mRNA_8054 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A836CD00_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD00_9STRA) HSP 1 Score: 311 bits (796), Expect = 3.330e-107 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 Query: 1 LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS 465 LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS Sbjct: 1 LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS 155
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A836CEN4_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN4_9STRA) HSP 1 Score: 123 bits (309), Expect = 9.470e-30 Identity = 72/187 (38.50%), Postives = 100/187 (53.48%), Query Frame = 1 Query: 1 LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMA-------FQDPLGTAKASAHDGGGEHALAKAADR-------------------------SLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS 465 L+K R+SPS ATGLLGL+E+ +L YC YAGI + E+Q A+A +MA AADR +L+W+A+ G +MQGV + E +EP+L RA+E ++EC+DDA+PQVLRAYL ++ +H TLEDY RF YFG + +A+S Sbjct: 149 LTKYPRMSPSAATGLLGLREHGFLNAYCMAYAGIHFVDEPEMQSAIAQLMADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAADRPELXXXXXXXXXXXXXXXXXXXXXXALMWIAIVIGAIMQGVENTESVEPYLARAKEALRECHDDATPQVLRAYLLMSKLHVTLEDYPRFYHYFGISCGIAES 335
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A835YN27_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN27_9STRA) HSP 1 Score: 112 bits (280), Expect = 7.480e-26 Identity = 64/153 (41.83%), Postives = 87/153 (56.86%), Query Frame = 1 Query: 16 RLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMA----FQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQ 462 RLSPS ATGLLGL+EN +L+ + Y G+A ++QR+V DVM A + LW A+A G +QG D + +L R+R+ IK+CYDDA+P+VLRA L LA+V+A+ EDY RF RY G A S+A+ Sbjct: 135 RLSPSTATGLLGLRENDHLRAFLRAYTGVARVRESDVQRSVMDVMGRGXXXXXXXXXXXXXXXXXXXXXXXXXNAGTAFLWAAIAYGAQLQGGADTSAVSAYLARSRDAIKDCYDDATPEVLRATLLLADVYASAEDYTRFYRYVGLAASVAR 287
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A836C7K5_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7K5_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 2.870e-12 Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1 Query: 19 LSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEHALAKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIK--ECYDDASPQVLRAYLFLANVHATLEDYGRF 426 LSPS ATG+LGLQEN YL MY S +AG+ ++QR+V ++M + G++ + A A AA+R LW +A G ++ G + ++ R ++ A+ + LRA++ AN A LED R+ Sbjct: 241 LSPSIATGMLGLQENKYLFMYMSTFAGVPCVAESDLQRSVVELMGPRAATGSSXXXXXXXXPDRAAADAANRCTLWTGIANGALLLGAPE-HVYGRYMERGMRELRGGAAAAAATAETLRAHILAANTFAMLEDTARY 377
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A835YKP4_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP4_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 9.780e-10 Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1 Query: 208 HALAKAADRSLLWVAVAC----------------------GMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGR 423 +A+A +A++ LW A+A G ++QG T L+ +E +L RAR+ IKE YDDA+P+VLRAYL LA HAT DY R Sbjct: 195 NAVAVSANKCALWAAIASXXXXXXXXXXXXXXXXXXXXAYGALLQGRTALDVVEGYLARARDAIKEVYDDAAPEVLRAYLLLAIFHATQADYPR 288
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A836CL14_9STRA (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL14_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.250e-7 Identity = 50/176 (28.41%), Postives = 78/176 (44.32%), Query Frame = 1 Query: 7 KLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRA----VADVMAFQDPLGTAKASAHD--------------------GGGEHAL--AKAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISL 456 K ARL+PS ATG LGL E++YL + + F + I R + D P + A D G E AL A A +++LW VA G ++ G + ++ + + A +KEC+D AY+ LA +H L+D+ ++ RY F+ +L Sbjct: 168 KRARLTPSSATGFLGLAEHSYLTAVLDDFLYVFPFVDQGIMREALVHLLDGTTLSPPAARLQGLAFDLTGSSNGELEGERELRLCADGRNEMALYQASCAKQAILWGGVAIGALLMG-SPVDAVTKYAALAEAQLKECFDANDEYTADAYMMLAFMHLLLQDHTKYFRYLSFSNNL 342
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A6H5J7P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P2_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 1.760e-7 Identity = 48/173 (27.75%), Postives = 76/173 (43.93%), Query Frame = 1 Query: 13 ARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVM---------AFQDPLGTAKASAHDGGGEHALA----------------KAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISL 456 ARLSPS ATGL+GL+EN Y+ + + + I++A+ + M F P G GEHAL AA +LW V G +++G +E ++ ARE + C+DD + + RA+ +A + + +F +Y FA S+ Sbjct: 21 ARLSPSPATGLIGLKENAYIGDFFQTMGFLPITSESFIRKAMVNTMFRTMQERDPEFAGPEAGGVFGGGQGWGEHALVPGGGGGGLARAENAIENAAAACVLWSTVGVGCLIRG-RPKSSVEGYVRLAREALSVCFDDGTAETARAFTAMALFQDFMGNEDKFIKYIDFAKSI 192
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: A0A835ZK18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK18_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 3.320e-7 Identity = 51/163 (31.29%), Postives = 74/163 (45.40%), Query Frame = 1 Query: 19 LSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPL--------GTAKASA-------HDGGGEHALA-------------KAADRSLLWVAVACGMMMQGVTDLER---LEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLED 414 +SPS ATGLLGLQE+ +L + A IQ A+ ++M Q G A A+ +HA AA R LW +A G++M+GV DL L +L AR ++ C+D+ S + +RA+L LA +H +ED Sbjct: 143 MSPSAATGLLGLQEHDFLVVSIQMLADSG--LVRNIQPAIQELMTQQSERAAWAARCSGAASAAXLYXXXXXXXXXAQHAAPLRLLPPTPHEAARAAARRCRLWTVIAGGLVMRGVRDLRASAALHTYLRHARGALRLCHDEPSDEAVRAFLCLALLHFFIED 303
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: D7FTC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC3_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 1.980e-6 Identity = 48/176 (27.27%), Postives = 75/176 (42.61%), Query Frame = 1 Query: 7 KLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVM---------AFQDPLGTAKASAHDGGGEHALA-----------------KAADRSLLWVAVACGMMMQGVTDLERLEPFLTRARECIKECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISL 456 K ARLSPS ATGL+GL+EN Y+ + + + I++A+ M F P G GE AL AA +LW V G +++G +E ++ ARE + C+DD + + RA+ +A + + +F +Y FA S+ Sbjct: 31 KRARLSPSPATGLIGLKENAYIGDFFQTMGFLPITSESFIRKAMVSTMFRTMQERDPEFPGPEAGGVVGGGHGWGESALVPGXXXXXXLVRAESAVENAAAACVLWSTVGVGCLIRG-RPKSSVEGYVHLAREALSVCFDDGTAETARAFTAMALFQDFMGNEDKFIKYIDFAKSI 205
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 2.910e-6 Identity = 47/174 (27.01%), Postives = 81/174 (46.55%), Query Frame = 1 Query: 7 KLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMAFQDPLGTAKASAHDGGGEH-----ALAKAADRSLL---------------WVAVACGMMMQGVTDLERLEPFLTRARECI-KECYDDASPQVLRAYLFLANVHATLEDYGRFQRYFGFAISLAQS 465 K RLS S ATGL+ +QENT+L + C + T +I+ + +M P + ++ DG + A+A D S + W AVA G +++G + +E + + A+E + K +V +A++ LAN+H + D RF++Y + S +S Sbjct: 5 KRCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMV--PPASSQQSVFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPMDPSACTFWCAVALGALVKG-SPIESVTSYAQLAQEALAKSNSGPGDAEVAKAWVILANLHGFMGDKERFEKYLALSDSFLRS 175 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147774 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8054 ID=mRNA_8054|Name=jgi.p|Trimin1|147774|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_40:335867..337445+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCTCGAAGCTCGCCCGACTCAGCCCGTCCCATGCCACGGGCCTGCTAGGback to top protein sequence of jgi.p|Trimin1|147774 >Trimin1|147774|gw1.40.111.1 ID=Trimin1|147774|gw1.40.111.1|Name=jgi.p|Trimin1|147774|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp LSKLARLSPSHATGLLGLQENTYLQMYCSCYAGIAWFTYEEIQRAVADVMback to top mRNA from alignment at Contig_40:335867..337445+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8054 ID=mRNA_8054|Name=jgi.p|Trimin1|147774|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1579bp|location=Sequence derived from alignment at Contig_40:335867..337445+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_40:335867..337445+ >mRNA_8054 ID=mRNA_8054|Name=jgi.p|Trimin1|147774|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_40:335867..337445+ (Tribonema minus UTEX_B_3156 )back to top |