mRNA_8015 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156209
Unique NamemRNA_8015
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A836C7U0_9STRA (DEP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U0_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.340e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
            EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD
Sbjct:    1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 84          
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A2K3DW24_CHLRE (DEP domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DW24_CHLRE)

HSP 1 Score: 86.3 bits (212), Expect = 7.670e-18
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
            ++  LA  M G + ++ R    R YR+CFVG+EAV WL AAGAAA  A A+ALGN M+  G+F HV  EH FED+ LFYRF+DD
Sbjct:    8 DLLQLATAMRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDD 91          
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A835W5K2_CHLIN (DEP domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W5K2_CHLIN)

HSP 1 Score: 84.7 bits (208), Expect = 2.660e-17
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
            ++  LA  + G + ++ R    R YR+CFVG+EAV WL AAGAAA  A A+ALGN M+  G+F HV  EH FED+ LFYRF+DD
Sbjct:   23 DLLQLAAALRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDD 106          
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A150GGG8_GONPE (DEP domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GGG8_GONPE)

HSP 1 Score: 84.0 bits (206), Expect = 4.910e-17
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   13 LADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
            LA  +   LD+R R   LR YR CFVGR+AV W+ AAGAAA  A A+ALG+ MLR G+  HV  EH FED  LFYRF++D
Sbjct:   10 LAAALRAGLDIRDRRYLLRTYRRCFVGRDAVAWMLAAGAAAGPAQAVALGDAMLRAGLLHHVLYEHGFEDALLFYRFAED 89          
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A835WVW9_9CHLO (DEP domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WVW9_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 1.730e-16
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
            ++  LA  +   + V+ R    R YR+CFVG+EAV WL AAGAAA  A A+ALGN M+  G+F HV  EH FED+ LFYRF+DD
Sbjct:    8 DLLQLAAALRRGVRVKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGAAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDD 91          
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: D7FIE7_ECTSI (DEP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE7_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.400e-16
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWL-RAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
            EI  L D+M   L +  R  RLR Y+ CFVG++AV+WL +A+   +ST  A+ALGN ++ +G F HVT +H F+D  LFYRF++D
Sbjct:   20 EIKELGDKMHAELRITDRTYRLRTYKQCFVGKDAVQWLIKASSRVSSTEEAVALGNLLMDLGYFHHVTRDHPFQDSGLFYRFAED 104          
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A0D2X2F7_CAPO3 (Phosphoinositide phospholipase C n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X2F7_CAPO3)

HSP 1 Score: 71.6 bits (174), Expect = 1.080e-12
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   13 LADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFS 246
            LA RM+ +L+V+ R   LR Y+ CFVG EAV WL + G A     A+ +GN M++  +F HVT +H+F++E LFYR++
Sbjct:  522 LAARMMSSLEVKDRKFLLRTYKDCFVGTEAVDWLLSRGVAEDEEDAVRIGNLMIKNNLFQHVTLDHLFKNENLFYRYT 599          
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: A0A0L0DFE6_THETB (DEP domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DFE6_THETB)

HSP 1 Score: 65.1 bits (157), Expect = 2.170e-10
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   34 ALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTA-HALALGNEMLRMGVFSHVT-AEHVFEDEALFYRFSDD 252
            ++D+R R  RLR YR CFVG EAVR L+A     +T   ALA+GN M+R GVFSHV   + VF D   FYRFS D
Sbjct:  881 SIDIRSRRYRLRVYRECFVGNEAVRLLKATFPDVNTTGQALAVGNTMMREGVFSHVVDKKQVFRDGHFFYRFSKD 955          
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: UPI001CEC968A (hypothetical protein n=1 Tax=Leptolyngbya sp. PCC 7375 TaxID=102129 RepID=UPI001CEC968A)

HSP 1 Score: 60.5 bits (145), Expect = 2.750e-10
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   37 LDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD 252
            LD+++R  RL  Y +CFVG EAV WL     A   A A  +G  ++  G+F HVT EH F+DE LFYRF +D
Sbjct:    7 LDIQNRRFRLTVYPNCFVGSEAVTWLAKTQNATREA-AARIGQALVEQGLFHHVTDEHPFKDEYLFYRFYED 77          
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.010e-10
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   10 ALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHALALGNEMLRMGVFSHVTAEHVFEDEALFYRFS 246
            ALA RM   L+VR R  RLR YRSCF+G +AV WL++     S   AL  GN+M+  G+  H T  H  E+  LFY+F+
Sbjct:  360 ALARRMSEELEVRDRHHRLRFYRSCFLGEDAVSWLQSECGPCSVEEALWRGNKMVAAGLIYHCTYGHSLENSRLFYKFA 438          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156209 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7U0_9STRA1.340e-50100.00DEP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A2K3DW24_CHLRE7.670e-1854.76DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A835W5K2_CHLIN2.660e-1753.57DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A150GGG8_GONPE4.910e-1757.50DEP domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A835WVW9_9CHLO1.730e-1653.57DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
D7FIE7_ECTSI3.400e-1648.24DEP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0D2X2F7_CAPO31.080e-1246.15Phosphoinositide phospholipase C n=1 Tax=Capsaspor... [more]
A0A0L0DFE6_THETB2.170e-1054.67DEP domain-containing protein n=1 Tax=Thecamonas t... [more]
UPI001CEC968A2.750e-1048.61hypothetical protein n=1 Tax=Leptolyngbya sp. PCC ... [more]
D8LTP0_ECTSI4.010e-1046.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:576481..576732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156209|gw1.94.188.1
BRITEko00000,ko00001,ko04131
KEGG Pathwayko04015,ko04024,ko04072,ko04261,ko04670,ko04911,map04015,map04024,map04072,map04261,map04670,map04911
KEGG koko:K04351
Descriptionpositive regulation of potassium:proton exchanging ATPase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3629@1|root,KOG2378@2759|Eukaryota
Evalue5.58e-17
Seed ortholog2880.D7FIE7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEP domain
Ec32 orthologEc-28_000020.1
TranscriptId156531
TrackFilteredModels1
ProteinId156209
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156209gene_8015Tribonema minus UTEX_B_3156 geneContig_94 576481..576732 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8015_1exon_8015_1Tribonema minus UTEX_B_3156 exonContig_94 576481..576732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8015CDS_8015Tribonema minus UTEX_B_3156 CDSContig_94 576481..576732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156209Trimin1|156209|gw1.94.188.1Tribonema minus UTEX_B_3156 polypeptideContig_94 576481..576732 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8015 ID=mRNA_8015|Name=jgi.p|Trimin1|156209|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_94:576481..576732+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGATCTGCGCGCTCGCGGACCGCATGATCGGCGCGCTCGACGTGCGCCA
CCGCGTCTCGCGCCTGCGCCGCTACCGCAGCTGCTTCGTCGGCCGCGAGG
CAGTGCGCTGGTTGCGCGCCGCGGGCGCCGCCGCGAGCACCGCGCACGCG
CTCGCGCTCGGCAACGAGATGCTCCGCATGGGCGTCTTCAGCCACGTCAC
CGCAGAGCACGTCTTCGAGGACGAGGCCCTGTTCTACCGCTTCTCGGATG
AC
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protein sequence of jgi.p|Trimin1|156209

>Trimin1|156209|gw1.94.188.1 ID=Trimin1|156209|gw1.94.188.1|Name=jgi.p|Trimin1|156209|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp
EICALADRMIGALDVRHRVSRLRRYRSCFVGREAVRWLRAAGAAASTAHA
LALGNEMLRMGVFSHVTAEHVFEDEALFYRFSDD
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mRNA from alignment at Contig_94:576481..576732+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8015 ID=mRNA_8015|Name=jgi.p|Trimin1|156209|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_94:576481..576732+ (Tribonema minus UTEX_B_3156 )
GAGATCTGCGCGCTCGCGGACCGCATGATCGGCGCGCTCGACGTGCGCCA CCGCGTCTCGCGCCTGCGCCGCTACCGCAGCTGCTTCGTCGGCCGCGAGG CAGTGCGCTGGTTGCGCGCCGCGGGCGCCGCCGCGAGCACCGCGCACGCG CTCGCGCTCGGCAACGAGATGCTCCGCATGGGCGTCTTCAGCCACGTCAC CGCAGAGCACGTCTTCGAGGACGAGGCCCTGTTCTACCGCTTCTCGGATG AC
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Coding sequence (CDS) from alignment at Contig_94:576481..576732+

>mRNA_8015 ID=mRNA_8015|Name=jgi.p|Trimin1|156209|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=252bp|location=Sequence derived from alignment at Contig_94:576481..576732+ (Tribonema minus UTEX_B_3156 )
GAGATCTGCGCGCTCGCGGACCGCATGATCGGCGCGCTCGACGTGCGCCA
CCGCGTCTCGCGCCTGCGCCGCTACCGCAGCTGCTTCGTCGGCCGCGAGG
CAGTGCGCTGGTTGCGCGCCGCGGGCGCCGCCGCGAGCACCGCGCACGCG
CTCGCGCTCGGCAACGAGATGCTCCGCATGGGCGTCTTCAGCCACGTCAC
CGCAGAGCACGTCTTCGAGGACGAGGCCCTGTTCTACCGCTTCTCGGATG
AC
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