mRNA_8015 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A836C7U0_9STRA (DEP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U0_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.340e-50 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
Query: 1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD
Sbjct: 1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 84
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A2K3DW24_CHLRE (DEP domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DW24_CHLRE) HSP 1 Score: 86.3 bits (212), Expect = 7.670e-18 Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
++ LA M G + ++ R R YR+CFVG+EAV WL AAGAAA A A+ALGN M+ G+F HV EH FED+ LFYRF+DD
Sbjct: 8 DLLQLATAMRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDD 91
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A835W5K2_CHLIN (DEP domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W5K2_CHLIN) HSP 1 Score: 84.7 bits (208), Expect = 2.660e-17 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
++ LA + G + ++ R R YR+CFVG+EAV WL AAGAAA A A+ALGN M+ G+F HV EH FED+ LFYRF+DD
Sbjct: 23 DLLQLAAALRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDD 106
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A150GGG8_GONPE (DEP domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GGG8_GONPE) HSP 1 Score: 84.0 bits (206), Expect = 4.910e-17 Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query: 13 LADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
LA + LD+R R LR YR CFVGR+AV W+ AAGAAA A A+ALG+ MLR G+ HV EH FED LFYRF++D
Sbjct: 10 LAAALRAGLDIRDRRYLLRTYRRCFVGRDAVAWMLAAGAAAGPAQAVALGDAMLRAGLLHHVLYEHGFEDALLFYRFAED 89
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A835WVW9_9CHLO (DEP domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WVW9_9CHLO) HSP 1 Score: 82.4 bits (202), Expect = 1.730e-16 Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
++ LA + + V+ R R YR+CFVG+EAV WL AAGAAA A A+ALGN M+ G+F HV EH FED+ LFYRF+DD
Sbjct: 8 DLLQLAAALRRGVRVKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGAAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDD 91
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: D7FIE7_ECTSI (DEP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE7_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 3.400e-16 Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWL-RAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
EI L D+M L + R RLR Y+ CFVG++AV+WL +A+ +ST A+ALGN ++ +G F HVT +H F+D LFYRF++D
Sbjct: 20 EIKELGDKMHAELRITDRTYRLRTYKQCFVGKDAVQWLIKASSRVSSTEEAVALGNLLMDLGYFHHVTRDHPFQDSGLFYRFAED 104
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A0D2X2F7_CAPO3 (Phosphoinositide phospholipase C n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X2F7_CAPO3) HSP 1 Score: 71.6 bits (174), Expect = 1.080e-12 Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 13 LADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFS 246
LA RM+ +L+V+ R LR Y+ CFVG EAV WL + G A A+ +GN M++ +F HVT +H+F++E LFYR++
Sbjct: 522 LAARMMSSLEVKDRKFLLRTYKDCFVGTEAVDWLLSRGVAEDEEDAVRIGNLMIKNNLFQHVTLDHLFKNENLFYRYT 599
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A0L0DFE6_THETB (DEP domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DFE6_THETB) HSP 1 Score: 65.1 bits (157), Expect = 2.170e-10 Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 34 ALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTA-HALALGNEMLRMGVFSHVT-AEHVFEDEALFYRFSDD 252
++D+R R RLR YR CFVG EAVR L+A +T ALA+GN M+R GVFSHV + VF D FYRFS D
Sbjct: 881 SIDIRSRRYRLRVYRECFVGNEAVRLLKATFPDVNTTGQALAVGNTMMREGVFSHVVDKKQVFRDGHFFYRFSKD 955
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: UPI001CEC968A (hypothetical protein n=1 Tax=Leptolyngbya sp. PCC 7375 TaxID=102129 RepID=UPI001CEC968A) HSP 1 Score: 60.5 bits (145), Expect = 2.750e-10 Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 37 LDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
LD+++R RL Y +CFVG EAV WL A A A +G ++ G+F HVT EH F+DE LFYRF +D
Sbjct: 7 LDIQNRRFRLTVYPNCFVGSEAVTWLAKTQNATREA-AARIGQALVEQGLFHHVTDEHPFKDEYLFYRFYED 77
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 4.010e-10 Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 10 ALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFS 246
ALA RM L+VR R RLR YRSCF+G +AV WL++ S AL GN+M+ G+ H T H E+ LFY+F+
Sbjct: 360 ALARRMSEELEVRDRHHRLRFYRSCFLGEDAVSWLQSECGPCSVEEALWRGNKMVAAGLIYHCTYGHSLENSRLFYKFA 438 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8015 ID=mRNA_8015|Name=jgi.p|Trimin1|156209|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_94:576481..576732+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGATCTGCGCGCTCGCGGACCGCATGATCGGCGCGCTCGACGTGCGCCAback to top protein sequence of jgi.p|Trimin1|156209 >Trimin1|156209|gw1.94.188.1 ID=Trimin1|156209|gw1.94.188.1|Name=jgi.p|Trimin1|156209|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHAback to top mRNA from alignment at Contig_94:576481..576732+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8015 ID=mRNA_8015|Name=jgi.p|Trimin1|156209|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_94:576481..576732+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_94:576481..576732+ >mRNA_8015 ID=mRNA_8015|Name=jgi.p|Trimin1|156209|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=252bp|location=Sequence derived from alignment at Contig_94:576481..576732+ (Tribonema minus UTEX_B_3156 )back to top |