mRNA_81 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|157257
Unique Name	mRNA_81
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|157257 vs. uniprot
Match: A0A835YWT1_9STRA (EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT1_9STRA)

HSP 1 Score: 266 bits (681), Expect = 7.420e-84
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1

Query:    1 MGGAGAASASNKSAKAVLKRVKTCAFLPCCNPAVRKWCPAHSTLKKCIVNGCGKRPHHNYVGAGSRYCTSHKLLGMVDDYGSRECEEPGCATKPCFGRKRGRPTHCRKHKHLDMVDVSNPQ 363
            MGGAGAASASNKSAKAVLKRVKTCAFLPCCNPAVRKWCPAHSTLKKCIVNGCGKRPHHNYVGAGSRYCTSHKLLGMVDDYGSRECEEPGCATKPCFGRKRGRPTHCRKHKHLDMVDVSNPQ
Sbjct:    1 MGGAGAASASNKSAKAVLKRVKTCAFLPCCNPAVRKWCPAHSTLKKCIVNGCGKRPHHNYVGAGSRYCTSHKLLGMVDDYGSRECEEPGCATKPCFGRKRGRPTHCRKHKHLDMVDVSNPQ 121

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|157257 vs. uniprot

BLAST of jgi.p|Trimin1|157257 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YWT1_9STRA	7.420e-84	100.00	EsV-1-7 (Fragment) n=1 Tax=Tribonema minus TaxID=3...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_3	contig	Contig_3:449415..450452 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|157257\|e_gw1.3.433.1
Hectar predicted targeting category	other localisation
TranscriptId	157579
Track	FilteredModels1
ProteinId	157257

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|157257	gene_81	Tribonema minus UTEX_B_3156	gene	Contig_3 449415..450452 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_81_1	exon_81_1	Tribonema minus UTEX_B_3156	exon	Contig_3 449415..450452 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_81	CDS_81	Tribonema minus UTEX_B_3156	CDS	Contig_3 449415..450452 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|157257	Trimin1\|157257\|e_gw1.3.433.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_3 449415..450452 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_3:449415..450452+
coding sequence from alignment at Contig_3:449415..450452+

spliced messenger RNA

>mRNA_81 ID=mRNA_81|Name=jgi.p|Trimin1|157257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1038bp|location=Sequence derived from alignment at Contig_3:449415..450452+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGGCGCGGGCGCAGCGTCAGCATCGAACAAGTCAGCGAAGGCGGT
GTTGAAGCGAGTGAAAACTTGCGCTTTCCTACCATGCTGCAACCCTGCCG
TCCGCAAGTGGTGCCCAGCGCACAGTACGTTAAAGAAATGCATCGTAAAT
GGGTGCGGAAAGCGCCCTCATCACAACTACGTGGGCGCGGGATCCCGATA
CTGCACATCCCACAAGCTCCTAGGCATGGTTGATGACTACGGTTCACGGG
AATGTGAGGAGCCCGGCTGCGCCACGAAACCATGCTTCGGACGGAAAAGA
GGTCGACCGACGCATTGTAGAAAGCACAAGCATCTGGATATGGTTGACGT
CAGCAACCCACAATGCGCGACAACAGGCTGCAGTATTCAACCATCTTACG
GGGAGGTCGGAGGTCGTGCAACATGCTGCAGCACACATAAACAACCCGAC
ATGGTGAACGTCAAGGATCCGCAATGTGCGGCAACGGGCTGCAGCAAACA
ACCATGCTACGGGGAGGTCGGCGGCCGTGCAACATGCTGTGGTCCTCACA
AACAACCCGGCATGGTCAACGTCGTGAGCCCACAATGCTCAGCACCGGGA
TGTACGACCATACCTTGCTTCGGACAGGTCGGATGTCCTGCAACATGCTG
CAGCACACATAAACAACTCGGCATGGTCAACGTTAAGGATCCGAAATGCG
CAGCGCTGGGATGCATGACGTATCCATGCTTTGGAGACGTCGGTGGTCCC
GCAACACATTGTGCCAGACACAGGCGACCCGGCGCCGTTAATGTTAGGGA
CCGGCAGTGCGAGTCGGATGGATGTACCACGCGCCCGTCCTTCGGAATTG
AAGGGGAGCGCGCCACTCACTGCGGCGCGCACCGACTGCCCGGCGCAGTT
GATGTCGTGAATCGGAAGTGCGCGGCAGAGGAGTGCACCACGCAAGCGTG
CTTCGGCGAAAGAGGTCACCGTGCGACACACTGCTTCACGCACAAAAGAC
CCGGGATGATCGATGTCGTCACCACATACTGCGAGCAC

protein sequence of jgi.p|Trimin1|157257

>Trimin1|157257|e_gw1.3.433.1 ID=Trimin1|157257|e_gw1.3.433.1|Name=jgi.p|Trimin1|157257|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=346bp
MGGAGAASASNKSAKAVLKRVKTCAFLPCCNPAVRKWCPAHSTLKKCIVN
GCGKRPHHNYVGAGSRYCTSHKLLGMVDDYGSRECEEPGCATKPCFGRKR
GRPTHCRKHKHLDMVDVSNPQCATTGCSIQPSYGEVGGRATCCSTHKQPD
MVNVKDPQCAATGCSKQPCYGEVGGRATCCGPHKQPGMVNVVSPQCSAPG
CTTIPCFGQVGCPATCCSTHKQLGMVNVKDPKCAALGCMTYPCFGDVGGP
ATHCARHRRPGAVNVRDRQCESDGCTTRPSFGIEGERATHCGAHRLPGAV
DVVNRKCAAEECTTQACFGERGHRATHCFTHKRPGMIDVVTTYCEH

mRNA from alignment at Contig_3:449415..450452+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_81 ID=mRNA_81|Name=jgi.p|Trimin1|157257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1038bp|location=Sequence derived from alignment at Contig_3:449415..450452+ (Tribonema minus UTEX_B_3156 )
ATGGGGGGCGCGGGCGCAGCGTCAGCATCGAACAAGTCAGCGAAGGCGGT
GTTGAAGCGAGTGAAAACTTGCGCTTTCCTACCATGCTGCAACCCTGCCG
TCCGCAAGTGGTGCCCAGCGCACAGTACGTTAAAGAAATGCATCGTAAAT
GGGTGCGGAAAGCGCCCTCATCACAACTACGTGGGCGCGGGATCCCGATA
CTGCACATCCCACAAGCTCCTAGGCATGGTTGATGACTACGGTTCACGGG
AATGTGAGGAGCCCGGCTGCGCCACGAAACCATGCTTCGGACGGAAAAGA
GGTCGACCGACGCATTGTAGAAAGCACAAGCATCTGGATATGGTTGACGT
CAGCAACCCACAATGCGCGACAACAGGCTGCAGTATTCAACCATCTTACG
GGGAGGTCGGAGGTCGTGCAACATGCTGCAGCACACATAAACAACCCGAC
ATGGTGAACGTCAAGGATCCGCAATGTGCGGCAACGGGCTGCAGCAAACA
ACCATGCTACGGGGAGGTCGGCGGCCGTGCAACATGCTGTGGTCCTCACA
AACAACCCGGCATGGTCAACGTCGTGAGCCCACAATGCTCAGCACCGGGA
TGTACGACCATACCTTGCTTCGGACAGGTCGGATGTCCTGCAACATGCTG
CAGCACACATAAACAACTCGGCATGGTCAACGTTAAGGATCCGAAATGCG
CAGCGCTGGGATGCATGACGTATCCATGCTTTGGAGACGTCGGTGGTCCC
GCAACACATTGTGCCAGACACAGGCGACCCGGCGCCGTTAATGTTAGGGA
CCGGCAGTGCGAGTCGGATGGATGTACCACGCGCCCGTCCTTCGGAATTG
AAGGGGAGCGCGCCACTCACTGCGGCGCGCACCGACTGCCCGGCGCAGTT
GATGTCGTGAATCGGAAGTGCGCGGCAGAGGAGTGCACCACGCAAGCGTG
CTTCGGCGAAAGAGGTCACCGTGCGACACACTGCTTCACGCACAAAAGAC
CCGGGATGATCGATGTCGTCACCACATACTGCGAGCAC

Coding sequence (CDS) from alignment at Contig_3:449415..450452+

>mRNA_81 ID=mRNA_81|Name=jgi.p|Trimin1|157257|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1038bp|location=Sequence derived from alignment at Contig_3:449415..450452+ (Tribonema minus UTEX_B_3156 )
ATGGGGGGCGCGGGCGCAGCGTCAGCATCGAACAAGTCAGCGAAGGCGGT
GTTGAAGCGAGTGAAAACTTGCGCTTTCCTACCATGCTGCAACCCTGCCG
TCCGCAAGTGGTGCCCAGCGCACAGTACGTTAAAGAAATGCATCGTAAAT
GGGTGCGGAAAGCGCCCTCATCACAACTACGTGGGCGCGGGATCCCGATA
CTGCACATCCCACAAGCTCCTAGGCATGGTTGATGACTACGGTTCACGGG
AATGTGAGGAGCCCGGCTGCGCCACGAAACCATGCTTCGGACGGAAAAGA
GGTCGACCGACGCATTGTAGAAAGCACAAGCATCTGGATATGGTTGACGT
CAGCAACCCACAATGCGCGACAACAGGCTGCAGTATTCAACCATCTTACG
GGGAGGTCGGAGGTCGTGCAACATGCTGCAGCACACATAAACAACCCGAC
ATGGTGAACGTCAAGGATCCGCAATGTGCGGCAACGGGCTGCAGCAAACA
ACCATGCTACGGGGAGGTCGGCGGCCGTGCAACATGCTGTGGTCCTCACA
AACAACCCGGCATGGTCAACGTCGTGAGCCCACAATGCTCAGCACCGGGA
TGTACGACCATACCTTGCTTCGGACAGGTCGGATGTCCTGCAACATGCTG
CAGCACACATAAACAACTCGGCATGGTCAACGTTAAGGATCCGAAATGCG
CAGCGCTGGGATGCATGACGTATCCATGCTTTGGAGACGTCGGTGGTCCC
GCAACACATTGTGCCAGACACAGGCGACCCGGCGCCGTTAATGTTAGGGA
CCGGCAGTGCGAGTCGGATGGATGTACCACGCGCCCGTCCTTCGGAATTG
AAGGGGAGCGCGCCACTCACTGCGGCGCGCACCGACTGCCCGGCGCAGTT
GATGTCGTGAATCGGAAGTGCGCGGCAGAGGAGTGCACCACGCAAGCGTG
CTTCGGCGAAAGAGGTCACCGTGCGACACACTGCTTCACGCACAAAAGAC
CCGGGATGATCGATGTCGTCACCACATACTGCGAGCAC