mRNA_7932 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: A0A836C806_9STRA (VPS9 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C806_9STRA) HSP 1 Score: 747 bits (1928), Expect = 1.690e-271 Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 1 Query: 1 PERRAALQAEARKTRVQWIEDARRISPDDAESEAREAIAGTCSDLARALPCALTLHDFLRVLGGDVPDAEVLSDILLPFALSEDGADSAKGDGPLPTHRPNRSSYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPTVAAAALRPQQHVAKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDARDAATALRLQSLSFVGFEHLDMAPLVSGAGASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRLGESR 1206 PERRAALQAEARKTRVQWIEDARRISPDDAESEAREAIAGTCSDLARALPCALTLHDFLRVLGGDVPDAEVLSDILLPFALSEDGADSAKGDGPLPTHRPNRSSYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPTVAAAALRPQQHVAKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDARDAATALRLQSLSFVGFEHLDMAPLVSGAGASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRLGESR Sbjct: 1 PERRAALQAEARKTRVQWIEDARRISPDDAESEAREAIAGTCSDLARALPCALTLHDFLRVLGGDVPDAEVLSDILLPFALSEDGADSAKGDGPLPTHRPNRSSYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPTVAAAALRPQQHVAKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDARDAATALRLQSLSFVGFEHLDMAPLVSGAGASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRLGESR 402
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: D8LL30_ECTSI (VPS9 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL30_ECTSI) HSP 1 Score: 218 bits (555), Expect = 4.340e-61 Identity = 168/447 (37.58%), Postives = 224/447 (50.11%), Query Frame = 1 Query: 7 RRAALQAEARKTRVQWIEDARRISPDDAESEARE------AIAGTCSD--LARALPCALTLHDFLRVLGGDVPDAEV--LSDILLPFALSE-DGADSAKGDGPLPTHRPNRSSYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPT------VAAAALRPQQHV-------------------------------AKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDARDAATALRLQSLSFVGFEHLDMAPLVSGAGASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVL---RRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRL 1194 RR L AEAR+ RV W+E+AR I DD AR+ A +G ++ L R P A+ HDFL L GD ++ +S IL PF + + D D D P+P +R +D LDKL+H A+EVV +L+QFV F + PP P P ++ + V A+R + +HAFL R MRE LWR E+E QW DT ESLER+VM+K++D + LAAD RD++ + RL+SL F+ EHL + PLV L W+ A LL++ +R PGD L C++ C VA +L R A GA PGAD+ LPALI LVK NPP L S LE++Q+F P +L++ A Y LTQL SA+ FLE DA LS+ +FER L Sbjct: 27 RRTELLAEARRKRVAWVEEARGI--DDGVDGARKRREDEAAASGRKAEGELERLFPSAVKFHDFLTGLAGDRDESPAGDMSAILQPFMIEDVDIGD----DRPIPAYREGSVPFDVFLDKLRHPRAAEVVKSLQQFVAAF-RARVEAPPALASPGPRGATAGSSNAFVGVPVPAVRNGREADTSPNGSAGATANXXXXXXXXXSGVTAVTMSGMMHAFLGRVEAQMRESALWRRETEAQWEDTRESLERIVMHKVFDQAYGLAADPGRDSSISTRLRSLGFLTEEHLGVPPLVDAQ--EDGALTWADAEAQLLKMSRMRCPGDMLRCIVKCTRIVAGLLTGDRAAGGA----------------------LPGADDFLPALILLVKRANPPGLHSTLEFVQSFRDPSKLLS-EAGYVLTQLVSAVCFLEEVDASVLSIAHGDFERGL 441
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: A0A482RZ75_9ARCH (VPS9 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZ75_9ARCH) HSP 1 Score: 151 bits (381), Expect = 7.200e-38 Identity = 127/413 (30.75%), Postives = 207/413 (50.12%), Query Frame = 1 Query: 31 ARKTRVQWIEDARRISPDDAESEAREA-IAGTCSDLARALPCALTLHDFLRVLGGDVPDAEVLSDILLPFALSEDGADSAKGDGPLPTHRPNRSSYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPTVAAAAL-----RPQQHVAKIHA-----FLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDA-RDAATALRLQSLSFVGFEHLDMAPL------VSGAGASHAD--LDWSAPRAHLLR-LDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRLGESR 1206 ARK+R+ W+ R D E++ + IA + + + +LP A + L L V D ++ L + ED ++A + N SSYD L KL H A VV +++QFV + I R Q ++ S D+ + AA+L R + AKI A FL A MR ++LW +++ ++ E+ E+ + KL++ F + ++D ++ T R+ SLSF+ EHLD+ +S + ++H D L +P L+ L+ +SP DK+ C+ C ++A +LR L D+ PGADELLP +I +K NPP L S +++LQ + PE+L G Y LT SA++FL++ +A AL+++PEEF+R + +S+ Sbjct: 24 ARKSRLFWVLQGR----DGLENKLSPSPIASSKAASSSSLPAAHAIQQVLDYLTDAVGDGNLIDVESLVLGMEEDVDETALLEAYKHPDNTNLSSYDLFLKKLIHPHAGPVVKSMQQFVAQQIAKIRDQR-MKATASTMDNINNILKAASLGKQNERDSEESAKIWANNIFKFLDHVADLMRTNILWAADTDGEFQIARENSEKFIFIKLHNHIFGVDSEDYHQNQQTQERIASLSFISAEHLDIKSFRVANSFLSPSSSTHTDPLLPILSPAVKFLQDLESAKSPADKMQCIRKCSASIAQILRD-LRTDNN-------------------LPGADELLPTMILTLKLCNPPMLHSQIKFLQRYTRPEKLT-GEGGYLLTNFVSAVYFLDHVNAQALTIEPEEFDRAIAQSK 410
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: A0A7S2W9D2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9D2_9STRA) HSP 1 Score: 144 bits (362), Expect = 2.660e-34 Identity = 133/418 (31.82%), Postives = 195/418 (46.65%), Query Frame = 1 Query: 7 RRAALQAEARKTRVQWIEDARRISPDDAESEARE-------AIAGTCSDLARALPCALTLHDFLRVLGGDVPDAEVLSDILLPFALSEDGADSAKGDGPLPTH--RPNRSSYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPTVAAAALRPQQHVAKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDA-RDAATALRLQSLSFVGFEHLDMAPLVS------GAGASHADLD--WSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRLGESR 1206 R+ +L EAR+ R+ W+E AR S A+ A A + ALP + L FL D +AE+++D A + + D P+PTH P+ +SY LL+KLKH A+EVV +E+F+ Q Q S D+ST I AFL+R MRE LW E++ QW + S+E + KL+ V F + + +D RL+SL+F+ HLD+ L G ++ A D W L ++ P K+ V+ C ++A VL A+ + PGAD+ LPA+I +VK NP RL SNL ++QTFA RL++ A Y T L+SA+ FL++ DA AL++ EEFE + S+ Sbjct: 57 RKESLLIEARRKRISWVEAARDGSGLGADGHASHWHRVDPAAKMLESTKAGSALPSSPALVQFLADQL-DPTEAEIVAD-----------AHAVQSDIPIPTHDSMPDATSYQVLLEKLKHPSAAEVVKMMERFI--------DQMERQGVSSLDDAST---------------TISAFLERLHAQMRESPLWLSETDAQWDSSKVSVESFLFRKLHHVFFPSSPEAVEQDRDLERRLRSLAFIDAAHLDIKSLQQEYQSSMGQPSNEAREDEMWQESITCLRKMSAEYGPTAKIDQVVRCSKSIASVLTTAMRG---------------------KLPGADDFLPAMILVVKKANPSRLHSNLTFIQTFAPQHRLLS-EAGYIFTHLSSAVAFLQDVDANALTITSEEFEAGIQRSQ 417
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: A0A830HVP8_9CHLO (VPS9 domain-containing protein n=3 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HVP8_9CHLO) HSP 1 Score: 128 bits (321), Expect = 1.170e-29 Identity = 92/286 (32.17%), Postives = 140/286 (48.95%), Query Frame = 1 Query: 310 SYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPTVAAAALRPQQHVAKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDAR-DAATALRLQSLSFVGFEHLDMAPLVSGAGASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALS 1164 ++ + L+K++ AS++V+ ++ F+ F + TP A + R Q FL+ T R H+LWR S E+LE+ +M KLY +TF ++ DD R DAA A + Q+L+F+ EHLD+ P + W + L + D ++P DKL C L C ++++LR A E G+ PGAD+ P L+Y+V PPR+ SNLE++ F A RLV+ A Y LT L SA+HF+E + AL+ Sbjct: 29 TFASFLEKMRKPAASDLVSAIKHFIAAF-----------------HTGTPDPARDSRRLQD-------FLRTTEAAFRAHILWRNASADDLEAAGEALEKYIMTKLYPLTFAVSPDDTRRDAAIARKFQALAFLKPEHLDIPP------EHRVEASWLLAQKELCKCDSYKAPRDKLVCALNCCRIISNLLRVAA----EQGAP----------------PGADDFFPVLVYVVVRAAPPRIVSNLEFIARFRAENRLVS-EAEYFLTNLMSAVHFIETMRSEALT 263
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: C1MX54_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MX54_MICPC) HSP 1 Score: 123 bits (309), Expect = 2.260e-27 Identity = 95/297 (31.99%), Postives = 139/297 (46.80%), Query Frame = 1 Query: 310 SYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPTVAAAALRPQQHVAKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADD-ARDAATALRLQSL-SFVGFEHLDMAPLVSGAGASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALS-MDPEEFERR 1191 ++ + L+K++H ASE+V +++ F+ F + AA A A++ FL+ T + R H WRG S+ + + E LE+ +M KLY TF +A DD A D R+ +L SFV EHLD+ H+D WS R L +++ ++P DKL CVL V ++L G PGAD+ LPALIY+V +NP L SN ++ F RL A A+Y T L SA FL + DA A + ++ E F+ R Sbjct: 16 TFQSFLEKMRHPSASELVKSIKGFIASFDD----------------------AAVARDSDADGARVQEFLRETERAFRGHPAWRGASQEELDASGEGLEKYLMTKLYPKTFAVAPDDVAADDFLGARVAALASFVRPEHLDIPTRF------HSDASWSLARNELCKMNNFKAPRDKLVCVLNTCRIVNNLLNATHGPTSP--------------------PGADDFLPALIYVVLRSNPAALESNARFISRFRLESRL-ASEAAYFFTNLQSATRFLSSCDASAFTGLEKEAFDAR 263
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: A0A5P1FBU5_ASPOF (VPS9 domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FBU5_ASPOF) HSP 1 Score: 122 bits (305), Expect = 2.610e-27 Identity = 94/322 (29.19%), Postives = 144/322 (44.72%), Query Frame = 1 Query: 247 EDGADSAKGDGPLPTHRPNRSSYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPTVAAAALRPQQHVAKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDARDAATALRLQSL--SFVGFEHLDMAPLVSGAGASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRLGESR 1206 E+ + S+ PL H LD+++H AS+ V +++ F+ + LS + P P++ A + FL + R HMLW G SE + E LE+ VM KL++ F +D SL F+ E+LD+ P A + W + L +++ ++P DKL C+L C + ++L A ED PGAD+ LP LIY+ NPP+L SNL Y+Q + + RLV+ SY T S F+ N DA +LSMD EEF++++ +R Sbjct: 2 ENSSSSSNSSAPLAWH--------DFLDRMRHPSASDFVKSIKSFI---VSLSNKAPD---------------------PEKDSAAVQEFLAKMEGAFRAHMLWAGCSEEELESAGEGLEKYVMTKLFNRVFASLPEDVLSDEELFEKISLLQQFIRPENLDIKP------AFQNETSWLLAQKELQKINLYKAPRDKLICILNCCKVINNLLLNVSIASHED------------------PPGADDFLPVLIYVTIKANPPQLHSNLLYIQRYRSQSRLVS-EVSYYFTNFLSVESFIWNVDAASLSMDEEEFQKKMESAR 266
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: A0A4D9D3E4_9STRA (VPS9 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3E4_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.280e-26 Identity = 127/443 (28.67%), Postives = 195/443 (44.02%), Query Frame = 1 Query: 7 RRAALQAEARKTRVQWIEDARRISPDDAE-------------SEAREAIAGTCSD---LARALPCALTLHDFLRVLGGDVPDAEVLSD--ILLPFALSEDGAD------SAKGDGPLPTHRPNRS---SYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQP--PLQPPPSPHDSSTPTVAAAALRPQ-QHVAKIHAFLQRTAKTMREHMLWRGES------------EPQWADTVESLERLVMYKLYDVTFRLAADDA---RDAATALRLQSLSFVGFEHLDMAPLVSGAGASHA----DLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVL--RRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEF 1182 RR L EAR+ R+ W+++ + D E + + ++AG + LA LP A FL + G+ V D +L + ++DG A+ PLP + S SYD + L H ++E+V ++++FV FI+ ++ P + PPSP S+P RPQ +H +HAF+ + ++ +W G W + E LE+ ++ KL+ F A +A R+QSL+F+G EHL++ L+S + S A L++S AH ++P D +A +L C A+ L R GA PGADE LPA+I VK +NP L + +Q + P RL +Y T + SA+HFLE ADA L+M PE F Sbjct: 10 RRHDLLLEARRQRLSWLQNEDYVEMDVVEVFLAKQQEEQQQHGKEQGSLAGLFQEVPGLANVLPAAREYVGFLNEVAGEDDRDAVAYDPNVLQALSAAQDGETWWLEEAEAEPATPLPDESLDPSTPLSYDGFIRLLMHPGSAEIVKSMQRFVSAFIQSQERRKGLPARAPPSP---SSP-------RPQGEH---LHAFIDSLRGELCKNKVWSGRLTAGGGSRASGSWSAAWEEVREHLEKFLVIKLHRYLFTEAETQVLVKEEARWRARVQSLAFLGPEHLEVRSLLSSSSVSAALAPAILEFSRVPAH-------KAPADIMAGLLRCSQALTQALVSSRVAGAG---------------------LPGADEFLPAMILTVKESNPKNLRRAIHAVQRYRHPSRLQVAEPAYVFTNVLSAIHFLETADASQLNMTPESF 411
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: D8R0M8_SELML (VPS9 domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R0M8_SELML) HSP 1 Score: 119 bits (298), Expect = 5.110e-26 Identity = 88/303 (29.04%), Postives = 138/303 (45.54%), Query Frame = 1 Query: 304 RSSYDTLLDKLKHRLASEVVNNLEQFVFRFIELSRQQPPLQPPPSPHDSSTPTVAAAALRPQQHVAKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFR-LAADDARDAATALRLQSLS-FVGFEHLDMAPLVSGAGASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRLGESR 1206 + ++ L+++KH A+++V +++ F+ F+ SP D P A FL T R H LW G +E + + E LE+ VM K++ + L +D +D + ++ L F+ EHLD+ + W L +++ ++P DKL C+L C + ++L A PGA+E LPALIY+V NPP+L SNL++++ + RLVA ASY T L S F+E DA +LSMD EFE R+ +R Sbjct: 13 QQTFHDFLERMKHPSAADLVRSIKSFIVNFMS------------SPID------------PAMDSASAQDFLSTTEVAFRAHPLWAGATEEELENAAEGLEKYVMTKIFTRAYSPLPSDSLKDQELSDKISLLQHFIKPEHLDLPQSFQN------EASWLIAEKELQKINSYKAPRDKLVCILNCCRVINNLLLMAKSGTP---------------------PGAEEFLPALIYVVIKANPPQLHSNLQFIERYRHSSRLVA-EASYFYTSLVSVESFIEKLDAKSLSMDEAEFEERMQNAR 263
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Match: UPI001F5CEE48 (vacuolar protein sorting-associated protein 9A-like isoform X1 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CEE48) HSP 1 Score: 117 bits (292), Expect = 6.630e-26 Identity = 81/246 (32.93%), Postives = 124/246 (50.41%), Query Frame = 1 Query: 463 VAAAALRPQQHVAKIHAFLQRTAKTMREHMLWRGESEPQWADTVESLERLVMYKLYDVTFRLAADDAR-DAATALRLQSLS-FVGFEHLDMAPLVSGAGASHADLDWSAPRAHLLRLDGLRSPGDKLACVLACFDAVADVLRRALGADDEDGSSXXXXXXXXXXXXXXREPGADELLPALIYLVKSTNPPRLASNLEYLQTFAAPERLVAGRASYALTQLASALHFLENADAGALSMDPEEFERRL 1194 +A+ +L + A++ AF REH LW + + +E LE+ +M KL+D TF +A+DA DA + R+ L FV EHLD+ ++ H + W L +++ +SP +KL CV++C + ++L A ++D S GADE LP LIY+ NPPRL SNL+++Q F +LV+ Y LT L SA F+ N D +LSM+ EF+ + Sbjct: 36 LASLSLDAEVDGARVQAFYAAMEAAFREHPLWANATHQEIDHALEGLEKYIMTKLFDRTFAASAEDAAADAEVSERIGLLQRFVRPEHLDIPKVL------HNEASWLLAVKELQKINSFKSPREKLLCVMSCCQVINNLLLNASMSNDRTPS------------------GADEFLPILIYITIKANPPRLHSNLKFVQLFRRETKLVS-EVEYYLTNLISAKMFIVNVDGHSLSMEDNEFQMHM 256 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138834 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7932 ID=mRNA_7932|Name=jgi.p|Trimin1|138834|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1206bp|location=Sequence derived from alignment at Contig_94:109656..110903- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCAGAGAGACGTGCAGCTCTGCAGGCGGAGGCCCGCAAGACCCGCGTACAback to top protein sequence of jgi.p|Trimin1|138834 >Trimin1|138834|gw1.94.57.1 ID=Trimin1|138834|gw1.94.57.1|Name=jgi.p|Trimin1|138834|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=402bp PERRAALQAEARKTRVQWIEDARRISPDDAESEAREAIAGTCSDLARALPback to top mRNA from alignment at Contig_94:109656..110903- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7932 ID=mRNA_7932|Name=jgi.p|Trimin1|138834|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1248bp|location=Sequence derived from alignment at Contig_94:109656..110903- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_94:109656..110903- >mRNA_7932 ID=mRNA_7932|Name=jgi.p|Trimin1|138834|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1206bp|location=Sequence derived from alignment at Contig_94:109656..110903- (Tribonema minus UTEX_B_3156 )back to top |