mRNA_8054 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147774
Unique NamemRNA_8054
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A836CD00_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD00_9STRA)

HSP 1 Score: 311 bits (796), Expect = 3.330e-107
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
Query:    1 LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS 465
            LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS
Sbjct:    1 LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS 155          
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A836CEN4_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN4_9STRA)

HSP 1 Score: 123 bits (309), Expect = 9.470e-30
Identity = 72/187 (38.50%), Postives = 100/187 (53.48%), Query Frame = 1
Query:    1 LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMA-------FQDPLGTAKASAHDGGGEHALAKAADR-------------------------SLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS 465
            L+K  R+SPS ATGLLGL+E+ +L  YC  YAGI +    E+Q A+A +MA                              AADR                         +L+W+A+  G +MQGV + E +EP+L RA+E ++EC+DDA+PQVLRAYL ++ +H TLEDY RF  YFG +  +A+S
Sbjct:  149 LTKYPRMSPSAATGLLGLREHGFLNAYCMAYAGIHFVDEPEMQSAIAQLMADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAADRPELXXXXXXXXXXXXXXXXXXXXXXALMWIAIVIGAIMQGVENTESVEPYLARAKEALRECHDDATPQVLRAYLLMSKLHVTLEDYPRFYHYFGISCGIAES 335          
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A835YN27_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN27_9STRA)

HSP 1 Score: 112 bits (280), Expect = 7.480e-26
Identity = 64/153 (41.83%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   16 RLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMA----FQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQ 462
            RLSPS ATGLLGL+EN +L+ +   Y G+A     ++QR+V DVM                             A  + LW A+A G  +QG  D   +  +L R+R+ IK+CYDDA+P+VLRA L LA+V+A+ EDY RF RY G A S+A+
Sbjct:  135 RLSPSTATGLLGLRENDHLRAFLRAYTGVARVRESDVQRSVMDVMGRGXXXXXXXXXXXXXXXXXXXXXXXXXNAGTAFLWAAIAYGAQLQGGADTSAVSAYLARSRDAIKDCYDDATPEVLRATLLLADVYASAEDYTRFYRYVGLAASVAR 287          
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A836C7K5_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7K5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.870e-12
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   19 LSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIK--ECYDDASPQVLRAYLFLANVHATLEDYGRF 426
            LSPS ATG+LGLQEN YL MY S +AG+      ++QR+V ++M  +   G++         + A A AA+R  LW  +A G ++ G  +      ++ R    ++       A+ + LRA++  AN  A LED  R+
Sbjct:  241 LSPSIATGMLGLQENKYLFMYMSTFAGVPCVAESDLQRSVVELMGPRAATGSSXXXXXXXXPDRAAADAANRCTLWTGIANGALLLGAPE-HVYGRYMERGMRELRGGAAAAAATAETLRAHILAANTFAMLEDTARY 377          
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A835YKP4_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.780e-10
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  208 HALAKAADRSLLWVAVAC----------------------GMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGR 423
            +A+A +A++  LW A+A                       G ++QG T L+ +E +L RAR+ IKE YDDA+P+VLRAYL LA  HAT  DY R
Sbjct:  195 NAVAVSANKCALWAAIASXXXXXXXXXXXXXXXXXXXXAYGALLQGRTALDVVEGYLARARDAIKEVYDDAAPEVLRAYLLLAIFHATQADYPR 288          
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A836CL14_9STRA (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL14_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.250e-7
Identity = 50/176 (28.41%), Postives = 78/176 (44.32%), Query Frame = 1
Query:    7 KLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRA----VADVMAFQDPLGTAKASAHD--------------------GGGEHAL--AKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISL 456
            K ARL+PS ATG LGL E++YL      +  +  F  + I R     + D      P    +  A D                    G  E AL  A  A +++LW  VA G ++ G + ++ +  +   A   +KEC+D        AY+ LA +H  L+D+ ++ RY  F+ +L
Sbjct:  168 KRARLTPSSATGFLGLAEHSYLTAVLDDFLYVFPFVDQGIMREALVHLLDGTTLSPPAARLQGLAFDLTGSSNGELEGERELRLCADGRNEMALYQASCAKQAILWGGVAIGALLMG-SPVDAVTKYAALAEAQLKECFDANDEYTADAYMMLAFMHLLLQDHTKYFRYLSFSNNL 342          
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A6H5J7P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.760e-7
Identity = 48/173 (27.75%), Postives = 76/173 (43.93%), Query Frame = 1
Query:   13 ARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVM---------AFQDPLGTAKASAHDGGGEHALA----------------KAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISL 456
            ARLSPS ATGL+GL+EN Y+  +      +   +   I++A+ + M          F  P          G GEHAL                  AA   +LW  V  G +++G      +E ++  ARE +  C+DD + +  RA+  +A     + +  +F +Y  FA S+
Sbjct:   21 ARLSPSPATGLIGLKENAYIGDFFQTMGFLPITSESFIRKAMVNTMFRTMQERDPEFAGPEAGGVFGGGQGWGEHALVPGGGGGGLARAENAIENAAAACVLWSTVGVGCLIRG-RPKSSVEGYVRLAREALSVCFDDGTAETARAFTAMALFQDFMGNEDKFIKYIDFAKSI 192          
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A835ZK18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK18_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.320e-7
Identity = 51/163 (31.29%), Postives = 74/163 (45.40%), Query Frame = 1
Query:   19 LSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPL--------GTAKASA-------HDGGGEHALA-------------KAADRSLLWVAVACGMMMQGVTDLER---LEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLED 414
            +SPS ATGLLGLQE+ +L +     A         IQ A+ ++M  Q           G A A+             +HA                AA R  LW  +A G++M+GV DL     L  +L  AR  ++ C+D+ S + +RA+L LA +H  +ED
Sbjct:  143 MSPSAATGLLGLQEHDFLVVSIQMLADSG--LVRNIQPAIQELMTQQSERAAWAARCSGAASAAXLYXXXXXXXXXAQHAAPLRLLPPTPHEAARAAARRCRLWTVIAGGLVMRGVRDLRASAALHTYLRHARGALRLCHDEPSDEAVRAFLCLALLHFFIED 303          
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: D7FTC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC3_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.980e-6
Identity = 48/176 (27.27%), Postives = 75/176 (42.61%), Query Frame = 1
Query:    7 KLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVM---------AFQDPLGTAKASAHDGGGEHALA-----------------KAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISL 456
            K ARLSPS ATGL+GL+EN Y+  +      +   +   I++A+   M          F  P          G GE AL                   AA   +LW  V  G +++G      +E ++  ARE +  C+DD + +  RA+  +A     + +  +F +Y  FA S+
Sbjct:   31 KRARLSPSPATGLIGLKENAYIGDFFQTMGFLPITSESFIRKAMVSTMFRTMQERDPEFPGPEAGGVVGGGHGWGESALVPGXXXXXXLVRAESAVENAAAACVLWSTVGVGCLIRG-RPKSSVEGYVHLAREALSVCFDDGTAETARAFTAMALFQDFMGNEDKFIKYIDFAKSI 205          
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.910e-6
Identity = 47/174 (27.01%), Postives = 81/174 (46.55%), Query Frame = 1
Query:    7 KLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEH-----ALAKAADRSLL---------------WVAVACGMMMQGVTDLERLEPFLTRARECI-KECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS 465
            K  RLS S ATGL+ +QENT+L  +  C   +   T  +I+  +  +M    P  + ++   DG  +      A+A   D S +               W AVA G +++G + +E +  +   A+E + K        +V +A++ LAN+H  + D  RF++Y   + S  +S
Sbjct:    5 KRCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMV--PPASSQQSVFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPMDPSACTFWCAVALGALVKG-SPIESVTSYAQLAQEALAKSNSGPGDAEVAKAWVILANLHGFMGDKERFEKYLALSDSFLRS 175          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836CD00_9STRA3.330e-107100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CEN4_9STRA9.470e-3038.50Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A835YN27_9STRA7.480e-2641.83Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A836C7K5_9STRA2.870e-1234.06Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A835YKP4_9STRA9.780e-1041.49Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A836CL14_9STRA1.250e-728.41Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A6H5J7P2_9PHAE1.760e-727.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK18_9STRA3.320e-731.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FTC3_ECTSI1.980e-627.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCV4_ECTSI2.910e-627.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_40contigContig_40:335867..337445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147774|gw1.40.111.1
Hectar predicted targeting categorymitochondrion
TranscriptId148096
TrackFilteredModels1
ProteinId147774
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147774gene_8054Tribonema minus UTEX_B_3156 geneContig_40 335867..337445 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8054_1exon_8054_1Tribonema minus UTEX_B_3156 exonContig_40 335867..336288 +
exon_8054_2exon_8054_2Tribonema minus UTEX_B_3156 exonContig_40 337403..337445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8054CDS_8054Tribonema minus UTEX_B_3156 CDSContig_40 335867..336288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147774Trimin1|147774|gw1.40.111.1Tribonema minus UTEX_B_3156 polypeptideContig_40 335867..337445 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8054 ID=mRNA_8054|Name=jgi.p|Trimin1|147774|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_40:335867..337445+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCTCGAAGCTCGCCCGACTCAGCCCGTCCCATGCCACGGGCCTGCTAGG
CCTTCAGGAGAACACGTACCTGCAGATGTACTGCTCGTGCTACGCGGGCA
TAGCCTGGTTCACCTACGAGGAGATCCAGCGCGCCGTCGCCGACGTGATG
GCCTTTCAAGACCCCCTGGGCACGGCGAAGGCGAGCGCGCATGACGGCGG
GGGGGAGCACGCGCTAGCCAAGGCCGCAGACCGGTCCTTGCTGTGGGTTG
CCGTAGCGTGCGGGATGATGATGCAGGGGGTGACGGATCTGGAGCGGCTG
GAGCCATTTTTGACGCGCGCGCGGGAGTGCATCAAGGAGTGCTACGACGA
CGCGTCGCCGCAGGTGCTGCGGGCCTACCTGTTCCTGGCCAACGTGCACG
CCACCTTGGAGGATTACGGCAGGTTCCAGCGCTACTTTGGCTTTGCCATC
AGCCTCGCGCAGAGC
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protein sequence of jgi.p|Trimin1|147774

>Trimin1|147774|gw1.40.111.1 ID=Trimin1|147774|gw1.40.111.1|Name=jgi.p|Trimin1|147774|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVM
AFQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERL
EPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAI
SLAQS
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mRNA from alignment at Contig_40:335867..337445+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8054 ID=mRNA_8054|Name=jgi.p|Trimin1|147774|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1579bp|location=Sequence derived from alignment at Contig_40:335867..337445+ (Tribonema minus UTEX_B_3156 )
CTCTCGAAGCTCGCCCGACTCAGCCCGTCCCATGCCACGGGCCTGCTAGG CCTTCAGGAGAACACGTACCTGCAGATGTACTGCTCGTGCTACGCGGGCA TAGCCTGGTTCACCTACGAGGAGATCCAGCGCGCCGTCGCCGACGTGATG GCCTTTCAAGACCCCCTGGGCACGGCGAAGGCGAGCGCGCATGACGGCGG GGGGGAGCACGCGCTAGCCAAGGCCGCAGACCGGTCCTTGCTGTGGGTTG CCGTAGCGTGCGGGATGATGATGCAGGGGGTGACGGATCTGGAGCGGCTG GAGCCATTTTTGACGCGCGCGCGGGAGTGCATCAAGGAGTGCTACGACGA CGCGTCGCCGCAGGTGCTGCGGGCCTACCTGTTCCTGGCCAACGTGCACG CCACCTTGGAGGATTACGGCAGGTAAGCAACCCCCTGTCGACGCTCCCCT GCGCATCGTCCGCGTTGGCGGAAGTCGCTGCTGTGTACTTGTACTTTCCC ACAATCTCAATCACCTTCGAGTAAGCACACCAACAAAGGCAGCCGTTGGA AGTAGACATCAGCGACACCTGCAGCGACGGAAACCAAACGCCAGCCGCGC GCTTTAATTCATGAAGTGGACATGCCGTAGTCCATCGCCAACCACCAGCA TGACATTGTAACTGCAACAACTGCCAGCATGCGACGGCAATGTCATCATC TGACGGCTGTAACTGCCATTGCAACCTCTACAATATATTGCAGTGGACAT TGATCAAGGCCTGCAGGCACTGCAACAACGCGTGGAACATGCGGCTTGTG GGATGCAAGCAGGCCTTGAGTGTCAACTTGAAGTTGAAGGGCAGTGTGAT GAGAAACTGACTGAAAGAGACGCAATTAAGGTCACCGAAGTCACGGTCAT GGTGGCAGTCACCTGCCAATCCATGCTGAAGCTGTTACAATGCTGAGCGC CGAAGCTGCTATATGGAGAGAGGACCCACTGGCAGGCTGGCCCAGCCTGC ATTCTGTGCGCGTGACCTTTGCACTCGACTCATCACGCCAACAAACACTC TAAGACTTGCCAAGGCTGCTCACATGCATACAATCAATGACCACTGCCAC TGGCACAATGGTCTGACAGTGTGTGGTGCGCCGCCACCAACTGCATTAGA TGAGCACTGCTACTGGCACAATGGTGCGTCACCACCAACTTGATGTTCCT GGCGTGCCTCAACACGCGCGCAATGCAGGTCCCAGCGCTACTTTGGCTTT GCCATCAGCCTCGTGCAGAGCACAGCGGCGCTGAAGTTGCTGTGGAGAGA GTACTAGCTCAGCCTGCATCATGATACTGTGCGCGCAATCTTGCACCACT AGACTCATCACGCAACAAAGGCTTTTGCCAAGGTGACTCATGTATGCATA TATGAGCACTGCCACTGGCACAGTGGTCTGTGATGCGTTACCACCAACTG CAGCAATATATGAGCACTGCCACTGGCACAATGGTGCGTCACCACCAACT TCAAGCGCCCGGCGTGCCTCCACGCGCGCGACGCAGGTTCCAGCGCTACT TTGGCTTTGCCATCAGCCTCGCGCAGAGC
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Coding sequence (CDS) from alignment at Contig_40:335867..337445+

>mRNA_8054 ID=mRNA_8054|Name=jgi.p|Trimin1|147774|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_40:335867..337445+ (Tribonema minus UTEX_B_3156 )
CTCTCGAAGCTCGCCCGACTCAGCCCGTCCCATGCCACGGGCCTGCTAGG
CCTTCAGGAGAACACGTACCTGCAGATGTACTGCTCGTGCTACGCGGGCA
TAGCCTGGTTCACCTACGAGGAGATCCAGCGCGCCGTCGCCGACGTGATG
GCCTTTCAAGACCCCCTGGGCACGGCGAAGGCGAGCGCGCATGACGGCGG
GGGGGAGCACGCGCTAGCCAAGGCCGCAGACCGGTCCTTGCTGTGGGTTG
CCGTAGCGTGCGGGATGATGATGCAGGGGGTGACGGATCTGGAGCGGCTG
GAGCCATTTTTGACGCGCGCGCGGGAGTGCATCAAGGAGTGCTACGACGA
CGCGTCGCCGCAGGTGCTGCGGGCCTACCTGTTCCTGGCCAACGTGCACG
CCACCTTGGAGGATTACGGCAGGTTCCAGCGCTACTTTGGCTTTGCCATC
AGCCTCGCGCAGAGC
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