mRNA_7941 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A835YGQ7_9STRA (Ribosomal protein L32e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGQ7_9STRA) HSP 1 Score: 268 bits (685), Expect = 1.880e-90 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 Query: 19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA Sbjct: 1 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 136
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: D8LTG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTG6_ECTSI) HSP 1 Score: 219 bits (559), Expect = 3.000e-71 Identity = 107/136 (78.68%), Postives = 124/136 (91.18%), Query Frame = 1 Query: 19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426 M +PL K VVKKRTKKFARHQ++RF+RI+NSSWR+PKGIDGRVRR+FKG +PMPN+GYGS+K+TRN+LPNGFYKFLVHNVK+LELL+MHNRKYAAEIAHNVS+RKRKEIVERA QL I+VTNA A+L EEDA Sbjct: 1 MGGVQPLNKVNVVKKRTKKFARHQTDRFMRIKNSSWRKPKGIDGRVRRRFKGCLPMPNVGYGSDKRTRNILPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 136
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A6S9KJY2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KJY2_HETAK) HSP 1 Score: 208 bits (529), Expect = 1.110e-66 Identity = 105/135 (77.78%), Postives = 117/135 (86.67%), Query Frame = 1 Query: 19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEED 423 MA PL KP +VKKRTKKFARHQS++F+RI SSWR+PKGID RVRR+FKG IPMP IGYGSNKKTRNVLPNGF KFLV+NV +LELLMMHNRKY AEIAHNVSA+KRK+IV RA QL I+VTNANARL +ED Sbjct: 1 MAKITPLSKPKIVKKRTKKFARHQSDQFMRIGKSSWRKPKGIDSRVRRRFKGTIPMPKIGYGSNKKTRNVLPNGFLKFLVNNVAELELLMMHNRKYCAEIAHNVSAKKRKDIVTRAEQLGIRVTNANARLEAQED 135
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A7S2XAB1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XAB1_9EUKA) HSP 1 Score: 205 bits (522), Expect = 7.690e-66 Identity = 101/119 (84.87%), Postives = 110/119 (92.44%), Query Frame = 1 Query: 67 TKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEED 423 TKKFARHQS+RF RI +SSWRRPKGID RVRRKFKGAIPM N+GYGSNKKTRN+LPNGFYKFLVHNVK+LELLMMHNRKY AE+AH VS++KRKEIVERA QL IKVTNANA+LR EED Sbjct: 1 TKKFARHQSDRFKRIADSSWRRPKGIDSRVRRKFKGAIPMANVGYGSNKKTRNLLPNGFYKFLVHNVKELELLMMHNRKYCAEVAHAVSSKKRKEIVERADQLGIKVTNANAKLRAEED 119
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A7S2B874_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B874_9STRA) HSP 1 Score: 202 bits (513), Expect = 5.650e-64 Identity = 102/132 (77.27%), Postives = 116/132 (87.88%), Query Frame = 1 Query: 34 PLPKPA-VVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426 PL KP +VKKRTKKFARH SNRF+RIENSSWR+PKGID VRR+FKG IPM IGYGS+KKTRN++PNGFYKF V NV LE+LMMHNRKY AEIAHNVS +KRKEIVERA+QL IKV+NANA+LR++EDA Sbjct: 24 PLVKPKKIVKKRTKKFARHFSNRFMRIENSSWRKPKGIDSSVRRRFKGTIPMAKIGYGSDKKTRNLMPNGFYKFAVSNVDQLEMLMMHNRKYCAEIAHNVSTKKRKEIVERAAQLNIKVSNANAKLRSDEDA 155
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A7S2SH78_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH78_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.490e-63 Identity = 98/131 (74.81%), Postives = 113/131 (86.26%), Query Frame = 1 Query: 34 PLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426 PL KP VVKKRTKKF RH SNRF+RI +SWR+P GID +RR+FKG++P P +GYGS+K+TRN+LPNGFYKFLV NV+DLELLMMHNRKY AEIAHNVS KR+EIV RA+QL IKVTNANA+LR EEDA Sbjct: 6 PLTKPKVVKKRTKKFVRHFSNRFMRISRTSWRKPMGIDSSMRRRFKGSLPQPKVGYGSDKRTRNLLPNGFYKFLVSNVEDLELLMMHNRKYCAEIAHNVSTLKRQEIVTRANQLAIKVTNANAKLREEEDA 136
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: B7G3G9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3G9_PHATC) HSP 1 Score: 196 bits (499), Expect = 4.110e-62 Identity = 97/136 (71.32%), Postives = 118/136 (86.76%), Query Frame = 1 Query: 19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426 MA P PL K +VKKRTKKFARHQS+ F+RI NSSWR+PKGIDGRVRR+FKG+IPMP+IGYGS+K+TRNV P+GF +++NV +LE+LMMHNR YAA +AH+VS+R R+EIVERA QL I+VTNANA+LR EEDA Sbjct: 1 MAGPTPLNKKTIVKKRTKKFARHQSDLFLRIANSSWRKPKGIDGRVRRRFKGSIPMPSIGYGSDKQTRNVHPHGFKTVVINNVSELEMLMMHNRTYAATVAHSVSSRIRREIVERAEQLAIRVTNANAKLRAEEDA 136
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: F0XYA0_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XYA0_AURAN) HSP 1 Score: 195 bits (496), Expect = 1.140e-61 Identity = 96/126 (76.19%), Postives = 112/126 (88.89%), Query Frame = 1 Query: 43 KPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEE 420 KP +VKKRTKKFARH SNRF++I NSSWR+ GID RVRR+FKG IPMP IGYGS+KKTR+++P+GFYKF+V+NVK+LELLMMHNR YAAEIAH+VS +KRK I+ERA QL IKVTNANARLR EE Sbjct: 9 KPTIVKKRTKKFARHFSNRFMKIRNSSWRKIHGIDSRVRRRFKGTIPMPKIGYGSDKKTRHMMPSGFYKFVVNNVKELELLMMHNRTYAAEIAHSVSGQKRKAIIERAEQLNIKVTNANARLRAEE 134
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A1E7FQF0_9STRA (Ribosomal protein L32e n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FQF0_9STRA) HSP 1 Score: 195 bits (495), Expect = 1.670e-61 Identity = 95/136 (69.85%), Postives = 117/136 (86.03%), Query Frame = 1 Query: 19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426 MA P P+ K +VKKRTKKFARHQS++F+RI +SSWR+PKGIDGRVRR+FKGA+PMP+IGYGS+K TRN+ PNGF +V+NV +LE+LMMHNR YAA +AH+VS+R RKEIV+RA QL I+VTNA A+LR EEDA Sbjct: 1 MAGPTPINKKTIVKKRTKKFARHQSDQFMRIRDSSWRKPKGIDGRVRRRFKGAVPMPSIGYGSDKATRNICPNGFKSVVVNNVSELEMLMMHNRTYAATVAHSVSSRIRKEIVQRAEQLAIRVTNAAAKLRAEEDA 136
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A6U0EGG2_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U0EGG2_9STRA) HSP 1 Score: 194 bits (493), Expect = 3.370e-61 Identity = 96/136 (70.59%), Postives = 117/136 (86.03%), Query Frame = 1 Query: 19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426 MA P PL K +VKKRTKKFARHQS++FIRI +SSWR+PKGIDGRVRR+FKGA+PMP++GYGS+KKTRN+ P+GF +V NV +LE+LMMHNR YAA IAH+VS+R R++IVERA QL +KVTNA A+LR EEDA Sbjct: 1 MANPTPLNKKTIVKKRTKKFARHQSDQFIRIRDSSWRKPKGIDGRVRRRFKGALPMPSVGYGSDKKTRNIHPHGFKTVVVSNVSELEMLMMHNRTYAATIAHSVSSRVRRQIVERAEQLSVKVTNAAAKLRAEEDA 136 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7941 ID=mRNA_7941|Name=jgi.p|Trimin1|100003|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=485bp|location=Sequence derived from alignment at Contig_94:148846..150322+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCTTTGTAGAGTGCTATCATGGCGGCTCCCAAGCCTCTGCCCAAGCCCGCback to top protein sequence of jgi.p|Trimin1|100003 >Trimin1|100003|CE100002_3409 ID=Trimin1|100003|CE100002_3409|Name=jgi.p|Trimin1|100003|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFback to top mRNA from alignment at Contig_94:148846..150322+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7941 ID=mRNA_7941|Name=jgi.p|Trimin1|100003|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1477bp|location=Sequence derived from alignment at Contig_94:148846..150322+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_94:148846..150322+ >mRNA_7941 ID=mRNA_7941|Name=jgi.p|Trimin1|100003|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=411bp|location=Sequence derived from alignment at Contig_94:148846..150322+ (Tribonema minus UTEX_B_3156 )back to top |