mRNA_8004 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A835YGV0_9STRA (TB2/DP1, HVA22 family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGV0_9STRA) HSP 1 Score: 537 bits (1384), Expect = 1.540e-193 Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1
Query: 1 LLMTVTGKGGQCGLCDNITSLLLHLEDGSPDAIECSAICLWRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEPTGTGWAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWAPHYYEAKLAAVLYLMFGRGADLVYRRVHRAFVSAQRL 765
LLMTVTGKGGQCGLCDNITSLLLHLEDGSPDAIECSAICLWRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEPTGTGWAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWAPHYYEAKLAAVLYLMFGRGADLVYRRVHRAFVSAQRL
Sbjct: 1 LLMTVTGKGGQCGLCDNITSLLLHLEDGSPDAIECSAICLWRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEPTGTGWAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWAPHYYEAKLAAVLYLMFGRGADLVYRRVHRAFVSAQRL 255
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A7S0V805_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V805_9CRYP) HSP 1 Score: 220 bits (561), Expect = 4.120e-65 Identity = 109/249 (43.78%), Postives = 148/249 (59.44%), Query Frame = 1
Query: 19 GKGGQCGLCDNITSLLLHLE-DGSPDAIECSAICLWRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEPTGTGWAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWAPHYYEAKLAAVLYLMFGRGADLVYRRVHRAFVSAQR 762
G G C LCD + + +L E DGS ++C+A+C W +C+ C ++ A+ S +PCVAAG CPA D +G + +C Y + SC P C K P CQL G+ ++ + N GALA A+ +P+CGEPGAHA CVNEPTG G A ++Y L + + +S+ A+ETPGGDDDRQWL+FW+I E DVLLSW P+YYEAKL V +L+ G+D +YR VH F A +
Sbjct: 79 GDGAACTLCDRVMNTMLSGESDGSVQDVDCNALC-WSLSKCVNMCTKLVAAIHTSGRFPCVAAGYCPAMDEFGALPRCKYRFPA-SCSPSNICSFKF----PKCQLSDGYKKWRKMNAMISENVGALAGALGRMPKCGEPGAHALLCVNEPTGLGLWAKRMAYLLAAWAAI-KSIEAIETPGGDDDRQWLSFWVIYLAMTVFESVSDVLLSWLPNYYEAKLVFVGWLVLFHGSDWLYRSVHSLFKRANK 320
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A7S4UTK0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UTK0_GUITH) HSP 1 Score: 217 bits (552), Expect = 2.030e-62 Identity = 113/256 (44.14%), Postives = 152/256 (59.38%), Query Frame = 1
Query: 1 LLMTVTGKG--GQCGLCDNITSLLLHLEDGSPDAIE----CSAICLWRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEPTGTGWAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWAPHYYEAKLAAVLYLMFG-RGADLVYRRVHRAF 747
L T+ G+G +C LCD + + +L D + +A+E C +C ++F+RC+ CE++ ++++ SS +PC A G CP D +GE QC Y C P C +K R P P C+LK G+ ++ Y L N GALA AV++LP+CGE GA FCVNE TG + Y LV VVG + S+RA+ET GGDDDRQWL FW+I F F +ERF VLLS P YYE KL V++L GA Y +HR F
Sbjct: 45 LWQTILGRGKEARCSLCDEVVNHILDFGD-TKEALEDNGFCEDLCPFKFRRCVDMCEKLIKSITTSSKFPCEAIGACPELDEFGEEIQCKYQMGS-GCTPSHMCKLKARLPMPRCELKDGYKQWKKYKMVLFENVGALAEAVKKLPKCGEEGASEVFCVNEATGFSLICEYLGYFLVFVVGSFNSIRAIETKGGDDDRQWLTFWVIYFIFSMVERFSSVLLSRLPVYYEVKLLLVIWLFPPFYGARWCYVTIHRTF 298
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A7S0I128_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I128_9CRYP) HSP 1 Score: 215 bits (548), Expect = 1.540e-61 Identity = 109/252 (43.25%), Postives = 149/252 (59.13%), Query Frame = 1
Query: 19 GKGGQCGLCDNITSLLLHLEDGSPDAIE----CSAICLWRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEPTGTGWAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWAPHYYEAKLAAVLYLMFG-RGADLVYRRVHRAFVSAQ 759
GK +C LCD + + +L D + DA+E C +C ++F++C++ C+ + ++++ SS +PC A G CP D YGE +C Y C P C +K R P P C+LK G+ ++ Y L N GALA AV+ LP+CGE GA FCVNE TG + Y +V V+G + S+RA+ET GGDDDRQWL FW+I F F +ERF VLLS P YYE KL V++L GA Y +HR F A+
Sbjct: 102 GKEARCNLCDEVVNHILDFGD-TRDALEDNGFCENLCPFKFRKCVEMCQSLVQSITTSSKFPCEAIGACPELDEYGEEVECKYQMGS-GCTPSHMCKLKARLPIPRCELKNGYKQWKKYRMVLFENVGALAEAVKRLPKCGEEGASEVFCVNEATGLSLVCEYLGYFMVFVIGSFNSIRAIETKGGDDDRQWLTFWVIYFLFSMVERFSSVLLSRLPVYYEIKLLVVIWLFPPFYGARWCYVTIHRIFTGAR 351
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A7S0J7X7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J7X7_9EUKA) HSP 1 Score: 195 bits (496), Expect = 8.440e-58 Identity = 105/256 (41.02%), Postives = 149/256 (58.20%), Query Frame = 1
Query: 19 GKGGQCGLCDNITSLLL---HLEDGSPDA-IECSAICLWRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEPTGTG----WAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWAPHYYEAKLAAVLYLMFGRGADLVYRRVHRAFVSAQR 762
G CGLCD + ++L LE S I+CS++C +RF++C +TCE I A++ S+ +PCVA G+CPA+D +GEV+ C +S++ C P C K P C+L+ G ++ ++ L N A +A+R RC EPGA +C+ E TG G W MV+ + +G+ ++ A+ETPGG DDRQWL FW+IM E+F DVLLSW P YYE K +L+LMF GAD++YR R R
Sbjct: 44 GNDASCGLCDKLVGVVLKQMELETMSEGGDIDCSSLC-FRFKKCTRTCETITGAMANSTGFPCVAVGICPAADEFGEVS-CRWSYRSMGCEPTRSCEYKF----PKCELRSGLKKWKQVSRLLSDNVRAFDQALRFRRRCSEPGA-GPYCIREATGLGRLANWGGMVLIF-----IGLGLAIHAIETPGGADDRQWLTFWMIMVLMCIAEQFTDVLLSWMPVYYEIKFLLLLWLMFYHGADMLYRGARRGLKKLSR 287
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A7S3NJ17_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ17_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.040e-41 Identity = 103/277 (37.18%), Postives = 143/277 (51.62%), Query Frame = 1
Query: 34 CGLCDNITSLLLHLEDGSPDAIECSAIC---LWRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVN----QCSYSWKQRSCLPEGPCYM------KLRF-------------PRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEPT-------GTGWAAMV---------VSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLER-FVDVLLSWAPHYYEAKLAAVLYLMFGRGADLVYRRV 735
C LCD+ SLLL + SP+ + C A+C + RC+ CERI A+S SSHYPC+AAG+C + G V+ CSY K RSC P C M LR+ R C+ PG + Y ++ R+ ALA A+ P CGEPGAH FCV + + +GW + + +S LV + G+++S+RAVETPGG D +Q L FW I+ + LER +LLS YY AKL+ V++L+ G+ Y R+
Sbjct: 121 CELCDSFLSLLLKFDSVSPEDVSCHALCPGVMLNKDRCVAHCERIVSAISTSSHYPCMAAGLCQHEET-GRVSILTLDCSYDEKARSCSPSSLCRMTKTHFFSLRWWKGVLALHAFRPRARTRCEPHPGLARWASYQSSVARHGRALASALVNQPLCGEPGAHPVFCVRDVSVNYFQDHQSGWHSYLAHFDLACDRLSVLLVVIFGLYRSIRAVETPGGADAKQHLTFWCIVTISYALERNLARILLSRLSFYYVAKLSVVIWLVLFEGSATCYHRL 396
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A0M0JZG6_9EUKA (Receptor expression-enhancing protein 5-like protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZG6_9EUKA) HSP 1 Score: 157 bits (398), Expect = 3.530e-40 Identity = 97/248 (39.11%), Postives = 134/248 (54.03%), Query Frame = 1
Query: 25 GGQCGLCDNITSLLLH------LEDGSPDAIECSAICL---WRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEPTGTGWAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWAPHYYEAKLAAVLYLMFGRGADLVYRRVHR 741
G +C LC + ++L L DG+ I+C ICL ++ Q CI TC +I A+ S+ +PC AG CPA D +G+V S + C P+ C+ + FP CQLKPG + T + GAL A R+ P C+ +P GTG A V L V G+W S+ A+E+PGGDDDRQWL FW+I E F D+LLS P YYE KL+ +++L+F +GAD +YR + R
Sbjct: 47 GAKCELCTVLVGIMLAKLDVTALNDGT---IDCQTICLGLPFKAQ-CIGTCGKIIGAMENSTAFPCNGAGFCPAVDEFGQV---SCTGGPLGCTPKTACFYQ--FPG-GCQLKPGVASWRRMTHLVSTEIGALGAAFRQRPPLCSQAKPNQPCILDPEGTGMLANYVGLGLY-VYGLWCSLLAIESPGGDDDRQWLTFWLIALLLTFTEGFYDLLLSRLPIYYELKLSFLIWLIFRKGADEIYRELRR 283
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A7S4KQS6_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KQS6_GUITH) HSP 1 Score: 134 bits (336), Expect = 3.980e-35 Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 19 GKGGQCGLCDNITSLLLHLE-DGSPDAIECSAICLWRFQRCIKTCERIKRALSESSHYPCVAAGMCPASDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEPGAHATFCVNEP 468
G+G C LCD + +++L E +G I+C A+C + +RCI C+++ +ALSESS +PCVAAG CP D +GEV +C Y + SC P C K P CQL G+ ++ + + N GA A A+ + P+CGEPGAH +FC+NEP
Sbjct: 63 GEGAMCTLCDKVMTMMLSGEAEGGLSDIDCRAMC-FGLKRCITICDKLVKALSESSKFPCVAAGYCPQIDEFGEVPKCKYHFPA-SCEPSNMCTYKF----PGCQLSDGYKKWRKMNKMMSENVGAPANALGKAPKCGEPGAHPSFCINEP 207
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A7S4QNW1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QNW1_9STRA) HSP 1 Score: 139 bits (350), Expect = 6.150e-34 Identity = 85/249 (34.14%), Postives = 130/249 (52.21%), Query Frame = 1
Query: 34 CGLCDNITSLLLHLEDGSPDAIECSAICLWRFQRCIKTCERIKRALSESSHYPCVAAGMCPA-----------SDAYGEVNQCSYSWKQRSCLPEGPCYMKLRFPRPSCQLKPGFLEFNHYTQALRRNTGALARAVRELPRCGEP-GAHATFCVNEPTGTGWAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWA-PHYYEAKLAAVLYLMFGRGADLVYRRVHR 741
C LCD + L+ + D I CS IC +R +RC+ CE +K + +PCV+AG CPA D V +C + Q C P C ++ R C+LKPG ++ + + A+A A+ P C E GA FC+ +P G + A +++ LV VGV++S++A+ TPG DDD Q L FW+++ ++E + V+LS P Y+ AK V +L+F GA+ +YRR+ R
Sbjct: 89 CQLCDRVMEDLMEATEDVQD-IPCSIIC-FRMKRCVDMCEGLKEVQESAQEFPCVSAGYCPAPDDDEYAVERGGDNVDGVPECRMNNFQ--CGPASHCQRVMKGLRLRCELKPGIKKWVQMRRHALGSAVAVASAMMTWPHCSEENGAETQFCIADPRGYAYVAHLITMFLVFGVGVYRSLKALMTPGSDDDAQCLTFWLVVAVLSSIEGYAKVILSQNFPPYFYAKCLFVAWLLFNDGAEKIYRRLIR 333
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Match: A0A6T8HR41_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8HR41_HEMAN) HSP 1 Score: 134 bits (338), Expect = 7.370e-34 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query: 388 GALARAVRELPRCGEPGAHATFCVNEPTGTGWAAMVVSYALVSVVGVWQSVRAVETPGGDDDRQWLAFWIIMFGFFTLERFVDVLLSWAPHYYEAKLAAVLYLMFGRGADLVYRRVH 738
GALA A+ +P+CGEPGAHA CVNEPTG G A +Y L + + +S+ A+ETPGGDDDRQWL+FW+I E DVLLSW P+YYEAKL +++L+ G+D +YR VH
Sbjct: 2 GALAGALGRMPKCGEPGAHALLCVNEPTGLGLWAKRTAYLLAAWAAI-KSIEAIETPGGDDDRQWLSFWVIYLAMTVFESVSDVLLSWLPNYYEAKLVFLVWLVLFHGSDWLYRSVH 117 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129082 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8004 ID=mRNA_8004|Name=jgi.p|Trimin1|129082|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=765bp|location=Sequence derived from alignment at Contig_94:526421..528939- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGCTGATGACGGTCACCGGCAAAGGCGGCCAGTGCGGCCTCTGCGACAAback to top protein sequence of jgi.p|Trimin1|129082 >Trimin1|129082|gw1.94.5.1 ID=Trimin1|129082|gw1.94.5.1|Name=jgi.p|Trimin1|129082|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=255bp LLMTVTGKGGQCGLCDNITSLLLHLEDGSPDAIECSAICLWRFQRCIKTCback to top mRNA from alignment at Contig_94:526421..528939- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8004 ID=mRNA_8004|Name=jgi.p|Trimin1|129082|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2519bp|location=Sequence derived from alignment at Contig_94:526421..528939- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_94:526421..528939- >mRNA_8004 ID=mRNA_8004|Name=jgi.p|Trimin1|129082|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=765bp|location=Sequence derived from alignment at Contig_94:526421..528939- (Tribonema minus UTEX_B_3156 )back to top |