mRNA_7941 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|100003
Unique NamemRNA_7941
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A835YGQ7_9STRA (Ribosomal protein L32e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGQ7_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.880e-90
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1
Query:   19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426
            MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA
Sbjct:    1 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 136          
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: D8LTG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTG6_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 3.000e-71
Identity = 107/136 (78.68%), Postives = 124/136 (91.18%), Query Frame = 1
Query:   19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426
            M   +PL K  VVKKRTKKFARHQ++RF+RI+NSSWR+PKGIDGRVRR+FKG +PMPN+GYGS+K+TRN+LPNGFYKFLVHNVK+LELL+MHNRKYAAEIAHNVS+RKRKEIVERA QL I+VTNA A+L  EEDA
Sbjct:    1 MGGVQPLNKVNVVKKRTKKFARHQTDRFMRIKNSSWRKPKGIDGRVRRRFKGCLPMPNVGYGSDKRTRNILPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 136          
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A6S9KJY2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KJY2_HETAK)

HSP 1 Score: 208 bits (529), Expect = 1.110e-66
Identity = 105/135 (77.78%), Postives = 117/135 (86.67%), Query Frame = 1
Query:   19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEED 423
            MA   PL KP +VKKRTKKFARHQS++F+RI  SSWR+PKGID RVRR+FKG IPMP IGYGSNKKTRNVLPNGF KFLV+NV +LELLMMHNRKY AEIAHNVSA+KRK+IV RA QL I+VTNANARL  +ED
Sbjct:    1 MAKITPLSKPKIVKKRTKKFARHQSDQFMRIGKSSWRKPKGIDSRVRRRFKGTIPMPKIGYGSNKKTRNVLPNGFLKFLVNNVAELELLMMHNRKYCAEIAHNVSAKKRKDIVTRAEQLGIRVTNANARLEAQED 135          
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A7S2XAB1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XAB1_9EUKA)

HSP 1 Score: 205 bits (522), Expect = 7.690e-66
Identity = 101/119 (84.87%), Postives = 110/119 (92.44%), Query Frame = 1
Query:   67 TKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEED 423
            TKKFARHQS+RF RI +SSWRRPKGID RVRRKFKGAIPM N+GYGSNKKTRN+LPNGFYKFLVHNVK+LELLMMHNRKY AE+AH VS++KRKEIVERA QL IKVTNANA+LR EED
Sbjct:    1 TKKFARHQSDRFKRIADSSWRRPKGIDSRVRRKFKGAIPMANVGYGSNKKTRNLLPNGFYKFLVHNVKELELLMMHNRKYCAEVAHAVSSKKRKEIVERADQLGIKVTNANAKLRAEED 119          
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A7S2B874_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B874_9STRA)

HSP 1 Score: 202 bits (513), Expect = 5.650e-64
Identity = 102/132 (77.27%), Postives = 116/132 (87.88%), Query Frame = 1
Query:   34 PLPKPA-VVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426
            PL KP  +VKKRTKKFARH SNRF+RIENSSWR+PKGID  VRR+FKG IPM  IGYGS+KKTRN++PNGFYKF V NV  LE+LMMHNRKY AEIAHNVS +KRKEIVERA+QL IKV+NANA+LR++EDA
Sbjct:   24 PLVKPKKIVKKRTKKFARHFSNRFMRIENSSWRKPKGIDSSVRRRFKGTIPMAKIGYGSDKKTRNLMPNGFYKFAVSNVDQLEMLMMHNRKYCAEIAHNVSTKKRKEIVERAAQLNIKVSNANAKLRSDEDA 155          
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A7S2SH78_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH78_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.490e-63
Identity = 98/131 (74.81%), Postives = 113/131 (86.26%), Query Frame = 1
Query:   34 PLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426
            PL KP VVKKRTKKF RH SNRF+RI  +SWR+P GID  +RR+FKG++P P +GYGS+K+TRN+LPNGFYKFLV NV+DLELLMMHNRKY AEIAHNVS  KR+EIV RA+QL IKVTNANA+LR EEDA
Sbjct:    6 PLTKPKVVKKRTKKFVRHFSNRFMRISRTSWRKPMGIDSSMRRRFKGSLPQPKVGYGSDKRTRNLLPNGFYKFLVSNVEDLELLMMHNRKYCAEIAHNVSTLKRQEIVTRANQLAIKVTNANAKLREEEDA 136          
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: B7G3G9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3G9_PHATC)

HSP 1 Score: 196 bits (499), Expect = 4.110e-62
Identity = 97/136 (71.32%), Postives = 118/136 (86.76%), Query Frame = 1
Query:   19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426
            MA P PL K  +VKKRTKKFARHQS+ F+RI NSSWR+PKGIDGRVRR+FKG+IPMP+IGYGS+K+TRNV P+GF   +++NV +LE+LMMHNR YAA +AH+VS+R R+EIVERA QL I+VTNANA+LR EEDA
Sbjct:    1 MAGPTPLNKKTIVKKRTKKFARHQSDLFLRIANSSWRKPKGIDGRVRRRFKGSIPMPSIGYGSDKQTRNVHPHGFKTVVINNVSELEMLMMHNRTYAATVAHSVSSRIRREIVERAEQLAIRVTNANAKLRAEEDA 136          
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: F0XYA0_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XYA0_AURAN)

HSP 1 Score: 195 bits (496), Expect = 1.140e-61
Identity = 96/126 (76.19%), Postives = 112/126 (88.89%), Query Frame = 1
Query:   43 KPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEE 420
            KP +VKKRTKKFARH SNRF++I NSSWR+  GID RVRR+FKG IPMP IGYGS+KKTR+++P+GFYKF+V+NVK+LELLMMHNR YAAEIAH+VS +KRK I+ERA QL IKVTNANARLR EE
Sbjct:    9 KPTIVKKRTKKFARHFSNRFMKIRNSSWRKIHGIDSRVRRRFKGTIPMPKIGYGSDKKTRHMMPSGFYKFVVNNVKELELLMMHNRTYAAEIAHSVSGQKRKAIIERAEQLNIKVTNANARLRAEE 134          
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A1E7FQF0_9STRA (Ribosomal protein L32e n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FQF0_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.670e-61
Identity = 95/136 (69.85%), Postives = 117/136 (86.03%), Query Frame = 1
Query:   19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426
            MA P P+ K  +VKKRTKKFARHQS++F+RI +SSWR+PKGIDGRVRR+FKGA+PMP+IGYGS+K TRN+ PNGF   +V+NV +LE+LMMHNR YAA +AH+VS+R RKEIV+RA QL I+VTNA A+LR EEDA
Sbjct:    1 MAGPTPINKKTIVKKRTKKFARHQSDQFMRIRDSSWRKPKGIDGRVRRRFKGAVPMPSIGYGSDKATRNICPNGFKSVVVNNVSELEMLMMHNRTYAATVAHSVSSRIRKEIVQRAEQLAIRVTNAAAKLRAEEDA 136          
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Match: A0A6U0EGG2_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U0EGG2_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.370e-61
Identity = 96/136 (70.59%), Postives = 117/136 (86.03%), Query Frame = 1
Query:   19 MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKFKGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEIAHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA 426
            MA P PL K  +VKKRTKKFARHQS++FIRI +SSWR+PKGIDGRVRR+FKGA+PMP++GYGS+KKTRN+ P+GF   +V NV +LE+LMMHNR YAA IAH+VS+R R++IVERA QL +KVTNA A+LR EEDA
Sbjct:    1 MANPTPLNKKTIVKKRTKKFARHQSDQFIRIRDSSWRKPKGIDGRVRRRFKGALPMPSVGYGSDKKTRNIHPHGFKTVVVSNVSELEMLMMHNRTYAATIAHSVSSRVRRQIVERAEQLSVKVTNAAAKLRAEEDA 136          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|100003 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGQ7_9STRA1.880e-90100.00Ribosomal protein L32e n=1 Tax=Tribonema minus Tax... [more]
D8LTG6_ECTSI3.000e-7178.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S9KJY2_HETAK1.110e-6677.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XAB1_9EUKA7.690e-6684.87Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S2B874_9STRA5.650e-6477.27Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S2SH78_9STRA2.490e-6374.81Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
B7G3G9_PHATC4.110e-6271.32Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
F0XYA0_AURAN1.140e-6176.19Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
A0A1E7FQF0_9STRA1.670e-6169.85Ribosomal protein L32e n=3 Tax=Bacillariaceae TaxI... [more]
A0A6U0EGG2_9STRA3.370e-6170.59Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:148846..150322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|100003|CE100002_3409
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L32e
Ec32 orthologEc-02_005540.1
TranscriptId100325
TrackFilteredModels1
ProteinId100003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|100003gene_7941Tribonema minus UTEX_B_3156 geneContig_94 148846..150322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|100003Trimin1|100003|CE100002_3409Tribonema minus UTEX_B_3156 polypeptideContig_94 148864..150266 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7941_1exon_7941_1Tribonema minus UTEX_B_3156 exonContig_94 148846..149047 +
exon_7941_2exon_7941_2Tribonema minus UTEX_B_3156 exonContig_94 149374..149470 +
exon_7941_3exon_7941_3Tribonema minus UTEX_B_3156 exonContig_94 150137..150322 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7941UTR5_7941Tribonema minus UTEX_B_3156 five_prime_UTRContig_94 148846..148863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7941CDS_7941Tribonema minus UTEX_B_3156 CDSContig_94 148864..149047 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7941UTR3_7941Tribonema minus UTEX_B_3156 three_prime_UTRContig_94 150267..150322 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7941 ID=mRNA_7941|Name=jgi.p|Trimin1|100003|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=485bp|location=Sequence derived from alignment at Contig_94:148846..150322+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCTTTGTAGAGTGCTATCATGGCGGCTCCCAAGCCTCTGCCCAAGCCCGC
TGTGGTGAAGAAGCGGACGAAGAAGTTCGCTCGCCACCAGAGCAACCGCT
TCATCCGCATCGAGAACAGCTCATGGCGCAGGCCCAAAGGCATCGACGGC
AGGGTGCGCCGCAAGTTTAAGGGCGCCATCCCTATGCCCAACATCGGCTA
CGGGTCAAACAAGAAGACCCGCAACGTGCTGCCCAACGGCTTCTACAAGT
TCCTGGTGCACAACGTTAAGGACCTGGAGCTGCTTATGATGCACAACAGG
AAGTACGCCGCGGAGATTGCGCACAACGTGTCCGCGCGCAAGCGCAAGGA
GATTGTGGAGCGCGCATCACAGCTGTTCATCAAGGTCACCAACGCAAACG
CCAGGCTGCGCACGGAGGAGGACGCATAGGCGTTGCTCGCTGCTGCAGTG
GAGCACTGGGGATCTTGATGTTTTAGGGGGCGGAG
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protein sequence of jgi.p|Trimin1|100003

>Trimin1|100003|CE100002_3409 ID=Trimin1|100003|CE100002_3409|Name=jgi.p|Trimin1|100003|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp
MAAPKPLPKPAVVKKRTKKFARHQSNRFIRIENSSWRRPKGIDGRVRRKF
KGAIPMPNIGYGSNKKTRNVLPNGFYKFLVHNVKDLELLMMHNRKYAAEI
AHNVSARKRKEIVERASQLFIKVTNANARLRTEEDA*
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mRNA from alignment at Contig_94:148846..150322+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7941 ID=mRNA_7941|Name=jgi.p|Trimin1|100003|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1477bp|location=Sequence derived from alignment at Contig_94:148846..150322+ (Tribonema minus UTEX_B_3156 )
CCTTTGTAGAGTGCTATCATGGCGGCTCCCAAGCCTCTGCCCAAGCCCGC TGTGGTGAAGAAGCGGACGAAGAAGTTCGCTCGCCACCAGAGCAACCGCT TCATCCGCATCGAGAACAGCTCATGGCGCAGGCCCAAAGGCATCGACGGC AGGGTGCGCCGCAAGTTTAAGGGCGCCATCCCTATGCCCAACATCGGCTA CGGTGAGTCCGAGGCAACAGCGAAAGAGCAGCAGTCCTTATCACCTGCCA TTTGCGCCTAAGCCATGGCGAGTTGTTGTTGCAACACCTGTCTGGTGTTT GAGCTGCGGTGCCGAAATCTAGCTCGGTGATGCTGGTGGGTGTTTTGCAA AACCAAAGACATAGCTCAAGCTGATGTCAGCACGCACGTAAACAAGATGG CGGATCGCAGATCGCCACCTATGATATAGTGCTGCTGCTTCGCAGCCAAC AGCATATAGCGCACACACCGTTGCTCTCAATGTTCAGATCTGTAATGCTT CAATTCCATGGTGTCTTCACCTCAACAGGGTCAAACAAGAAGACCCGCAA CGTGCTGCCCAACGGCTTCTACAAGTTCCTGGTGCACAACGTTAAGGACC TGGAGCTGCTTATGATGCACAACAGGTACGGTTGGCTGAAGTGCGATGTT GATAAAGGAGCTGTGCAACGCTTTATACTTGCCTGTGAGGCCTGTTCCTG GGACGGCACGGCTCGTCGGGCCGCATTGCTGATGATTGGATCAAGTCTGT GCAGCATTTTTTGTCAGTCACTGTACTGGCCATGCTGGTCATTTGGCTGC ATCAGGCAGCGGCCTGTGCAACAGCTGTTACCCGATTGTGTTGCAGATGT GGTACTTGGCAACGACTGCATCTGAAGCTGCGCAGAAACCATCATGTTTA GAAGCCAGCTCGAGCTTCCCTTGACACTGAATGCAGCGAACGGCAGATAT TCGACAGCCATTATGGTCCTGGCTAAGTGCATGTCGCTGCTACACACAAC TGCTACACACGACGCACATGCCTGTGATGCACACATGTGACGCTGAGCTA TCAGCATGGCAGCGCCGTCGTAGCCACGCCACGCGCTGGCTTCGTCAAAC TTTTGCTGCTGCAGCAGCAACGTGCTCGTCACGAACTTCTGATTCGCGTT CTTTGCGGCGTCGCAGCAGGCACGCCGCAGAATCGCGCACACGCGTCCGC ACGCAAGCTCAGCTTCTGATTTCCATTCAAGCTCTGATTTGCATTCAACT TCTGCTTTGCATTGTGATTTGCGTTCTGCTCGGCGCTGCAGGAAGTACGC CGCGGAGATTGCGCACAACGTGTCCGCGCGCAAGCGCAAGGAGATTGTGG AGCGCGCATCACAGCTGTTCATCAAGGTCACCAACGCAAACGCCAGGCTG CGCACGGAGGAGGACGCATAGGCGTTGCTCGCTGCTGCAGTGGAGCACTG GGGATCTTGATGTTTTAGGGGGCGGAG
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Coding sequence (CDS) from alignment at Contig_94:148846..150322+

>mRNA_7941 ID=mRNA_7941|Name=jgi.p|Trimin1|100003|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=411bp|location=Sequence derived from alignment at Contig_94:148846..150322+ (Tribonema minus UTEX_B_3156 )
ATGGCGGCTCCCAAGCCTCTGCCCAAGCCCGCTGTGGTGAAGAAGCGGAC
GAAGAAGTTCGCTCGCCACCAGAGCAACCGCTTCATCCGCATCGAGAACA
GCTCATGGCGCAGGCCCAAAGGCATCGACGGCAGGGTGCGCCGCAAGTTT
AAGGGCGCCATCCCTATGCCCAACATCGGCTACGGGTCAAACAAGAAGAC
CCGCAACGTGCTGCCCAACGGCTTCTACAAGTTCCTGGTGCACAACGTTA
AGGACCTGGAGCTGCTTATGATGCACAACAGGAAGTACGCCGCGGAGATT
GCGCACAACGTGTCCGCGCGCAAGCGCAAGGAGATTGTGGAGCGCGCATC
ACAGCTGTTCATCAAGGTCACCAACGCAAACGCCAGGCTGCGCACGGAGG
AGGACGCATAG
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