mRNA_8104 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150876
Unique NamemRNA_8104
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: A0A835YT91_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT91_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.490e-37
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 QRRGLRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            QRRGLRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM
Sbjct:    1 QRRGLRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 65
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BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: A0A7S2A3B6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A3B6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.830e-14
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 QRRGLRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            ++R L+AWF+ +D DGSGEI   EL  PLL++G A++  +V  L+R  D+DGSG IGF EFL  M
Sbjct:   30 EKRSLKAWFNRIDADGSGEIDVEELADPLLSSGLAQTMDDVRELVRGVDEDGSGAIGFSEFLNIM 94
[Close]
BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: A0A7S1XZK3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZK3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.970e-14
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 QRRGLRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            Q+R LR WFD LD DGSGEISA EL  PL++ G A++  +V  +I   D DGSGEIGF EFL A+
Sbjct:  358 QKRKLRKWFDSLDDDGSGEISAEELRDPLISFGLAKTEEDVIRIITDTDTDGSGEIGFAEFLQAL 422
[Close]
BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: A0A2D4C1N3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1N3_PYTIN)

HSP 1 Score: 69.3 bits (168), Expect = 3.020e-12
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   13 LRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            LR WF+ LD DGSG +   EL  PL++ G AR+  EV  LI + DKDGSGE+ F+EFLT M
Sbjct:   83 LRRWFESLDTDGSGAVGVNELEDPLVSVGLARTRDEVQHLIDEVDKDGSGEVTFDEFLTLM 143
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BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: K3X9X3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9X3_GLOUD)

HSP 1 Score: 63.5 bits (153), Expect = 9.760e-11
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 LRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            +R WF+ LD DGSGE+   EL  PL++ G AR+  +V  LI   DK+G GE+ F+EFL  M
Sbjct:    4 MRRWFESLDADGSGEVGLNELEDPLVSVGLARNREDVQKLIDGVDKEGKGEVTFDEFLNLM 64
[Close]
BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: A0A2R5GHW7_9STRA (Glycerol uptake protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHW7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.100e-9
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   13 LRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            LR WF+ LD D SGEIS  EL  PLL  G  RS  +V  L+ + D DGSG IGF+EF+  +
Sbjct:    3 LRQWFNVLDEDKSGEISTNELVDPLLTVGLCRSRQQVERLVSKIDVDGSGAIGFDEFVNIV 63
[Close]
BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: A0A1V9Y5G2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y5G2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.010e-9
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   13 LRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            LR WFD  D D SG ISA EL  P+L  G A +  E+  L++ AD DG G+IGF++F+  M
Sbjct:  296 LRMWFDSYDLDKSGGISAEELVWPMLVLGFANTLQEIEVLLKDADSDGDGQIGFDDFVELM 356
[Close]
BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: A0A7S1WA34_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1WA34_NEODS)

HSP 1 Score: 53.9 bits (128), Expect = 8.090e-7
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   13 LRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            LR  F+  D D SG I   ELG    A G   S  ++AAL++QAD DGSGE+ FEEFL  M
Sbjct:  195 LREVFNHFDADNSGSIDIEELGHVFEAMGQKLSEEDLAALMKQADDDGSGEMEFEEFLMLM 255
[Close]
BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: F0Y0A8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0A8_AURAN)

HSP 1 Score: 49.3 bits (116), Expect = 2.040e-6
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   25 FDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            F  LD DGSG IS  EL   L A G  RS  E+  L+ + D DG+G +GF EF+  +
Sbjct:    1 FAALDEDGSGGISIAELEQSLTAIGLVRSHEELVNLVAEYDSDGTGNLGFREFVEVL 57
[Close]
BLAST of jgi.p|Trimin1|150876 vs. uniprot
Match: Q8S325_ACEAT (Centrin (Fragment) n=1 Tax=Acetabularia acetabulum TaxID=35845 RepID=Q8S325_ACEAT)

HSP 1 Score: 50.4 bits (119), Expect = 2.560e-6
Identity = 28/57 (49.12%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   25 FDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADKDGSGEIGFEEFLTAM 195
            FD  D DGSG I A+EL   + A G      E+  +I   DKDGSG I FEEFL+ M
Sbjct:    2 FDLFDTDGSGSIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLSMM 58
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150876 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YT91_9STRA5.490e-37100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2A3B6_9STRA3.830e-1452.31Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1XZK3_9STRA3.970e-1458.46Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2D4C1N3_PYTIN3.020e-1255.74Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3X9X3_GLOUD9.760e-1149.18Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2R5GHW7_9STRA1.100e-952.46Glycerol uptake protein 1 n=1 Tax=Hondaea fermenta... [more]
A0A1V9Y5G2_9STRA3.010e-949.18Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S1WA34_NEODS8.090e-750.82Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
F0Y0A8_AURAN2.040e-645.61Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
Q8S325_ACEAT2.560e-649.12Centrin (Fragment) n=1 Tax=Acetabularia acetabulum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_40contigContig_40:790388..791594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150876|gw1.40.128.1
BRITEko00000,ko00001,ko03036,ko03400
KEGG Pathwayko03420,map03420
KEGG koko:K10840,ko:K16465
Descriptioncalcium ion binding
COG categoryDTZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5126@1|root,KOG0028@2759|Eukaryota
Evalue3.31e-14
Seed ortholog2880.D7FZV9
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-22_003900.1
TranscriptId151198
TrackFilteredModels1
ProteinId150876
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150876gene_8104Tribonema minus UTEX_B_3156 geneContig_40 790388..791594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150876Trimin1|150876|gw1.40.128.1Tribonema minus UTEX_B_3156 polypeptideContig_40 790388..791594 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8104_2exon_8104_2Tribonema minus UTEX_B_3156 exonContig_40 790388..790432 -
exon_8104_1exon_8104_1Tribonema minus UTEX_B_3156 exonContig_40 791445..791594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8104CDS_8104Tribonema minus UTEX_B_3156 CDSContig_40 791445..791594 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8104 ID=mRNA_8104|Name=jgi.p|Trimin1|150876|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_40:790388..791594- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCGCCGCGGCCTGCGCGCGTGGTTCGACGGACTCGACCGCGACGGCTC
TGGGGAGATCTCCGCGCGCGAGCTTGGGCCGCCGCTGCTGGCGACGGGCG
CCGCGCGCAGCACCGCGGAGGTGGCGGCGCTCATCCGGCAGGCGGACAAG
GATGGATCGGGCGAGATAGGATTCGAAGAGTTTCTGACGGCAATG
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protein sequence of jgi.p|Trimin1|150876

>Trimin1|150876|gw1.40.128.1 ID=Trimin1|150876|gw1.40.128.1|Name=jgi.p|Trimin1|150876|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
QRRGLRAWFDGLDRDGSGEISARELGPPLLATGAARSTAEVAALIRQADK
DGSGEIGFEEFLTAM
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mRNA from alignment at Contig_40:790388..791594-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8104 ID=mRNA_8104|Name=jgi.p|Trimin1|150876|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1207bp|location=Sequence derived from alignment at Contig_40:790388..791594- (Tribonema minus UTEX_B_3156 )
CAGCGCCGCGGCCTGCGCGCGTGGTTCGACGGACTCGACCGCGACGGCTC
TGGGGAGATCTCCGCGCGCGAGCTTGGGCCGCCGCTGCTGGCGACGGGCG
CCGCGCGCAGCACCGCGGAGGTGGCGGCGCTCATCCGGCAGGCGGACAAG
GTGCGTGGCTCAGAGTGTTGAGTCGTGCTGCTCGGATGTTTTGCGTGCAG
CAGCACGCGGGCGCGAGGAGAATCTGAAAGGCTGCTGGCGACGGGCGCCG
CGCGCAGCACCGCGGAGGTGGCGGCGCTGATCCGGCAGGCGGATCAAGTG
CGCAGCGCTCAGCGTTCGACGTTGAGCCGTGCTGCGTGGAAGGGAAAGCT
TGCTTTGCCGACCACAGCTGCAGACGAGAACAATGAGCGTCTTGTCGCTG
CTGGCGACGGGCGCAGCGCGCAGCACCGCGGAGGTGGCGGCGCTCATCCG
GCAAGCGGACAAGGTGCGCGCGCGTGCAATCGTCTGGACGTTCAGGTTAT
GGCAGCAGAGTATAAGAATGGGGTGTTTCGATTTCGACAGGAAGCGTGTC
AGCGCTTCTGCGCAAACGTGCGGATCTTGTGGCAACGGGACAAAGCGCGC
AGCACTGCGGAGGTGGCAGCGCTCATCCGTCAGGTGGGCAAGGTGCGCAG
CGCTCAGCGTTCGTTGAGCCGTGCTGCATGGAAGTTGAAGCTGCCCCGTA
ATGGCAGCGGGCACAATGAGCATCTCATTGCTGCTGGCAATGGGGGGTAC
CGCTCGTTCTGCGGGCCGCTGGGGTGCTCCTGGGGGGTGCAATGGCCAGG
TAAAGCATCGTGAAGCACACGTGGTTGTCAAAACAGATGCGTGTATGTGA
GGCCCATCACTTTCATGCAATGCTGAACAGCCTTTTTTGCCATGGCAGCG
AGCTGGCGGCAGCGGGATCAGCAGCAGCGGCAGCAGCGGCGGCAGCGGAG
CTGCCAGCGGCGGCAGCGGCACCGCTGCCGCTACGGCCACTGCTGCCGCC
ACTGCGGCAGCAGTTGCAGCAGCAACAGCTGCGCACACTGAGTGCACCGG
TTGAGTGCGCGCCAGTCCTAACCCTACCCCTAACCCTAGTCTAGTGCTGA
CAGCGTCAGACATTCCGTATCACTTCTGAGCAATGCCGACTCACACTTTG
TGCTCGAGCCAGGATGGATCGGGCGAGATAGGATTCGAAGAGTTTCTGAC
GGCAATG
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Coding sequence (CDS) from alignment at Contig_40:790388..791594-

>mRNA_8104 ID=mRNA_8104|Name=jgi.p|Trimin1|150876|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_40:790388..791594- (Tribonema minus UTEX_B_3156 )
CAGCGCCGCGGCCTGCGCGCGTGGTTCGACGGACTCGACCGCGACGGCTC
TGGGGAGATCTCCGCGCGCGAGCTTGGGCCGCCGCTGCTGGCGACGGGCG
CCGCGCGCAGCACCGCGGAGGTGGCGGCGCTCATCCGGCAGGCGGACAAG
GATGGATCGGGCGAGATAGGATTCGAAGAGTTTCTGACGGCAATG
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