mRNA_7885 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|165385
Unique Name	mRNA_7885
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|165385 vs. uniprot
Match: A0A835YVJ3_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.170e-12
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:    1 MLAASSGYVACVTALLEHGAAVTAVDRKGVTALILXXXXXXXXXXXXXXXXDAMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVTTADGYGVT 288
            MLAASSGYVACVTALLEHGAAVTAVDRKGVTALILXXXXXXXXXXXXXXXXDAMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVTTADGYGVT
Sbjct:    1 MLAASSGYVACVTALLEHGAAVTAVDRKGVTALILXXXXXXXXXXXXXXXXDAMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVTTADGYGVT 96

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|165385 vs. uniprot

BLAST of jgi.p|Trimin1|165385 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YVJ3_9STRA	2.170e-12	100.00	Ankyrin repeat-containing domain protein (Fragment...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_37	contig	Contig_37:832903..834357 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|165385\|e_gw1.37.80.1
Hectar predicted targeting category	other localisation
TranscriptId	165707
Track	FilteredModels1
ProteinId	165385

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|165385	gene_7885	Tribonema minus UTEX_B_3156	gene	Contig_37 832903..834357 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_7885_1	exon_7885_1	Tribonema minus UTEX_B_3156	exon	Contig_37 832903..834357 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_7885	CDS_7885	Tribonema minus UTEX_B_3156	CDS	Contig_37 832903..834357 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|165385	Trimin1\|165385\|e_gw1.37.80.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_37 832903..834357 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_37:832903..834357-
coding sequence from alignment at Contig_37:832903..834357-

spliced messenger RNA

>mRNA_7885 ID=mRNA_7885|Name=jgi.p|Trimin1|165385|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1455bp|location=Sequence derived from alignment at Contig_37:832903..834357- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCAGCGAGCAGCGGCTACGTCGCCTGCGTCACAGCACTTCTGGA
ACACGGCGCGGCGGTGACGGCAGTCGACAGGAAGGGTGTAACAGCGCTCA
TACTGGCAGCGAGCAACGGTCACGTCGACTGCATCACGGCACTGCTTCAA
CATGATGCGATGACGGCAGTTGCCGAGGAGGGGAGGTCGGCGCTCATGTT
CGCGGCGAGCAACGGCCACGTCGATTGCATCACGACTCTGCTTCAGCATG
GTGCGGATGTTACGACAGCCGACGGGTACGGGGTGACGGCACTCATGTTC
GCTGCGATGTCAGGCTACATCGACTGCATCACGGTGCTGCTGGCGCACGG
CGCGCCGGTGACGGCGGTCGATAAGGAGGGGAGAACGGTGCTCGTGACCG
CGGCGAGCTATGGCCATGTTGCCTGCGTCACAGCACTTCTGAAACACGGC
GCGGCGGTGACGGCAGTTGACAACAAGGGGGTGACGGTGCTCATGATGGC
GGCGGGTAACGGTCAGGTCGACTGCATCACCGCGCTGCTGGAACATGGCG
CAGTGGTGACGGCAGTTGACGAAGAGGGGGTGACGGCGCTCATGCTGGCA
GCGAGCGGCGGCTACGTCGCCTGCGTCACAGCACTTCTGGAACGCGGCGC
GTCGGTGACAGCAGTTGACGACAAGGGGGTGACGGCGCTCATAATGGCGG
CGGTCTACGGCTGTGTCGGCTGCATCACGGCGCTGATGGCACACGGTGCG
GCGGTGACGGCAGTCGACAGAGAGGGCGCAACAGCGCTCATACTGGCAGC
GAGGAACGGTCACGTCGACTGCATCACGGCACTGCTTGAACATGATGCGA
TGACGCAGGTAATGGCAGTTGCCAAGAAGGGGATGACGGCGCTCATGTTC
GTGGCGATAAAAGGCCACGTCGACTGCATCACGACTCTGCTTCAATATGG
TGCGGATGTTACGACAGCCAACAGGTACGGGACGACGGCTCTCATGGTCG
CTGCGAGCCAAGGCCACATCGACTGCATCACCGCGCTGCTGGCGCACGGC
GCGCCGGTGACGGCGGTCGATAAGGAGGGGAGGACGGCGCTGATAATCGC
GGCGGAGTGCGGCCGCGTGGGATGCCTCACGACTCTGCTGGCGCGCGGTG
CGCCGGTGACGGCGAGTGACAAGAAGGGGGTGACGGCTCTCATGTTCGCT
GCGAGCAAAGGCCACATCGACTGCATCACGGAGCTGCTGGCGCACGGCGC
GCCGGTGACGGCGGGTGACAAGAGGGGGTTGACTGCTCTCATGTTCGCTG
CGAGCCAAGGCCACGTCGACTGCATCACGGCGCTGCTCCAGCATGGCGCG
GATGCTACGGAATTCAATTGCAGGAGGCAAACCGCGGTCATGCTCGCGGC
ACTCGCGGGTCACGCCCACTGTGTCACGGCGCTGCTGGCACACGATGCGA
TGGTG

protein sequence of jgi.p|Trimin1|165385

>Trimin1|165385|e_gw1.37.80.1 ID=Trimin1|165385|e_gw1.37.80.1|Name=jgi.p|Trimin1|165385|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=485bp
MLAASSGYVACVTALLEHGAAVTAVDRKGVTALILAASNGHVDCITALLQ
HDAMTAVAEEGRSALMFAASNGHVDCITTLLQHGADVTTADGYGVTALMF
AAMSGYIDCITVLLAHGAPVTAVDKEGRTVLVTAASYGHVACVTALLKHG
AAVTAVDNKGVTVLMMAAGNGQVDCITALLEHGAVVTAVDEEGVTALMLA
ASGGYVACVTALLERGASVTAVDDKGVTALIMAAVYGCVGCITALMAHGA
AVTAVDREGATALILAARNGHVDCITALLEHDAMTQVMAVAKKGMTALMF
VAIKGHVDCITTLLQYGADVTTANRYGTTALMVAASQGHIDCITALLAHG
APVTAVDKEGRTALIIAAECGRVGCLTTLLARGAPVTASDKKGVTALMFA
ASKGHIDCITELLAHGAPVTAGDKRGLTALMFAASQGHVDCITALLQHGA
DATEFNCRRQTAVMLAALAGHAHCVTALLAHDAMV

mRNA from alignment at Contig_37:832903..834357-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7885 ID=mRNA_7885|Name=jgi.p|Trimin1|165385|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1455bp|location=Sequence derived from alignment at Contig_37:832903..834357- (Tribonema minus UTEX_B_3156 )
ATGCTGGCAGCGAGCAGCGGCTACGTCGCCTGCGTCACAGCACTTCTGGA
ACACGGCGCGGCGGTGACGGCAGTCGACAGGAAGGGTGTAACAGCGCTCA
TACTGGCAGCGAGCAACGGTCACGTCGACTGCATCACGGCACTGCTTCAA
CATGATGCGATGACGGCAGTTGCCGAGGAGGGGAGGTCGGCGCTCATGTT
CGCGGCGAGCAACGGCCACGTCGATTGCATCACGACTCTGCTTCAGCATG
GTGCGGATGTTACGACAGCCGACGGGTACGGGGTGACGGCACTCATGTTC
GCTGCGATGTCAGGCTACATCGACTGCATCACGGTGCTGCTGGCGCACGG
CGCGCCGGTGACGGCGGTCGATAAGGAGGGGAGAACGGTGCTCGTGACCG
CGGCGAGCTATGGCCATGTTGCCTGCGTCACAGCACTTCTGAAACACGGC
GCGGCGGTGACGGCAGTTGACAACAAGGGGGTGACGGTGCTCATGATGGC
GGCGGGTAACGGTCAGGTCGACTGCATCACCGCGCTGCTGGAACATGGCG
CAGTGGTGACGGCAGTTGACGAAGAGGGGGTGACGGCGCTCATGCTGGCA
GCGAGCGGCGGCTACGTCGCCTGCGTCACAGCACTTCTGGAACGCGGCGC
GTCGGTGACAGCAGTTGACGACAAGGGGGTGACGGCGCTCATAATGGCGG
CGGTCTACGGCTGTGTCGGCTGCATCACGGCGCTGATGGCACACGGTGCG
GCGGTGACGGCAGTCGACAGAGAGGGCGCAACAGCGCTCATACTGGCAGC
GAGGAACGGTCACGTCGACTGCATCACGGCACTGCTTGAACATGATGCGA
TGACGCAGGTAATGGCAGTTGCCAAGAAGGGGATGACGGCGCTCATGTTC
GTGGCGATAAAAGGCCACGTCGACTGCATCACGACTCTGCTTCAATATGG
TGCGGATGTTACGACAGCCAACAGGTACGGGACGACGGCTCTCATGGTCG
CTGCGAGCCAAGGCCACATCGACTGCATCACCGCGCTGCTGGCGCACGGC
GCGCCGGTGACGGCGGTCGATAAGGAGGGGAGGACGGCGCTGATAATCGC
GGCGGAGTGCGGCCGCGTGGGATGCCTCACGACTCTGCTGGCGCGCGGTG
CGCCGGTGACGGCGAGTGACAAGAAGGGGGTGACGGCTCTCATGTTCGCT
GCGAGCAAAGGCCACATCGACTGCATCACGGAGCTGCTGGCGCACGGCGC
GCCGGTGACGGCGGGTGACAAGAGGGGGTTGACTGCTCTCATGTTCGCTG
CGAGCCAAGGCCACGTCGACTGCATCACGGCGCTGCTCCAGCATGGCGCG
GATGCTACGGAATTCAATTGCAGGAGGCAAACCGCGGTCATGCTCGCGGC
ACTCGCGGGTCACGCCCACTGTGTCACGGCGCTGCTGGCACACGATGCGA
TGGTG

Coding sequence (CDS) from alignment at Contig_37:832903..834357-

>mRNA_7885 ID=mRNA_7885|Name=jgi.p|Trimin1|165385|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1455bp|location=Sequence derived from alignment at Contig_37:832903..834357- (Tribonema minus UTEX_B_3156 )
ATGCTGGCAGCGAGCAGCGGCTACGTCGCCTGCGTCACAGCACTTCTGGA
ACACGGCGCGGCGGTGACGGCAGTCGACAGGAAGGGTGTAACAGCGCTCA
TACTGGCAGCGAGCAACGGTCACGTCGACTGCATCACGGCACTGCTTCAA
CATGATGCGATGACGGCAGTTGCCGAGGAGGGGAGGTCGGCGCTCATGTT
CGCGGCGAGCAACGGCCACGTCGATTGCATCACGACTCTGCTTCAGCATG
GTGCGGATGTTACGACAGCCGACGGGTACGGGGTGACGGCACTCATGTTC
GCTGCGATGTCAGGCTACATCGACTGCATCACGGTGCTGCTGGCGCACGG
CGCGCCGGTGACGGCGGTCGATAAGGAGGGGAGAACGGTGCTCGTGACCG
CGGCGAGCTATGGCCATGTTGCCTGCGTCACAGCACTTCTGAAACACGGC
GCGGCGGTGACGGCAGTTGACAACAAGGGGGTGACGGTGCTCATGATGGC
GGCGGGTAACGGTCAGGTCGACTGCATCACCGCGCTGCTGGAACATGGCG
CAGTGGTGACGGCAGTTGACGAAGAGGGGGTGACGGCGCTCATGCTGGCA
GCGAGCGGCGGCTACGTCGCCTGCGTCACAGCACTTCTGGAACGCGGCGC
GTCGGTGACAGCAGTTGACGACAAGGGGGTGACGGCGCTCATAATGGCGG
CGGTCTACGGCTGTGTCGGCTGCATCACGGCGCTGATGGCACACGGTGCG
GCGGTGACGGCAGTCGACAGAGAGGGCGCAACAGCGCTCATACTGGCAGC
GAGGAACGGTCACGTCGACTGCATCACGGCACTGCTTGAACATGATGCGA
TGACGCAGGTAATGGCAGTTGCCAAGAAGGGGATGACGGCGCTCATGTTC
GTGGCGATAAAAGGCCACGTCGACTGCATCACGACTCTGCTTCAATATGG
TGCGGATGTTACGACAGCCAACAGGTACGGGACGACGGCTCTCATGGTCG
CTGCGAGCCAAGGCCACATCGACTGCATCACCGCGCTGCTGGCGCACGGC
GCGCCGGTGACGGCGGTCGATAAGGAGGGGAGGACGGCGCTGATAATCGC
GGCGGAGTGCGGCCGCGTGGGATGCCTCACGACTCTGCTGGCGCGCGGTG
CGCCGGTGACGGCGAGTGACAAGAAGGGGGTGACGGCTCTCATGTTCGCT
GCGAGCAAAGGCCACATCGACTGCATCACGGAGCTGCTGGCGCACGGCGC
GCCGGTGACGGCGGGTGACAAGAGGGGGTTGACTGCTCTCATGTTCGCTG
CGAGCCAAGGCCACGTCGACTGCATCACGGCGCTGCTCCAGCATGGCGCG
GATGCTACGGAATTCAATTGCAGGAGGCAAACCGCGGTCATGCTCGCGGC
ACTCGCGGGTCACGCCCACTGTGTCACGGCGCTGCTGGCACACGATGCGA
TGGTG