mRNA_7984 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351602
Unique NamemRNA_7984
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351602 vs. uniprot
Match: A0A836C8D4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D4_9STRA)

HSP 1 Score: 471 bits (1211), Expect = 7.820e-165
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 2 
Query:   41 MCIMRRDKARGRWRQPRHHSRKSDPSAPQAPAATAKDDMFMYAPDAPRGAVVGVAALVLSVMAAFSFANHSGAGAKDGSYGGAAPSTREPSPARDDVEAGGGSXXXXXXXXXXGAPQRKRVSWHERVSVRYVEALDAAQIAAPELLLDGIVAEIARVTGDDGVLAAASHLAAAKREMGARIGRFSVGHGHSVDGHEKVWDIIALDQRLACLQEDLDERVSKGLPAQRGSSDAFRRCARLKAHYRATRTRMGADXXXXXXXXXXXXXXXXXXXXXXXXXXREYAHSFA 901
            MCIMRRDKARGRWRQPRHHSRKSDPSAPQAPAATAKDDMFMYAPDAPRGAVVGVAALVLSVMAAFSFANHSGAGAKDGSYGGAAPSTREPSPARDDVEAGGGSXXXXXXXXXXGAPQRKRVSWHERVSVRYVEALDAAQIAAPELLLDGIVAEIARVTGDDGVLAAASHLAAAKREMGARIGRFSVGHGHSVDGHEKVWDIIALDQRLACLQEDLDERVSKGLPAQRGSSDAFRRCARLKAHYRATRTRMGADXXXXXXXXXXXXXXXXXXXXXXXXXXREYAHSFA
Sbjct:    1 MCIMRRDKARGRWRQPRHHSRKSDPSAPQAPAATAKDDMFMYAPDAPRGAVVGVAALVLSVMAAFSFANHSGAGAKDGSYGGAAPSTREPSPARDDVEAGGGSXXXXXXXXXXGAPQRKRVSWHERVSVRYVEALDAAQIAAPELLLDGIVAEIARVTGDDGVLAAASHLAAAKREMGARIGRFSVGHGHSVDGHEKVWDIIALDQRLACLQEDLDERVSKGLPAQRGSSDAFRRCARLKAHYRATRTRMGADXXXXXXXXXXXXXXXXXXXXXXXXXXREYAHSFA 287
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351602 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C8D4_9STRA7.820e-165100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:395337..397898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351602|estExt_Genemark1.C_Ctg_940074
Hectar predicted targeting categorysignal anchor
TranscriptId351924
TrackFilteredModels1
ProteinId351602
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351602gene_7984Tribonema minus UTEX_B_3156 geneContig_94 395337..397898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351602Trimin1|351602|estExt_Genemark1.C_Ctg_940074Tribonema minus UTEX_B_3156 polypeptideContig_94 395521..397858 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7984_3exon_7984_3Tribonema minus UTEX_B_3156 exonContig_94 395337..395793 -
exon_7984_2exon_7984_2Tribonema minus UTEX_B_3156 exonContig_94 396398..396938 -
exon_7984_1exon_7984_1Tribonema minus UTEX_B_3156 exonContig_94 397809..397898 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7984UTR3_7984Tribonema minus UTEX_B_3156 three_prime_UTRContig_94 395337..395520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7984CDS_7984Tribonema minus UTEX_B_3156 CDSContig_94 397809..397858 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7984UTR5_7984Tribonema minus UTEX_B_3156 five_prime_UTRContig_94 397859..397898 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7984 ID=mRNA_7984|Name=jgi.p|Trimin1|351602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1088bp|location=Sequence derived from alignment at Contig_94:395337..397898- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCCCGCGTGTGAGCCTGCGCCCTTGGCGTAGCAAGCCAGATGTGTATCA
TGAGGCGCGACAAGGCGAGAGGTCGCTGGCGGCAGCCCAGACACCACTCC
AGGAAATCCGACCCAAGCGCCCCGCAGGCCCCTGCAGCGACCGCCAAGGA
CGACATGTTCATGTACGCGCCCGACGCGCCGCGCGGCGCCGTCGTGGGCG
TGGCAGCGCTCGTCCTGAGCGTCATGGCAGCCTTCTCATTCGCCAATCAC
AGCGGCGCCGGAGCTAAGGACGGCAGCTACGGCGGCGCGGCGCCGAGCAC
CCGCGAGCCATCGCCGGCGCGCGATGACGTTGAGGCCGGCGGCGGCAGCG
GCGGCAGCAGCGGCGGCGGCAGCGGCAGCGGCGCGCCGCAGCGCAAGCGC
GTCAGCTGGCACGAGCGCGTGTCTGTGCGCTACGTGGAGGCGCTCGACGC
GGCGCAGATCGCGGCGCCGGAGCTGCTGCTCGACGGCATCGTCGCGGAGA
TCGCGCGCGTGACGGGGGACGATGGCGTGCTCGCCGCCGCGAGTCACCTC
GCCGCGGCGAAGCGCGAGATGGGCGCGCGCATCGGCAGGTTCTCCGTCGG
CCACGGGCACAGCGTGGACGGGCACGAGAAGGTCTGGGACATCATCGCGC
TCGACCAGCGCCTCGCGTGCCTGCAGGAGGACCTGGACGAGCGCGTGAGC
AAGGGCCTGCCCGCGCAGCGCGGCAGCTCCGACGCGTTCCGCCGCTGCGC
GCGCCTCAAGGCGCACTACCGCGCGACGCGCACGCGCATGGGCGCCGACG
CCGGCGGCGGCGGCGCGGACGGCGGCGGCGGCGACGCTGACGCCAACCTC
AATGTTGAAGATGACGAGGACGAGGACCGCGAGTACGCGCACAGCTTTGC
GTGAGTGTCGCCGCCGCTGCTGTCGTAACTGTCCGCAGCGCTGGCAGAGG
CAGTTGCGTGCGTCGGTGATCACTGGAGCCGTGCGCGGTTAATGAACACT
GGCTCGCTGCAAGTGCAAATGCACCAGCGGCGCAGCGCGGTGGAACAAAT
CACGCAGCATTGGGGCGAATGTGGGGACCAGACGGGAT
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protein sequence of jgi.p|Trimin1|351602

>Trimin1|351602|estExt_Genemark1.C_Ctg_940074 ID=Trimin1|351602|estExt_Genemark1.C_Ctg_940074|Name=jgi.p|Trimin1|351602|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=288bp
MCIMRRDKARGRWRQPRHHSRKSDPSAPQAPAATAKDDMFMYAPDAPRGA
VVGVAALVLSVMAAFSFANHSGAGAKDGSYGGAAPSTREPSPARDDVEAG
GGSGGSSGGGSGSGAPQRKRVSWHERVSVRYVEALDAAQIAAPELLLDGI
VAEIARVTGDDGVLAAASHLAAAKREMGARIGRFSVGHGHSVDGHEKVWD
IIALDQRLACLQEDLDERVSKGLPAQRGSSDAFRRCARLKAHYRATRTRM
GADAGGGGADGGGGDADANLNVEDDEDEDREYAHSFA*
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mRNA from alignment at Contig_94:395337..397898-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7984 ID=mRNA_7984|Name=jgi.p|Trimin1|351602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2562bp|location=Sequence derived from alignment at Contig_94:395337..397898- (Tribonema minus UTEX_B_3156 )
CTCCCGCGTGTGAGCCTGCGCCCTTGGCGTAGCAAGCCAGATGTGTATCA
TGAGGCGCGACAAGGCGAGAGGTCGCTGGCGGCAGCCCAGGTAGGGCGTC
CTACTGCAACAACAAGCGCCTCAATGTTCTCTCTATGGTGCTGCTAGGCG
GCCCTGCTTATGATGTATGCCTGAGCATGGTTCACATAAGCTGTTCTGGT
ATTATCAGTGACGGCAGCCCCTCTGCCGCTGACGGTGCTGCATGAAGAAG
CCACGTGCCCTCATATATGTGCATCATAGTGCTGTCCACAGTGTGCACAT
GACTGACGCAATACTGATCATTTATAAAGCATTAGTGCATGCAGTGTGGT
ATGACATGCGTCCAACAAACGCAACAGCTCATGTTGCGCATGGTGGCGTC
GGCATCGCACACGTATGGCAGTTACTCGAGGGCCCAGAATCTCTCCTTGC
TTGCTAATTGTGAAATGCATGGTGCGTTTCACATCATGCTTGCACAGATA
AGCCTTGCGACAGATCAGCTTTGCGAACGAAGTTGGCTCGGCTTAAAGTG
AAAGGGGCGTAGTACTCGATTTCAGTTCAGGCCACGACGCCCATTCCTTC
GCAACGTACCCGCTCATGGATCAACAAGAAGATGGCTGGCGGTCAAGGCC
GACGTTGCACAGTATCAGTCATATGCAGTGCTGATCAGCACGTCCTTCTC
GGCTACGGCCATCGCTCACCAGTCGCAGCAGTGGCACAGGCGCCTTCCGC
AGACCACCGCGGCGCCACGCGAAGGCTTGCAAGGCATGGAACCATCCCTT
CCCCCCATGCGGCCATGCAGTGGCCATGCGCTGCGCGCGCGCCCTGTCGT
ATCTCAAGCCCAATGACTCACTAAGTGACTCACCTGATGTCTCGCCTCAC
GACTCGCCTCAGCGCACACCCCTCACAGACGCTCTGCCACCGTCGTCACC
GCCGCCGCAGACACCACTCCAGGAAATCCGACCCAAGCGCCCCGCAGGCC
CCTGCAGCGACCGCCAAGGACGACATGTTCATGTACGCGCCCGACGCGCC
GCGCGGCGCCGTCGTGGGCGTGGCAGCGCTCGTCCTGAGCGTCATGGCAG
CCTTCTCATTCGCCAATCACAGCGGCGCCGGAGCTAAGGACGGCAGCTAC
GGCGGCGCGGCGCCGAGCACCCGCGAGCCATCGCCGGCGCGCGATGACGT
TGAGGCCGGCGGCGGCAGCGGCGGCAGCAGCGGCGGCGGCAGCGGCAGCG
GCGCGCCGCAGCGCAAGCGCGTCAGCTGGCACGAGCGCGTGTCTGTGCGC
TACGTGGAGGCGCTCGACGCGGCGCAGATCGCGGCGCCGGAGCTGCTGCT
CGACGGCATCGTCGCGGAGATCGCGCGCGTGACGGGGGACGATGGCGTGC
TCGCCGCCGCGAGTCACCTCGCCGCGGCGAAGCGCGAGATGGGCGCGCGC
ATCGGCAGGTTCTCCGTCGGCCACGGGCACAGCGTGGACGGGCACGAGAA
GGTACATTGGTGACTGACTGCTAGCGGTTGAGGTGACGGCAGACCGCGTA
TGGCAGCGATAATTCTCGTTGTCCTTCTCTAGTGCGCTCGTGAATCGGTC
GGGACCACATTGGACGTGAGAGCAGCTTCTGTTTCCATCGCACAGGAGCT
GCGGTGATTTTGTGGTCTCTGGGGGCGTCGTCATGCCAACACTGCGCAAG
TAGAAAGGCTGCCTCCGCTGCTGCGCAGCCATGTGCTGTGATGGGATCGT
AATTGTGGCAGCTGGCTCTCTTCTTGCCAGCACTGCATACTCAGGACGCA
AACACTTTTCTCGTGTGCATGGGGCTCATTTTCTCCCCTCAGCCTGCGGC
AGCGTGAACTTCACCAGGGGCCGGCACTGGTCGCTCGCCCTGGTGTCTGT
GCAGCTGGCACTTGAATTTTCGGTCCATCGCTGCAGCTGCAGTCCCTTGG
ACACAATGTCGCCATTGCATCGCCAAGTCCACCAACGTCCCGCAGGCGAC
CTCTACCGCGTGCGCGCCGCGGCGCATATCATTGCCATCTCACCACCCCA
ATCCCTGCAAACAAACTTCAACCTCAAATTCAACTTTAACCCCCCCCCCC
CCCAGGTCTGGGACATCATCGCGCTCGACCAGCGCCTCGCGTGCCTGCAG
GAGGACCTGGACGAGCGCGTGAGCAAGGGCCTGCCCGCGCAGCGCGGCAG
CTCCGACGCGTTCCGCCGCTGCGCGCGCCTCAAGGCGCACTACCGCGCGA
CGCGCACGCGCATGGGCGCCGACGCCGGCGGCGGCGGCGCGGACGGCGGC
GGCGGCGACGCTGACGCCAACCTCAATGTTGAAGATGACGAGGACGAGGA
CCGCGAGTACGCGCACAGCTTTGCGTGAGTGTCGCCGCCGCTGCTGTCGT
AACTGTCCGCAGCGCTGGCAGAGGCAGTTGCGTGCGTCGGTGATCACTGG
AGCCGTGCGCGGTTAATGAACACTGGCTCGCTGCAAGTGCAAATGCACCA
GCGGCGCAGCGCGGTGGAACAAATCACGCAGCATTGGGGCGAATGTGGGG
ACCAGACGGGAT
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Coding sequence (CDS) from alignment at Contig_94:395337..397898-

>mRNA_7984 ID=mRNA_7984|Name=jgi.p|Trimin1|351602|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=864bp|location=Sequence derived from alignment at Contig_94:395337..397898- (Tribonema minus UTEX_B_3156 )
ATGTGTATCATGAGGCGCGACAAGGCGAGAGGTCGCTGGCGGCAGCCCAG
ACACCACTCCAGGAAATCCGACCCAAGCGCCCCGCAGGCCCCTGCAGCGA
CCGCCAAGGACGACATGTTCATGTACGCGCCCGACGCGCCGCGCGGCGCC
GTCGTGGGCGTGGCAGCGCTCGTCCTGAGCGTCATGGCAGCCTTCTCATT
CGCCAATCACAGCGGCGCCGGAGCTAAGGACGGCAGCTACGGCGGCGCGG
CGCCGAGCACCCGCGAGCCATCGCCGGCGCGCGATGACGTTGAGGCCGGC
GGCGGCAGCGGCGGCAGCAGCGGCGGCGGCAGCGGCAGCGGCGCGCCGCA
GCGCAAGCGCGTCAGCTGGCACGAGCGCGTGTCTGTGCGCTACGTGGAGG
CGCTCGACGCGGCGCAGATCGCGGCGCCGGAGCTGCTGCTCGACGGCATC
GTCGCGGAGATCGCGCGCGTGACGGGGGACGATGGCGTGCTCGCCGCCGC
GAGTCACCTCGCCGCGGCGAAGCGCGAGATGGGCGCGCGCATCGGCAGGT
TCTCCGTCGGCCACGGGCACAGCGTGGACGGGCACGAGAAGGTCTGGGAC
ATCATCGCGCTCGACCAGCGCCTCGCGTGCCTGCAGGAGGACCTGGACGA
GCGCGTGAGCAAGGGCCTGCCCGCGCAGCGCGGCAGCTCCGACGCGTTCC
GCCGCTGCGCGCGCCTCAAGGCGCACTACCGCGCGACGCGCACGCGCATG
GGCGCCGACGCCGGCGGCGGCGGCGCGGACGGCGGCGGCGGCGACGCTGA
CGCCAACCTCAATGTTGAAGATGACGAGGACGAGGACCGCGAGTACGCGC
ACAGCTTTGCGTGA
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