mRNA_7987 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: A0A835YH08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH08_9STRA) HSP 1 Score: 578 bits (1489), Expect = 6.050e-206 Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 1
Query: 1 MTAGDASGKKKQGVSGAGGNGSRQAHTGSADLTASSSSPRELNADEPTKIPEISDPEMSLTEDERLSLWEQLCSLEPAMQRALEAEDFSTAELLRDRISLLKAQDPYFALRESFETSLARDDYYSAAKCKLQLDRLGPPAALLERVSRGYNDVEMGPSVRAAVEAAQSALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVYSTRSEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILPASFQQ 1086
MTAGDASGKKKQGVSGAGGNGSRQAHTGSADLTASSSSPRELNADEPTKIPEISDPEMSLTEDERLSLWEQLCSLEPAMQRALEAEDFSTAELLRDRISLLKAQDPYFALRESFETSLARDDYYSAAKCKLQLDRLGPPAALLERVSRGYNDVEMGPSVRAAVEAAQSALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVYSTRSEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILPASFQQ
Sbjct: 1 MTAGDASGKKKQGVSGAGGNGSRQAHTGSADLTASSSSPRELNADEPTKIPEISDPEMSLTEDERLSLWEQLCSLEPAMQRALEAEDFSTAELLRDRISLLKAQDPYFALRESFETSLARDDYYSAAKCKLQLDRLGPPAALLERVSRGYNDVEMGPSVRAAVEAAQSALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVYSTRSEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILPASFQQ 362
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: A0A835ZBY5_9STRA (ApaG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY5_9STRA) HSP 1 Score: 356 bits (913), Expect = 6.390e-119 Identity = 221/318 (69.50%), Postives = 255/318 (80.19%), Query Frame = 1
Query: 124 LNADEPTKIPEISDPEMSLTEDERLSLWEQLCSLEPAMQRALEAEDFSTAELLRDRISLLKAQDPYFALRESFETSLARDDYYSAAKCKLQLDRLGPPAALLERVSRGYNDVEMGPSVRAAVEAAQSALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVYSTRSEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILPAS 1077
LN DEP ++PEI PE+S+T +ER+ LWE++C+ EP +Q A+E +DF TAE LR+RI+ LKAQDPYFALRE+ +++LAR+DYYSAAK KLQLD+LGPP +LE V+ G V+M P++ AV AAQ XXXXXXXXXXXXXXXXXXXXXXXXXXX VYSTRSE THGVRV VRAQYFPEQSDPA+ QFVFVYRVRVTN SRATVQLAARRW IRT +AKTG+TA QEV+GPGVVGQQPVLEPGQSFEYSSACPV + ++RVL RMEGAFTMVTGAVGERGFEAKI+PF+LILP S
Sbjct: 27 LNGDEPIQLPEIVAPELSMTAEERVVLWEEICASEPRLQLAIEEQDFGTAEQLRNRITALKAQDPYFALREAIDSALAREDYYSAAKFKLQLDKLGPPQTILESVANGSRRVDMSPTINQAVSAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----VYSTRSETETHGVRVEVRAQYFPEQSDPAKAQFVFVYRVRVTNASRATVQLAARRWHIRTANAKTGKTAVQEVKGPGVVGQQPVLEPGQSFEYSSACPVFQRPRD--------------SVRVLARMEGAFTMVTGAVGERGFEAKIDPFYLILPES 326
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: H6WBA4_VAULI (ApaG domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA4_VAULI) HSP 1 Score: 238 bits (606), Expect = 1.460e-72 Identity = 140/321 (43.61%), Postives = 191/321 (59.50%), Query Frame = 1
Query: 112 SPRELNA-DEPTKIPEISDPEMSLTEDERLSLWEQLCSLEPAMQRALEAEDFSTAELLRDRISLLKAQDPYFALRESFETSLARDDYYSAAKCKLQLDRLGPPAALLERVSRGYNDVEMGPSVRAAVEAAQSALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVYSTRSEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILP 1071
SP +L A D P K+PEI PEM +T ERLSLWEQ+ LEP ++ A+E+ + AELL+ +IS LKA +PYF L E + +L + D+ AAK KLQ+D++G P L+ V +V+ +V+ AV +A + IVYS +S T+ V V V +QYF EQS+P + +++F+YRV +TN S TVQL +R+W IRT++ T +T QEV GPGVVGQQP+LEPGQ FEY+SACP+ + +RVLGRMEG + MVTG+ G+ F+AKI PF+LILP
Sbjct: 25 SPEKLIAYDTPIKLPEIEVPEMKMTSVERLSLWEQINVLEPELKNAVESGEKDYAELLKSKISDLKASEPYFTLHEKMKMALEKSDFSGAAKYKLQMDKIGVPKEFLDGVKNKTRNVDGSETVKQAVTSALMS-------KEASEAANQTEVQNSGTFVSEDGEQIVYSAKSMTSTNRVDVEVVSQYFREQSNPTKHRYIFLYRVAITNNSPFTVQLVSRKWQIRTINPNTNKTEVQEVSGPGVVGQQPILEPGQIFEYNSACPITQKPKDN--------------IRVLGRMEGCYLMVTGSNGQHYFQAKINPFYLILP 324
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: D7FX50_ECTSI (ApaG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX50_ECTSI) HSP 1 Score: 182 bits (462), Expect = 7.580e-50 Identity = 112/310 (36.13%), Postives = 169/310 (54.52%), Query Frame = 1
Query: 145 KIPEISDPEMSLTEDERLSLWEQLCSLEPAMQRALEAEDFSTAELLRDRISLLKAQDPYFALRESFETSLARDDYYSAAKCKLQLDRLG-PPAALLERVSRGYNDVEMGPSVRAAVEAAQSALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVYSTRSEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILP 1071
++P + PEM ++E+ER LW + E + + AE R R ++ +DPY AL++ + ++ +++ A+ +LQ+ ++G PP A ++ + G + SA+A YS++S T+G+RV VR+QY+PEQS+P + Q++FVY+V++TN+S TVQL +R W I+ ++A A Q V+GPGVVGQQPVLEPGQSFEYSSACP+ +VLGRM+G++ +V GAVGE FEAKI+PF+LILP
Sbjct: 147 QLPTVEVPEM-MSEEERTRLWMGVSRAELQAVKLERQGETEEAEKFRQRAKEMRYEDPYTALQDELDEAIKNEEFVKIARLRLQMTKIGVPPNAEMQARAEGKDP---------------SAVAEETMKRMPGMSRGSEKSSRSGRRSDGSTETDGYSSKSVTTTNGIRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSSQTVQLVSRTWEIKAIEATE---APQLVKGPGVVGQQPVLEPGQSFEYSSACPIT--------------CAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILP 423
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: A0A7S0MN03_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MN03_9CRYP) HSP 1 Score: 145 bits (367), Expect = 4.390e-37 Identity = 102/321 (31.78%), Postives = 156/321 (48.60%), Query Frame = 1
Query: 109 SSPRELNADEPTKIPEISDPEMSLTEDERLSLWEQLCSLEPAMQRALEAEDFSTAELLRDRISLLKAQDPYFALRESFETSLARDDYYSAAKCKLQLDRLGPPAALLERVSRGYNDVEMGPSVRAAVEAAQSALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVYSTRSEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILP 1071
S+ R+ +A + P I + EMS +++R++LW ++ +E +Q A+++E++S A +RDRI LK +DPY A ++ E S+A + Y AA+ + +++ +G P + S V G S + S S+ T GVRV + Y PEQS P+ +F+F Y + + N T QL +R W IRT A G T +EV G GVVG+QPVLEPG++F Y+SACP+ R LG MEG++ MV G +G+ F ++ PF +LP
Sbjct: 64 SAERDPSAQQTGSGPVIGEVEMS--KEDRITLWAEVEEMETKLQEAIDSEEYSQAATIRDRIKSLKLRDPYAAAKDYMERSIAEEKYEEAARWRNKMNEVGEPPQKPGKGSSSVPYVGEGASPTGGSDGVSS---------------------------------------SDITTLGVRVQATSFYIPEQSSPSDGRFIFGYNITIFNGGSKTCQLVSRNWQIRT--APLGLT--EEVSGSGVVGRQPVLEPGEAFMYTSACPLAVDAEYLARLPPH---------RSLGSMEGSYLMVAGPLGQEVFAVRVAPFGFVLP 330
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: A0A7S4PNH5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PNH5_GUITH) HSP 1 Score: 133 bits (334), Expect = 4.750e-32 Identity = 99/308 (32.14%), Postives = 140/308 (45.45%), Query Frame = 1
Query: 172 MSLTEDERLSLWEQLCSLEPAMQRALEAEDFSTAELLRDRISLLKAQDPYFALRESFETSLARDDYYSAAKCKLQLDRLGPPAALLERVSRGYNDVEMGPSVRAAVEAAQSALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVYSTRSEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTL----DAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILPASFQ 1083
M L+EDER LWE++ L+ M A+ E++S A LRD I+ LK+ DPY ++ +G P L ++ + ++A + ALA + S+ VT GVR+ Y P+ S P+ +F+F Y V +TN + T QL +R WLI+T D+KT Q V G GV+G+QPVL P +SF YSS CP+ RVLG MEG++ MVTGAVG+ GF+A I+PF+ ILP +
Sbjct: 103 MCLSEDERRLLWEKIEDLDSEMNVAVSEENYSRAAELRDEIARLKSTDPYSNAEXXXXXXXXXXXXXXXXXXXKKMKEVGKPPVLHKKEKK--------------LQALELALATPITQPADS---------------------LGIKANSDTVTRGVRIQTVGFYLPDPSSPSDGRFMFGYNVTITNLNNETCQLLSRTWLIKTRVTPSDSKT-----QVVSGSGVIGRQPVLGPNESFTYSSLCPLSLDESYLRNLPQD---------RVLGSMEGSYLMVTGAVGQTGFQAIIDPFYFILPVDVE 361
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: A0A1I2H6N1_9GAMM (Protein ApaG n=1 Tax=Fontimonas thermophila TaxID=1076937 RepID=A0A1I2H6N1_9GAMM) HSP 1 Score: 117 bits (292), Expect = 1.780e-28 Identity = 66/150 (44.00%), Postives = 86/150 (57.33%), Query Frame = 1
Query: 622 SEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILP 1071
SE +T GVR+ VR +Y PEQSDPA Q++F Y + + NE TVQL +R W+I G +EVRGPGVVG QPVL+PG+ F+Y+SACP+ +G M G F M+ A GE GF+A+I PF L +P
Sbjct: 2 SETLTRGVRIIVRPRYVPEQSDPAAGQYLFAYHITIRNEGEDTVQLLSRHWVI-----TNGEGRIEEVRGPGVVGYQPVLKPGEEFQYTSACPLDTP---------------------VGTMHGEFQMILPATGE-GFDARINPFRLAVP 124
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: A0A7V8XSG4_9BACT (Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V8XSG4_9BACT) HSP 1 Score: 114 bits (285), Expect = 2.040e-27 Identity = 68/150 (45.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query: 622 SEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILP 1071
SEAVT GVRV V +Q+ PE+S+P+R Q+ F+Y + + NE TVQL R W+I G A +EVRGPGVVG+QP+L+PG+SFEY+S CP+ G MEG + MVT GER F+AK+ PF L P
Sbjct: 6 SEAVTRGVRVQVESQFDPERSEPSRNQWFFLYSITIANEGPDTVQLLTRHWII-----TDGTGAVEEVRGPGVVGKQPILKPGESFEYTSGCPLATA---------------------FGLMEGTYQMVTEG-GER-FDAKVAPFTLSEP 127
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: A0A1F2TEQ0_9BACT (Protein ApaG n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 TaxID=1797191 RepID=A0A1F2TEQ0_9BACT) HSP 1 Score: 114 bits (284), Expect = 2.690e-27 Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query: 622 SEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILP 1071
SEA+T GVRV V+++Y PE+SDPA Q+ F+Y + + NE ATVQL R W++ G +E+RGPGVVG+QP+L+PG+SFEY+S CP+ G MEG + M+T GER F+AK+ PF L P
Sbjct: 4 SEAITRGVRVKVQSEYAPERSDPANNQWFFLYTITIANEGTATVQLLTRHWIV-----TDGAGHIEEIRGPGVVGEQPILKPGESFEYTSGCPLETP---------------------FGMMEGTYQMITEG-GER-FDAKVAPFTLSEP 125
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Match: A0A7W1PC87_9BACT (Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1PC87_9BACT) HSP 1 Score: 112 bits (279), Expect = 1.440e-26 Identity = 67/150 (44.67%), Postives = 88/150 (58.67%), Query Frame = 1
Query: 622 SEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILP 1071
SEAVT GV V V ++Y PE+S+P R ++ F+Y VR++NE VQL R W+I G +EVRGPGVVG+QP+L+PG+SFEY+S CP+ G MEG + MVTG+ GER F+AK+ PF L P
Sbjct: 4 SEAVTRGVHVYVESEYAPERSEPTRNEWFFLYTVRISNEGAEVVQLLTRHWVI-----TDGTGHVEEVRGPGVVGKQPILKPGESFEYTSGCPLSTP---------------------FGVMEGTYQMVTGS-GER-FDAKVAPFTLSEP 125 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351604 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7987 ID=mRNA_7987|Name=jgi.p|Trimin1|351604|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1089bp|location=Sequence derived from alignment at Contig_94:405579..407698- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACTGCTGGCGATGCGAGCGGGAAGAAAAAGCAGGGCGTCAGCGGCGCback to top protein sequence of jgi.p|Trimin1|351604 >Trimin1|351604|estExt_Genemark1.C_Ctg_940076 ID=Trimin1|351604|estExt_Genemark1.C_Ctg_940076|Name=jgi.p|Trimin1|351604|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=363bp MTAGDASGKKKQGVSGAGGNGSRQAHTGSADLTASSSSPRELNADEPTKIback to top mRNA from alignment at Contig_94:405579..407698- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7987 ID=mRNA_7987|Name=jgi.p|Trimin1|351604|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2120bp|location=Sequence derived from alignment at Contig_94:405579..407698- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_94:405579..407698- >mRNA_7987 ID=mRNA_7987|Name=jgi.p|Trimin1|351604|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1089bp|location=Sequence derived from alignment at Contig_94:405579..407698- (Tribonema minus UTEX_B_3156 )back to top |