTAA
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Coding sequence (CDS) from alignment at Contig_53:781000..781197-

>mRNA_8228 ID=mRNA_8228|Name=jgi.p|Trimin1|167763|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=198bp|location=Sequence derived from alignment at Contig_53:781000..781197- (Tribonema minus UTEX_B_3156 )
ATGGCGCTCGAGCCCAGGCCGGGAGAGCCGCAGGATCCTCATAACATCTC
GGCACGGCTGTGGCAAGCTTGCAAGGAGGACGCTCTGAATTCGCTTTACC
ACCCATTCGTGCTGCAGTTGGCCACTGGCGCCCTACCGAAGGAGGCCTTT
CAAGCGTACATCACTCAGGACGCCTTCTTCTTGCAGGCAAGCTATTAA
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