mRNA_814 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157114
Unique NamemRNA_814
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: A0A835Z442_9STRA (Glycosyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z442_9STRA)

HSP 1 Score: 585 bits (1507), Expect = 1.820e-211
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 1
Query:    1 MIYLIDVVSYNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHAADAYMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKANYASLSTPIYFHQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRITRTATTDDLPEPIKKFHEKIMFAQRY 837
            MIYLIDVVSYNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHAADAYMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKANYASLSTPIYFHQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRITRTATTDDLPEPIKKFHEKIMFAQRY
Sbjct:    1 MIYLIDVVSYNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHAADAYMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKANYASLSTPIYFHQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRITRTATTDDLPEPIKKFHEKIMFAQRY 279          
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: A0A835Z6R3_9STRA (Glycosyl transferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R3_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.230e-77
Identity = 124/279 (44.44%), Postives = 177/279 (63.44%), Query Frame = 1
Query:   10 LIDVVSYNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHA-ADAYMRGG-LGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKAN-YASLSTPIYFHQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRITRTATTDDLPEPIKKFHEKIMFAQRY 837
            LIDV  +NGEP+LE RLEYL + VDE V+VESK T SG  K  ++     D L + P +T L++D  PP+  + W ++ + + ++M  G +  WFRE +QRD+   YI  KYA + YIV+CSDVDEIP  +++ +LK +    L TPIY H    MYN+ W+TDE W +AFVIN  G     S+ ++R A P RV P+ GWH S+ L   DL RKIQ+F+H E+NK ++T  AH ++CL +G D+  R  ++    A T  +PE   KF+EK++F Q++
Sbjct:    3 LIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFY----CDDLVQHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGNGQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGELK----AYTGQVPELFIKFNEKMLFLQKF 273          
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: A0A835ZIL3_9STRA (Glycosyltransferase family 17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIL3_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.930e-57
Identity = 97/235 (41.28%), Postives = 137/235 (58.30%), Query Frame = 1
Query:  145 GEKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHAADA---YMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKAN-YASLSTPIYFHQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRITRTATTDDLPEPIKKFHEKIMFAQRY 837
            G   S+ L   P +T L+++  P +    W  +  A A   YM G +  W+RE +QRD    YI+ KYA ++YIV+CSDVDEIP  + + +LK + Y  L  PI+ H +  MYN+ W+TDE W +AFVIN        S+ ++R A P RV P+ GWH S  L+   L RK+QSF+H EFNK ++T  AHV KCL+ G D+  R            ++PE  + FH+K++F QRY
Sbjct:  131 GCLLSEALPVHPKLTVLKLEDAPAVADHKWTLQRRASASSSYMEGSMDHWYREKHQRDHPHSYIKNKYASREYIVVCSDVDEIPRKEFLISLKQHCYGQLRDPIHLHMKMLMYNMKWQTDEQWMRAFVINKVSFCAATSIDELRRADPGRVAPNGGWHCSSFLSTAQLTRKLQSFSHQEFNKPEYTDAAHVRKCLSEGKDVLKRGG---DLRKYAGEVPEVFRSFHKKMLFLQRY 362          
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: A0A6C0DQX5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DQX5_9ZZZZ)

HSP 1 Score: 147 bits (372), Expect = 1.720e-39
Identity = 92/281 (32.74%), Postives = 139/281 (49.47%), Query Frame = 1
Query:    1 MIYLIDVVSYNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHAADAYMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKAN-YASLSTPI-YFHQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIRTAPPKRVFPSA-GWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRITRTATTDDLPEPIKKFHEKIM-FAQ 831
            M+  ID + +NGEP+++ RL Y+ + VD   I ES+ TH G  K   F E      + + +     I    P                +G   +W  EN QR++A+P I    AGK+YIV   D DEIP + VV   K   Y + S+ + Y  Q+ + YN NW   + W++AF +N+  L     +   R   P +      GWHLS+ ++K D++RKI SFAHTE+N  K  + A++E C+  G D+F R  +          LPE +K   ++   FA+
Sbjct:    1 MVRWIDSILFNGEPIIQLRLSYMYKTVDTFYICESRYTHQGKRKDVLFTESLKAWFEPYMDKIVFVIQEEVP----------------KGS--SWDIENSQRNYAVPKILSDNAGKEYIVSVCDCDEIPDISVVKEYKERLYETTSSGVCYMIQKLFYYNFNWYVVD-WNRAFFMNNVLLEKTREVQIFRNRIPTQFTEFVCGWHLSYFMSKEDILRKIVSFAHTEYNLPKHKNIAYIESCIEKGYDVFQRHEI-----CRFQHLPEFVKSLPKEFQTFAE 257          
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: A0A3G5AHS7_9VIRU (Uncharacterized protein n=1 Tax=Sylvanvirus sp. TaxID=2487774 RepID=A0A3G5AHS7_9VIRU)

HSP 1 Score: 144 bits (364), Expect = 2.600e-35
Identity = 97/274 (35.40%), Postives = 138/274 (50.36%), Query Frame = 1
Query:    4 IYLIDVVSYNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPN-ITYLQIDSFPPL------IPDVWMKK---HAADAYMRGGLGAWFRENYQRDFALPYIQKKYAG----KQYIVMCSDVDEIPSLDVVNTLKAN---YASL-STP---IYFHQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIR------TAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSR 744
            I L D V YNGEP++E RL+ L   VD+  I E++ T SG  KP  + EK   + +++ N I +L I+ FP +      + +   K    H  D      + +WFRENYQRD+    +Q+K         ++ +  DVDEIP   ++  LK     Y  L  TP   +Y    FY YN NW+    W   F       T + S SD R           R   ++GWHLS+ + K DL+RKI SFAH EF++D+F S + ++ CL  G D+F R
Sbjct:  440 IALFDCVPYNGEPIVEERLKQLYPYVDKFYITEARYTFSGIRKPELYVEKNRHVFERYMNKIEFLVIEQFPDIETSERNMIETRAKMNQIHCVD------IESWFRENYQRDYVQQILQQKQQEGLICDPFVCVVCDVDEIPRAAILQDLKKPEYYYDRLCKTPRQTLYLQMDFYYYNWNWKKKSPWMHPFCTT----TIQESFSDKRWNAHFHARSLDRTILNSGWHLSYFMPKEDLVRKITSFAHREFDQDQFKSSSWLDVCLCAGKDLFGR 703          
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: UPI001BC3C213 (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI001BC3C213)

HSP 1 Score: 112 bits (279), Expect = 1.380e-25
Identity = 82/243 (33.74%), Postives = 119/243 (48.97%), Query Frame = 1
Query:   28 YNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPNITYLQID-SFPPLIPDVWMKKHAADAYMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKANYASLSTPIYFHQRFYMYNLNWETDEFWSKAFVINDTGLTPE---HSLSDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSR 744
            +N   +LE RL+ L + VD  VI ES  TH+G PKP YF E  S        I YL +  S   L  +  + K+   +       AW  EN QR+ AL  I  + A    +++ SD+DEIP   V+     + ++LS  + FH  +Y  N     DE W    ++       E    +L D R   P+     AGWH S+      + +KIQSFAHTEFNK+++  + ++ K +  G DIF+R
Sbjct:   10 FNELDLLEFRLKLLHDVVDHFVIAESNLTHAGKPKPYYFEEAKSRFAPWQQKIIYLPVQQSTEGLDFNTTITKYTPTS------AAWQLENGQRN-ALQQINSQLADDDKVLL-SDLDEIPDPGVLKRTTISTSALSLSMIFH--YYFLNCQNVGDEHWWNGSIVCSGKQFKELGPQTLRDNRNNYPR--VKKAGWHFSYLGGVEKIKQKIQSFAHTEFNKEEYLQDENIIKAMLEGKDIFNR 240          
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: A0A1W6BBV6_9PROT (Uncharacterized protein n=1 Tax=Candidatus Pelagibacter sp. RS39 TaxID=1977864 RepID=A0A1W6BBV6_9PROT)

HSP 1 Score: 109 bits (272), Expect = 8.340e-25
Identity = 79/261 (30.27%), Postives = 126/261 (48.28%), Query Frame = 1
Query:   10 LIDVVSYNGEP-VLEARLEYLSERVDELVIVESKCTHSGTPKPCY-FG-EKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHAADAYMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTL---KANYASLSTPIYFHQRFYMYNL---NWETDEFWSKAFVINDTGLT-------PEHSLSDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSR 744
            +ID   YN E  +LE RL  L + +D+ VI+E++  HSG  K  Y F  E F    +K   I YL+++ FP                   G   W RENY R++ L  ++  +  + YI++ SD+DEIP+L+ +N +   K  Y +    + ++ +F + N    NW   +     ++ N   L        P + L  I+      +    GWH SF +   D+ +KI+SFAH+EFNK KFT    + + + +  D+F R
Sbjct:    3 IIDCFLYNNEDLILELRLNLLDKHIDKFVIIEARYNHSGVIKENYNFNIENFKKFKEK---IIYLKLEDFP------------------NGFNNWERENYHRNYILKALENTHQ-EDYIII-SDIDEIPNLEEINQVLIDKRKYTAFKQKMIYY-KFNLLNASEPNWYGSKMCKLKYLKNPQWLRNQKVKNYPFYRLDKIKW----NIVDKGGWHFSFVMPLEDVSKKIKSFAHSEFNKKKFTDINQISEKINSHKDLFDR 235          
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: A0A6C0BAU9_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BAU9_9ZZZZ)

HSP 1 Score: 108 bits (269), Expect = 2.630e-24
Identity = 71/258 (27.52%), Postives = 124/258 (48.06%), Query Frame = 1
Query:   13 IDVVSYNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHAADAYMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKANYASLSTPIYFHQ-RFYMYNLNWETD-EFWSKAFVINDTGLTPEHSLSDIRTAP-------PKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRI 759
            ID   +NG+ + + RLEYL + +D   IVES+ T+SG  K   + +  +D    +     + ++  P +                  L AW  E YQR+  +  + + + G  +++   D DE+    ++   +     L T +YF Q  FY YN     D + W+  F+I+   L    SL++IR          P    PS GWH S+  +  D+ RKIQSF+HT+ ++++ T+   + + +  G DIF R+++++
Sbjct:    3 IDTFMFNGDWITKLRLEYLYDYIDFFYIVESRYTYSGKRKEQLYVDIHNDWFLPYSQKVKIIVNERPAV------------------LNAWEEEAYQRNLIVGSVLRDFPGSDFLLAVCDCDEVYDFSMLPPKEELGHVLKTYVYFPQMNFYYYNFTHIIDGDLWTNPFIIHSDMLKSYPSLTEIRVNKCMGGKLLPTIRMPS-GWHFSYFSSLSDMRRKIQSFSHTDLDREENTNLLTIARRVQEGKDIFGRENLKL 241          
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: A0A402CWI2_9BACT (Uncharacterized protein n=2 Tax=Capsulimonas corticalis TaxID=2219043 RepID=A0A402CWI2_9BACT)

HSP 1 Score: 109 bits (273), Expect = 1.060e-23
Identity = 80/269 (29.74%), Postives = 117/269 (43.49%), Query Frame = 1
Query:   28 YNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHAADAYMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKANYASL------STPIYFHQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRITRTATTDDLPEPIKKFHEK 816
            +N   +LE RL  L   VD  ++VE+  T SG PKP YF E   +    FP I ++ ID FP  +                  G W RENY R      ++     ++ +VM SD+DEIP  + V    A YA         T   F Q    Y +N+  +E W    +     +     L + + A    V  + GWH S+      +  K+   AHTEF++  F  EAH+E+C+A G+D+F R     T     +  P  I +  E+
Sbjct:    9 FNELDILEIRLAELMPVVDRFLLVEATETFSGKPKPLYF-EVNKERFAGFP-IEHVIIDKFPDDLQ-----------------GPWARENYPRHLMRERLELSGLSQEDVVMLSDLDEIPRAEAV----ARYARTLQREVPGTVYVFEQHLSYYFVNYRVNEPWYGTRMARWQDIADMQRLRESQGA----VIRNGGWHFSYAGGVQAIREKVAGSAHTEFDRPAFLDEAHIERCMAAGTDLFGRGGEGFTCVPLDETFPAAIARNRER 250          
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Match: A0A812ZXC4_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZXC4_SYMMI)

HSP 1 Score: 103 bits (258), Expect = 4.180e-23
Identity = 67/232 (28.88%), Postives = 114/232 (49.14%), Query Frame = 1
Query:  184 ITYLQIDSFPPLIPD-------VWMKKHAADAYMRGGLGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKAN--YASLSTPIYFHQRFYM--YNLNWETDEFWSKAFVINDTGLTPEHSL--SDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRITRT--ATTDDL-PEPIKKFHEKIMFAQ 831
            IT+L +D  PP   D        WMK  + DA+       W  +++QR F   +I +     + + +C+D DEIPS ++V + +    Y ++ T    H   YM  YN +W     W+ AF I       +  L  S + T   +      GWHLS+ L++ D++RK++SF H E++  +F ++ HV +CL  G D++ R  V++        D L P+  +++ + +M  Q
Sbjct:    4 ITFLVVDEVPPRPADFIDTQLHAWMKSVSYDAF-------WV-DHFQRAFVRDFIDR---NSKTVYICTDADEIPSRELVASFRDEWMYDAVFTRKTIHIAMYMFYYNFHWAMPSMWTHAFAIGTERYLAQRDLVQSRVITDMEEVELVRGGWHLSYFLSREDIVRKVESFPHREYDLAEFKTDEHVTECLQMGKDMYKRDDVQLIPVDLEVNDHLWPQGWREYQQYVMRLQ 224          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157114 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z442_9STRA1.820e-211100.00Glycosyl transferase n=1 Tax=Tribonema minus TaxID... [more]
A0A835Z6R3_9STRA2.230e-7744.44Glycosyl transferase n=2 Tax=Tribonema minus TaxID... [more]
A0A835ZIL3_9STRA1.930e-5741.28Glycosyltransferase family 17-domain-containing pr... [more]
A0A6C0DQX5_9ZZZZ1.720e-3932.74Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A3G5AHS7_9VIRU2.600e-3535.40Uncharacterized protein n=1 Tax=Sylvanvirus sp. Ta... [more]
UPI001BC3C2131.380e-2533.74Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
A0A1W6BBV6_9PROT8.340e-2530.27Uncharacterized protein n=1 Tax=Candidatus Pelagib... [more]
A0A6C0BAU9_9ZZZZ2.630e-2427.52Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A402CWI2_9BACT1.060e-2329.74Uncharacterized protein n=2 Tax=Capsulimonas corti... [more]
A0A812ZXC4_SYMMI4.180e-2328.88Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1508194..1509033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157114|e_gw1.2.43.1
CAZyGT17
BRITEko00000,ko00001,ko00002,ko01000,ko01003
KEGG ReactionR05986
KEGG ModuleM00075
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG koko:K00737
EC2.4.1.144
Descriptionfamily 17
COG categoryI
Max annot lvl4751|Fungi
EggNOG OGs28HI1@1|root,2QPVW@2759|Eukaryota,39WVW@33154|Opisthokonta,3NUGT@4751|Fungi,3QNRS@4890|Ascomycota,214KW@147550|Sordariomycetes,1F0H7@1028384|Glomerellales
Evalue1.35e-22
Seed ortholog474922.ELA26509
Hectar predicted targeting categoryother localisation
TranscriptId157436
TrackFilteredModels1
ProteinId157114
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157114gene_814Tribonema minus UTEX_B_3156 geneContig_2 1508194..1509033 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_814_1exon_814_1Tribonema minus UTEX_B_3156 exonContig_2 1508194..1509033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_814CDS_814Tribonema minus UTEX_B_3156 CDSContig_2 1508194..1509033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157114Trimin1|157114|e_gw1.2.43.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1508194..1509033 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_814 ID=mRNA_814|Name=jgi.p|Trimin1|157114|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=840bp|location=Sequence derived from alignment at Contig_2:1508194..1509033+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTATTTAATTGATGTCGTTTCTTACAATGGCGAACCAGTCCTGGA
AGCACGCCTAGAGTACCTCTCTGAGCGTGTAGACGAGCTCGTCATCGTTG
AATCCAAGTGCACGCACTCGGGCACCCCCAAGCCTTGCTACTTTGGCGAG
AAGTTCTCTGATATCCTTCAGAAGTTTCCCAACATCACATACCTGCAAAT
AGACTCCTTTCCACCCTTAATACCAGACGTATGGATGAAAAAGCACGCCG
CAGATGCATACATGCGAGGCGGCCTAGGCGCGTGGTTCAGAGAAAACTAT
CAAAGGGATTTTGCTCTGCCGTACATTCAAAAGAAGTATGCTGGAAAACA
GTATATCGTAATGTGCTCTGACGTCGACGAGATACCCAGCCTTGATGTTG
TCAACACACTGAAGGCCAACTACGCATCGCTGTCCACGCCCATCTACTTT
CACCAACGCTTCTACATGTACAACCTCAACTGGGAAACCGACGAATTCTG
GTCAAAGGCCTTTGTCATCAACGACACTGGGCTCACCCCTGAGCACTCAC
TCAGCGATATACGCACCGCCCCGCCCAAGCGCGTCTTTCCCTCGGCCGGG
TGGCACTTATCCTTCTGTCTAGCCAAGCACGACCTCATTCGCAAGATACA
GAGCTTTGCCCACACAGAGTTCAACAAGGACAAATTCACCAGCGAAGCAC
ATGTCGAAAAGTGTTTGGCCAATGGAAGCGATATTTTCAGCCGTCAGCAT
GTTCGCATAACCCGCACTGCCACCACAGACGACCTACCGGAGCCCATCAA
AAAATTCCATGAAAAAATAATGTTTGCACAGCGCTATTAA
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protein sequence of jgi.p|Trimin1|157114

>Trimin1|157114|e_gw1.2.43.1 ID=Trimin1|157114|e_gw1.2.43.1|Name=jgi.p|Trimin1|157114|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=280bp
MIYLIDVVSYNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGE
KFSDILQKFPNITYLQIDSFPPLIPDVWMKKHAADAYMRGGLGAWFRENY
QRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKANYASLSTPIYF
HQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIRTAPPKRVFPSAG
WHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQH
VRITRTATTDDLPEPIKKFHEKIMFAQRY*
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mRNA from alignment at Contig_2:1508194..1509033+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_814 ID=mRNA_814|Name=jgi.p|Trimin1|157114|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=840bp|location=Sequence derived from alignment at Contig_2:1508194..1509033+ (Tribonema minus UTEX_B_3156 )
ATGATTTATTTAATTGATGTCGTTTCTTACAATGGCGAACCAGTCCTGGA AGCACGCCTAGAGTACCTCTCTGAGCGTGTAGACGAGCTCGTCATCGTTG AATCCAAGTGCACGCACTCGGGCACCCCCAAGCCTTGCTACTTTGGCGAG AAGTTCTCTGATATCCTTCAGAAGTTTCCCAACATCACATACCTGCAAAT AGACTCCTTTCCACCCTTAATACCAGACGTATGGATGAAAAAGCACGCCG CAGATGCATACATGCGAGGCGGCCTAGGCGCGTGGTTCAGAGAAAACTAT CAAAGGGATTTTGCTCTGCCGTACATTCAAAAGAAGTATGCTGGAAAACA GTATATCGTAATGTGCTCTGACGTCGACGAGATACCCAGCCTTGATGTTG TCAACACACTGAAGGCCAACTACGCATCGCTGTCCACGCCCATCTACTTT CACCAACGCTTCTACATGTACAACCTCAACTGGGAAACCGACGAATTCTG GTCAAAGGCCTTTGTCATCAACGACACTGGGCTCACCCCTGAGCACTCAC TCAGCGATATACGCACCGCCCCGCCCAAGCGCGTCTTTCCCTCGGCCGGG TGGCACTTATCCTTCTGTCTAGCCAAGCACGACCTCATTCGCAAGATACA GAGCTTTGCCCACACAGAGTTCAACAAGGACAAATTCACCAGCGAAGCAC ATGTCGAAAAGTGTTTGGCCAATGGAAGCGATATTTTCAGCCGTCAGCAT GTTCGCATAACCCGCACTGCCACCACAGACGACCTACCGGAGCCCATCAA AAAATTCCATGAAAAAATAATGTTTGCACAGCGCTATTAA
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Coding sequence (CDS) from alignment at Contig_2:1508194..1509033+

>mRNA_814 ID=mRNA_814|Name=jgi.p|Trimin1|157114|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=840bp|location=Sequence derived from alignment at Contig_2:1508194..1509033+ (Tribonema minus UTEX_B_3156 )
ATGATTTATTTAATTGATGTCGTTTCTTACAATGGCGAACCAGTCCTGGA
AGCACGCCTAGAGTACCTCTCTGAGCGTGTAGACGAGCTCGTCATCGTTG
AATCCAAGTGCACGCACTCGGGCACCCCCAAGCCTTGCTACTTTGGCGAG
AAGTTCTCTGATATCCTTCAGAAGTTTCCCAACATCACATACCTGCAAAT
AGACTCCTTTCCACCCTTAATACCAGACGTATGGATGAAAAAGCACGCCG
CAGATGCATACATGCGAGGCGGCCTAGGCGCGTGGTTCAGAGAAAACTAT
CAAAGGGATTTTGCTCTGCCGTACATTCAAAAGAAGTATGCTGGAAAACA
GTATATCGTAATGTGCTCTGACGTCGACGAGATACCCAGCCTTGATGTTG
TCAACACACTGAAGGCCAACTACGCATCGCTGTCCACGCCCATCTACTTT
CACCAACGCTTCTACATGTACAACCTCAACTGGGAAACCGACGAATTCTG
GTCAAAGGCCTTTGTCATCAACGACACTGGGCTCACCCCTGAGCACTCAC
TCAGCGATATACGCACCGCCCCGCCCAAGCGCGTCTTTCCCTCGGCCGGG
TGGCACTTATCCTTCTGTCTAGCCAAGCACGACCTCATTCGCAAGATACA
GAGCTTTGCCCACACAGAGTTCAACAAGGACAAATTCACCAGCGAAGCAC
ATGTCGAAAAGTGTTTGGCCAATGGAAGCGATATTTTCAGCCGTCAGCAT
GTTCGCATAACCCGCACTGCCACCACAGACGACCTACCGGAGCCCATCAA
AAAATTCCATGAAAAAATAATGTTTGCACAGCGCTATTAA
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