mRNA_80 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: A0A835Z0Q4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q4_9STRA) HSP 1 Score: 768 bits (1982), Expect = 9.600e-280 Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 1 Query: 1 MACAFSSVSAFSAVLNWAPSAEACLIQYGLGTGGRFTTAAEVAGGACKFTALNLRPSQTYRARVVTARHGVVVAQGEFVTRSRSDSDIAAMYESLRGDGGELDATDLDEEAHDALIDALGAVAKEGDVVHTAITVHGSVRHARATVALPGGEVVARPGDHLLMPFARRGDPCSVTIKSASGDGMLFEYCPDDDTVIVAGVRHQVGDRFVCFGQSAMIARGSIVVAFTNSVTATYPHSATLASKATTQGTTYFNAVSMSSATFTGQQTLGQTGKTVQSHYVYHPSNGTTQEIARHISSVASNQQDGTYSLGLSHADGASTFIDPVIQCARDETRFTSSDATTTVNSSFTKAGLSFDNADAALYLGANKEFRLKFTAGTGGTNYLSIDALVNGSYVTKSSFSN 1203 MACAFSSVSAFSAVLNWAPSAEACLIQYGLGTGGRFTTAAEVAGGACKFTALNLRPSQTYRARVVTARHGVVVAQGEFVTRSRSDSDIAAMYESLRGDGGELDATDLDEEAHDALIDALGAVAKEGDVVHTAITVHGSVRHARATVALPGGEVVARPGDHLLMPFARRGDPCSVTIKSASGDGMLFEYCPDDDTVIVAGVRHQVGDRFVCFGQSAMIARGSIVVAFTNSVTATYPHSATLASKATTQGTTYFNAVSMSSATFTGQQTLGQTGKTVQSHYVYHPSNGTTQEIARHISSVASNQQDGTYSLGLSHADGASTFIDPVIQCARDETRFTSSDATTTVNSSFTKAGLSFDNADAALYLGANKEFRLKFTAGTGGTNYLSIDALVNGSYVTKSSFSN Sbjct: 1 MACAFSSVSAFSAVLNWAPSAEACLIQYGLGTGGRFTTAAEVAGGACKFTALNLRPSQTYRARVVTARHGVVVAQGEFVTRSRSDSDIAAMYESLRGDGGELDATDLDEEAHDALIDALGAVAKEGDVVHTAITVHGSVRHARATVALPGGEVVARPGDHLLMPFARRGDPCSVTIKSASGDGMLFEYCPDDDTVIVAGVRHQVGDRFVCFGQSAMIARGSIVVAFTNSVTATYPHSATLASKATTQGTTYFNAVSMSSATFTGQQTLGQTGKTVQSHYVYHPSNGTTQEIARHISSVASNQQDGTYSLGLSHADGASTFIDPVIQCARDETRFTSSDATTTVNSSFTKAGLSFDNADAALYLGANKEFRLKFTAGTGGTNYLSIDALVNGSYVTKSSFSN 401
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: A0A835Z6C1_9STRA (HNHc domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C1_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.190e-44 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 Query: 1 MLTLQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQVIYQEK 222 MLTLQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQVIYQEK Sbjct: 1 MLTLQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQVIYQEK 74
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: C5WI97_STRDG (Putative endodeoxyribonuclease n=5 Tax=root TaxID=1 RepID=C5WI97_STRDG) HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7 Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 Query: 22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192 +GY A +Y+DN +H+L AE F+ + ++K TVDHID NRKNN + NLR AT Sbjct: 36 NGYLMADLYKDNKSEKVPIHRLVAEAFIP-NPENKATVDHIDGNRKNNSIDNLRWAT 91
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: F0YNE8_AURAN (AP2/ERF domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNE8_AURAN) HSP 1 Score: 53.1 bits (126), Expect = 7.740e-7 Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 1 Query: 16 DASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQVIYQEK 222 D GY + ++ + V+ VH+L A F++ +TD+K VDHID +R NN++SNLR ATK E Q K Sbjct: 33 DKDGYLQVNLSKSGVRKTVRVHRLVALAFIE-NTDNKPFVDHIDRDRTNNNISNLRWATKSENQANQTK 100
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: C5WGV2_STRDG (Putative endodeoxyribonuclease n=1 Tax=Streptococcus dysgalactiae subsp. equisimilis (strain GGS_124) TaxID=486410 RepID=C5WGV2_STRDG) HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6 Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 1 Query: 10 LQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192 + +GY +Y++N +H+L AE F+Q + ++K TVDHID NR+NN +SNLR AT Sbjct: 32 INKGNGYLIVDLYQNNRAEKVPIHRLVAEAFIQ-NPENKATVDHIDGNRRNNSISNLRWAT 91
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: U2VYH7_STRPY (HNHc domain-containing protein n=6 Tax=root TaxID=1 RepID=U2VYH7_STRPY) HSP 1 Score: 51.2 bits (121), Expect = 5.410e-6 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 Query: 22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192 +GY +Y+DN +H+L AE F+ + ++K TVDHID +RKNN ++NLR AT Sbjct: 36 NGYLIVDLYKDNKSEKVPIHRLVAEAFIP-NLENKATVDHIDGDRKNNSINNLRWAT 91
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: A0A847D594_9LACT (HNH endonuclease n=1 Tax=Trichococcus flocculiformis TaxID=82803 RepID=A0A847D594_9LACT) HSP 1 Score: 51.2 bits (121), Expect = 5.410e-6 Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 1 Query: 7 TLQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQ 204 TL +GY +Y+ N + VH+L AE F+ + ++K TVDHID NR NN + NLR AT EQ Sbjct: 32 TLNKRNGYLVLDLYQGNKREKVPVHRLVAEAFIP-NPENKLTVDHIDGNRDNNSIGNLRWATYGEQ 96
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: UPI000E3EB696 (HNH endonuclease n=1 Tax=Streptococcus sp. LQJ-218 TaxID=2283190 RepID=UPI000E3EB696) HSP 1 Score: 50.8 bits (120), Expect = 7.630e-6 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 Query: 22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192 +GY +Y++N +H+L AE F+ + ++K TVDHID NRKNN ++NLR AT Sbjct: 36 NGYLIVDLYKNNKSEKVPIHRLVAETFIP-NPENKLTVDHIDGNRKNNSINNLRWAT 91
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: A0A3S6QAE1_9CAUD (HNH endonuclease n=1 Tax=Lactobacillus phage Lpa804 TaxID=2059850 RepID=A0A3S6QAE1_9CAUD) HSP 1 Score: 50.1 bits (118), Expect = 1.390e-5 Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 Query: 4 LTLQDASG-YWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQ 204 + LQD +G Y ++Y++ V VH+ A F+ + D K+TVDHID N+ NN VSNLR A K EQ Sbjct: 54 ILLQDTTGRYHMVTLYKNGVAKNVTVHRQVAIAFID-NPDSKETVDHIDRNKDNNRVSNLRWANKLEQ 120
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: UPI00064324AB (HNH endonuclease n=1 Tax=Enterococcus cecorum TaxID=44008 RepID=UPI00064324AB) HSP 1 Score: 50.1 bits (118), Expect = 1.470e-5 Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1 Query: 22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192 + Y +Y +N +H+L AE F+ + ++K TVDHID NR+NND+SNLR AT Sbjct: 36 NNYLMVDLYENNQPKKVPIHRLIAEAFIP-NPENKATVDHIDGNRQNNDISNLRWAT 91
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Match: UPI002005EB74 (HNH endonuclease n=2 Tax=Lactobacillales TaxID=186826 RepID=UPI002005EB74) HSP 1 Score: 50.1 bits (118), Expect = 1.470e-5 Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1 Query: 22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192 +GY +Y++N +H+L AE F+ + + K TVDHID +RKNN +SNLR AT Sbjct: 36 NGYLMVDLYQNNKSEKVPIHRLVAEAFIP-NPEKKATVDHIDGDRKNNSISNLRWAT 91 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|157431 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_80 ID=mRNA_80|Name=jgi.p|Trimin1|157431|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1206bp|location=Sequence derived from alignment at Contig_3:448085..449290+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGTGCGCGTTCTCGTCGGTGAGCGCGTTCTCCGCTGTGTTGAACTGback to top protein sequence of jgi.p|Trimin1|157431 >Trimin1|157431|e_gw1.3.442.1 ID=Trimin1|157431|e_gw1.3.442.1|Name=jgi.p|Trimin1|157431|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=402bp MACAFSSVSAFSAVLNWAPSAEACLIQYGLGTGGRFTTAAEVAGGACKFTback to top mRNA from alignment at Contig_3:448085..449290+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_80 ID=mRNA_80|Name=jgi.p|Trimin1|157431|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1206bp|location=Sequence derived from alignment at Contig_3:448085..449290+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:448085..449290+ >mRNA_80 ID=mRNA_80|Name=jgi.p|Trimin1|157431|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1206bp|location=Sequence derived from alignment at Contig_3:448085..449290+ (Tribonema minus UTEX_B_3156 )back to top |