mRNA_7861 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|62088
Unique NamemRNA_7861
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: A0A835YX69_9STRA (Glutaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX69_9STRA)

HSP 1 Score: 529 bits (1363), Expect = 9.310e-188
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 2 
Query:   89 MAVQTQPSDAVQEHGKQHQEQLHVGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSEELPEVIVAAKKDNILVTAFHPELTADKRWHAYFLKMVREAQTKT 904
            MAVQTQPSDAVQEHGKQHQEQLHVGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSEELPEVIVAAKKDNILVTAFHPELTADKRWHAYFLKMVREAQTKT
Sbjct:    1 MAVQTQPSDAVQEHGKQHQEQLHVGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSEELPEVIVAAKKDNILVTAFHPELTADKRWHAYFLKMVREAQTKT 272
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: D7FWN1_ECTSI (Glutaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWN1_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 1.720e-88
Identity = 152/273 (55.68%), Postives = 186/273 (68.13%), Query Frame = 2 
Query:  158 VGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLL--GLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYL--------------------------TPSEELPEVIVAAKKDNILVTAFHPELTADKRWHAYFLKMVREA 892
            +G+LALQGAF EH++LL  LGA V EVRLP +F GLD IVLPGGESTAMALIGERWGVFP+L++WV+ GRPVWGTCAGMILLS+ ALMQK+GGQ+LVGGL+VEICRNYFG+Q SSFE P+DT+ L  G   ++  G+  + PYPAVFIRAPA+L  AG GV +L KVR+ PC+KA   ++A L    A                                         +  +E PEVIVA +K NI+ TAFHPELT D RWH YF+++V+EA
Sbjct:   23 IGILALQGAFAEHSSLLSKLGADVREVRLPHEFEGLDGIVLPGGESTAMALIGERWGVFPRLKQWVSEGRPVWGTCAGMILLSDHALMQKKGGQSLVGGLNVEICRNYFGAQTSSFEVPLDTSALETGSVGKKDGGSANKNPYPAVFIRAPAVLE-AGPGVDVLCKVRSRPCNKAVTVMKAQLKQEEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEKEAPEVIVAIRKGNIVGTAFHPELTNDSRWHEYFVRIVKEA 294
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: A0A7S2RJG7_9STRA (Glutaminase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJG7_9STRA)

HSP 1 Score: 249 bits (636), Expect = 1.690e-77
Identity = 136/255 (53.33%), Postives = 181/255 (70.98%), Query Frame = 2 
Query:  158 VGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSEELP----------EVIVAAKKDNILVTAFHPELTADKRWHAYFLKMVREA 892
            VGVLA+QG+F EH  +L +LG +  EVRLP D  GLD ++LPGGEST MA+IGE  GVFP LR ++ +G+PVWGTCAG+ILLSN AL QKEGGQALVGGLD+E+CRN+FGSQ+ S E  ++   +G+ ++  AG D +K + AVFIRAPAIL VA EGV +LA+V+A PCS A  +++AS + P    + + K+++    L+ ++E            +VIVA +K  IL TAFHPE T+D+RWH +FL MV  A
Sbjct:   17 VGVLAIQGSFAEHLEMLAALGTRTREVRLPEDLEGLDGLILPGGESTTMAIIGEPTGVFPALRSYIQSGKPVWGTCAGLILLSNTALFQKEGGQALVGGLDIEVCRNFFGSQVESCEMDME---VGVLEDFSAGMD-DKGHRAVFIRAPAILQVA-EGVDVLARVKAKPCSTALASMQASNSVPDEF-KPAVKKRKTSSDLSAAQEFGLGVAVDTEPWDVIVAVQKGTILGTAFHPEFTSDQRWHKHFLSMVNTA 265
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: A0A7S2FF77_9STRA (Glutaminase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FF77_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.370e-70
Identity = 124/248 (50.00%), Postives = 157/248 (63.31%), Query Frame = 2 
Query:  152 LHVGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSEELP-EVIVAAKKDNILVTAFHPELTADKRWHAYFLKMVREA 892
            L +GVLA+QG+F EH +++R+LG   TE+RLP +  G+  I+ PGGEST MA++GE  G+FP LR WV  G+PVWGTCAGMILLS+ A+ Q+EGGQALVGGLDVE+CRNYFGSQI S E  +          E  GT     + AVFIRAPAI+   G  V +LA+V A PC +A                     Q+L      SE  P +VIVAA+   +L TAFHPE T D+RWH  FL+MV ++
Sbjct:   19 LTIGVLAIQGSFSEHVDIVRALGFPCTEIRLPEELKGVHGIIFPGGESTTMAIVGESTGIFPALRNWVQAGKPVWGTCAGMILLSDSAIFQREGGQALVGGLDVEVCRNYFGSQIQSCEMDLSVQAFDEISSEAHGTQPAAKHSAVFIRAPAIMKC-GPSVEVLARVSAAPCRQAL--------------------QKLTEQGEVSEGGPRDVIVAARHGALLATAFHPEFTNDRRWHQLFLQMVTDS 245
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: K8YT50_NANGC (Glutaminase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YT50_NANGC)

HSP 1 Score: 231 bits (588), Expect = 4.270e-70
Identity = 138/277 (49.82%), Postives = 180/277 (64.98%), Query Frame = 2 
Query:  158 VGVLALQGAFEEHANLLRSLGAKVTEVRLPGDF-AGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEK-PYPAVFIRAPAILSVAGEGVSILAKVRALPCSKAR-----------------LALEASLNAP------AASPERSAKRQRLEPYLTPSEELP----EVIVAAKKDNILVTAFHPELTADKRWHAYFLKMV-REAQT 898
            +G+LALQGAFEEH  +++ LGA+  EVRLP D    LD +++PGGESTAMA++GER G+FP+L+ +V  G+P+WGTCAGMILLSN A+MQK GGQ L+GGLDVE+CRN+FGSQ+SSFE      LL L     AG+   + P  AVFIRAPAIL  AG GV +LA+V+A PC++AR                 L  E   +AP      AAS + +  R R     T  E       EV+VA ++ ++L TAFHPELT ++ WH YF+ M  ++AQT
Sbjct:   11 IGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKNLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFE-----VLLQLEGAAAAGSLGSRGPVSAVFIRAPAILE-AGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPSPLVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSMCSQQAQT 281
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: A0A1V9YX66_9STRA (Glutaminase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YX66_9STRA)

HSP 1 Score: 223 bits (568), Expect = 3.690e-68
Identity = 123/244 (50.41%), Postives = 158/244 (64.75%), Query Frame = 2 
Query:  158 VGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSE--ELPEVIVAAKKDNILVTAFHPELTADKRWHAYFLKMV 883
            +GVLALQGAFEEH ++L+++GA   +VRLP +  GLDA+V PGGESTA+A + ERWG+   L++WVA  +P+WGTCAGMILL+  A   KEGGQAL+GGLDVE+ RN+FG+QI SFEQ I             G D  KPY AVFIRAPAI+SV GE + +L+ +                NA                  TP++  +  +VIVAA+K+NILVTAFHPELT D RWH YF++ +
Sbjct:    4 IGVLALQGAFEEHVDMLKAVGADAIQVRLPSELEGLDALVFPGGESTAIAKVAERWGMIEPLKQWVADKKPIWGTCAGMILLAQSARHAKEGGQALIGGLDVEVSRNFFGAQIRSFEQHIQGP---------PGYDEAKPYNAVFIRAPAIVSV-GEEIEVLSSIH---------------NA------------------TPADGSDPTDVIVAARKNNILVTAFHPELTNDTRWHQYFVEAI 204
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: W4G4V9_9STRA (Glutaminase n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4V9_9STRA)

HSP 1 Score: 221 bits (562), Expect = 2.840e-67
Identity = 120/244 (49.18%), Postives = 158/244 (64.75%), Query Frame = 2 
Query:  158 VGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSE--ELPEVIVAAKKDNILVTAFHPELTADKRWHAYFLKMV 883
            +GVLALQGAFEEH ++L+ +GA   EVRLP D AGLDA+V PGGESTA+A + ERWG+   L++WV   +P+WGTCAGMILL++ A   K+GGQAL+GGLDVE+ RN+FG+QI SFEQ I             G   ++PY AVFIRAPAI+SV GE + +L+++                                  +  P++  +  +VIVAA+KDNILVTAFHPELT+D RWH YF++ +
Sbjct:    4 IGVLALQGAFEEHIDMLKQVGADAVEVRLPADLAGLDALVFPGGESTAIAKVAERWGMIEPLKQWVHDKKPIWGTCAGMILLAHSARHAKQGGQALIGGLDVEVSRNFFGAQIRSFEQQIQGP---------PGYG-DEPYTAVFIRAPAIVSV-GEHIDVLSEIS---------------------------------HAQPADGSDPTDVIVAARKDNILVTAFHPELTSDTRWHQYFVEQI 203
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: A0A7S1UCM2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCM2_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.700e-66
Identity = 128/251 (51.00%), Postives = 163/251 (64.94%), Query Frame = 2 
Query:  131 GKQHQEQLHVGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPY-PAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSEELPEVIVAAKKDNILVTAFHPELTADKRWHAYFLKM 880
            G++ +  + VGVLALQGAFEEH   L  LG    +VR   +  G+D +++PGGES+AMAL+GE  G +P L+ +V +G+PVWGTCAGMILLS+ AL QK GGQALVGGLDV++CRNYFG+QISS E   D ++      +  G   EK     VFIRAPAIL  AGEGV ++A + A PC+KA   L       A  P  +AK+ ++        E  EVIVA ++ +IL TAFHPELT D RW  YFL M
Sbjct:    6 GERTETMVEVGVLALQGAFEEHIEQLEQLGVAGRQVRTAAELEGIDGLIMPGGESSAMALVGEADGFWPDLKAFVQSGKPVWGTCAGMILLSDTALAQKRGGQALVGGLDVKVCRNYFGAQISSMEAAFDCSV------DAEGAPTEKDSCTGVFIRAPAILE-AGEGVQVMASLVAAPCAKAARQLANEERVTAVEP--AAKKPKV------VGEAREVIVAVRQGHILATAFHPELTEDLRWLKYFLGM 241
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: A0A485LR99_9STRA (Glutaminase n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A485LR99_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.430e-64
Identity = 122/242 (50.41%), Postives = 153/242 (63.22%), Query Frame = 2 
Query:  158 VGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSEELPEVIVAAKKDNILVTAFHPELTADKRWHAYFLKMV 883
            +GVLALQGAFEEH  +L+ +GA   EVRLP +  GLDA+V PGGESTA+A + ERWG+   L++WV   +P+WGTCAGMILL++ A   K+GGQAL+GGLDVE+ RN+FG+QI SFE+ I             G D   PY AVFIRAPAI+SV GE + +L+++                    A P   +          PS     VIVAA+KDNILVTAFHPELT D RWH YF++ V
Sbjct:    5 IGVLALQGAFEEHIAMLKQVGADAVEVRLPAELEGLDALVFPGGESTAIAKVAERWGMIEPLKQWVHDKKPIWGTCAGMILLAHSARHAKQGGQALIGGLDVEVSRNFFGAQIRSFEKAIQGP-------PGYGDD---PYNAVFIRAPAIVSV-GENIQVLSEIND------------------AQPADGSD---------PSN----VIVAARKDNILVTAFHPELTQDTRWHQYFVEQV 204
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BLAST of jgi.p|Trimin1|62088 vs. uniprot
Match: F0YP91_AURAN (Glutaminase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP91_AURAN)

HSP 1 Score: 211 bits (536), Expect = 5.380e-63
Identity = 123/244 (50.41%), Postives = 158/244 (64.75%), Query Frame = 2 
Query:  158 VGVLALQGAFEEHANLLRSLGAKVTEVRLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCAGMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGLTKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLALEASLNAPAASPERSAKRQRLEPYLTPSEELPEVIVAAKKDNILVTAFHPELTADKRWHAYFLKMVRE 889
            VGVLA+QG+ EEH  +L  LGA+  E+R P   AG+D +VLPGGESTAM ++ E  G++  +R  V  G PV+GTCAG++LL++ A+ Q++GGQ L+GGLD + CRNYFG+Q+SSFE P+  T  G + E+ A   V K YPAVFIRAPAIL V G+    LA V   P + A  A +    A AA PER                  EV+VAA++ NILVTAFHPELT D RWH  FL MV++
Sbjct:    9 VGVLAIQGSVEEHVAVLAGLGARTREIRTPDGVAGIDGLVLPGGESTAMGIMTEGDGLWETIRAAVDGGLPVYGTCAGLVLLADRAIGQRDGGQPLIGGLDCDCCRNYFGAQVSSFEVPLAATG-GASAEDAAL--VAKDYPAVFIRAPAILKV-GKKCEALASVTVAPHASAAPAAKKQAAAEAAIPER------------------EVVVAARQGNILVTAFHPELTDDTRWHDLFLAMVKK 230
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|62088 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YX69_9STRA9.310e-188100.00Glutaminase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
D7FWN1_ECTSI1.720e-8855.68Glutaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A7S2RJG7_9STRA1.690e-7753.33Glutaminase n=1 Tax=Rhizochromulina marina TaxID=1... [more]
A0A7S2FF77_9STRA1.370e-7050.00Glutaminase n=1 Tax=Dictyocha speculum TaxID=35687... [more]
K8YT50_NANGC4.270e-7049.82Glutaminase n=3 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A1V9YX66_9STRA3.690e-6850.41Glutaminase n=3 Tax=Saprolegniaceae TaxID=4764 Rep... [more]
W4G4V9_9STRA2.840e-6749.18Glutaminase n=9 Tax=Aphanomyces astaci TaxID=11209... [more]
A0A7S1UCM2_9STRA1.700e-6651.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A485LR99_9STRA1.430e-6450.41Glutaminase n=3 Tax=Aphanomyces TaxID=100860 RepID... [more]
F0YP91_AURAN5.380e-6350.41Glutaminase n=1 Tax=Aureococcus anophagefferens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_37contigContig_37:609347..616447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|62088|CE62087_56
BRITEko00000,ko00001,ko01000,ko01002
KEGG rclassRC00010,RC01783,RC03043
KEGG ReactionR07456
KEGG Pathwayko00750,map00750
KEGG koko:K01288,ko:K06215,ko:K08681
EC3.4.16.6,4.3.3.6
GOsGO:0003674,GO:0003824,GO:0004359,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009108,GO:0009110,GO:0009228,GO:0009987,GO:0010941,GO:0016787,GO:0016810,GO:0016811,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046184,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051186,GO:0051188,GO:0060548,GO:0065007,GO:0071704,GO:0072524,GO:0072525,GO:0072527,GO:0072528,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1903600
Preferred nameSNO1
Descriptionpyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0311@1|root,KOG3210@2759|Eukaryota
Evalue4.97e-91
Seed ortholog2880.D7FWN1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionClass I glutamine amidotransferase-like
Ec32 orthologEc-06_001280.1
TranscriptId62410
TrackFilteredModels1
ProteinId62088
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|62088gene_7861Tribonema minus UTEX_B_3156 geneContig_37 609347..616447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|62088Trimin1|62088|CE62087_56Tribonema minus UTEX_B_3156 polypeptideContig_37 609435..616186 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7861_1exon_7861_1Tribonema minus UTEX_B_3156 exonContig_37 609347..609581 +
exon_7861_2exon_7861_2Tribonema minus UTEX_B_3156 exonContig_37 610412..610497 +
exon_7861_3exon_7861_3Tribonema minus UTEX_B_3156 exonContig_37 611299..611416 +
exon_7861_4exon_7861_4Tribonema minus UTEX_B_3156 exonContig_37 613145..613321 +
exon_7861_5exon_7861_5Tribonema minus UTEX_B_3156 exonContig_37 613939..613971 +
exon_7861_6exon_7861_6Tribonema minus UTEX_B_3156 exonContig_37 615211..615378 +
exon_7861_7exon_7861_7Tribonema minus UTEX_B_3156 exonContig_37 616097..616447 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7861UTR5_7861Tribonema minus UTEX_B_3156 five_prime_UTRContig_37 609347..609434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7861CDS_7861Tribonema minus UTEX_B_3156 CDSContig_37 609435..609581 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7861UTR3_7861Tribonema minus UTEX_B_3156 three_prime_UTRContig_37 616187..616447 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7861 ID=mRNA_7861|Name=jgi.p|Trimin1|62088|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1168bp|location=Sequence derived from alignment at Contig_37:609347..616447+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCGCCCACCAGAGCTTCGCGACAACGATCTTGGCTGGTCACCAGTGCC
ATTCCTGTCGTTGCTGCCTGGCGGCTTTACACGAACAGATGGCTGTACAA
ACCCAACCCTCCGACGCTGTACAAGAGCACGGCAAACAACACCAGGAGCA
GTTGCACGTGGGAGTGCTGGCCCTACAGGGCGCCTTCGAGGAGCATGCCA
ACCTGCTGCGTAGCCTAGGAGCTAAAGTGACAGAGGTGCGGCTGCCCGGC
GATTTTGCGGGGCTGGATGCCATTGTGCTGCCAGGAGGGGAGAGCACTGC
CATGGCGCTGATAGGAGAACGGTGGGGGGTATTTCCACAGCTGCGCGAGT
GGGTGGCCACGGGCAGGCCGGTCTGGGGCACATGTGCGGGAATGATTCTG
CTGAGCAATGAGGCGCTGATGCAGAAGGAGGGCGGCCAGGCATTGGTGGG
AGGCCTGGATGTTGAAATCTGCCGCAACTACTTTGGCTCACAAATAAGCT
CCTTCGAGCAGCCAATCGACACCACTTTGCTGGGGCTCACAAAGGAGGAA
TGCGCAGGGACTGATGTGGAGAAACCCTACCCGGCGGTGTTTATTAGGGC
TCCTGCAATTCTATCGGTGGCCGGGGAGGGCGTTTCCATACTGGCAAAGG
TGCGCGCGCTGCCGTGTAGCAAGGCCCGGCTAGCACTGGAGGCATCGCTC
AACGCACCTGCAGCGTCCCCTGAACGGTCTGCGAAACGGCAACGGTTAGA
GCCGTACCTCACGCCTTCGGAGGAGCTTCCTGAGGTCATTGTGGCTGCCA
AGAAGGACAACATACTGGTTACGGCTTTCCACCCCGAGCTCACCGCAGAC
AAACGCTGGCACGCCTATTTCCTCAAGATGGTTCGAGAGGCCCAGACCAA
AACATAGTACTGCAACCTTGAGTGGTGAACACCATGTTGCTCACGCTGCA
GTTCACGCAGGTACATCAGTCAATTTAACCAGCGTTGCAGGTGTCTGACC
TGTTGAACATTTTGAAACTGCGCTGCCAGTCGAGAAATGTGTCCAATATG
CGTTGCCATGCGTCAAACACTTGACCATGCACGTTCTTGCGCAATATGCA
CACGTAATGGCAGCCGGCATCCCTTCAGGCCCCGCCAGGTGTTAATAAGA
TGCATCACTGACACCACC
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protein sequence of jgi.p|Trimin1|62088

>Trimin1|62088|CE62087_56 ID=Trimin1|62088|CE62087_56|Name=jgi.p|Trimin1|62088|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp
MAVQTQPSDAVQEHGKQHQEQLHVGVLALQGAFEEHANLLRSLGAKVTEV
RLPGDFAGLDAIVLPGGESTAMALIGERWGVFPQLREWVATGRPVWGTCA
GMILLSNEALMQKEGGQALVGGLDVEICRNYFGSQISSFEQPIDTTLLGL
TKEECAGTDVEKPYPAVFIRAPAILSVAGEGVSILAKVRALPCSKARLAL
EASLNAPAASPERSAKRQRLEPYLTPSEELPEVIVAAKKDNILVTAFHPE
LTADKRWHAYFLKMVREAQTKT*
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mRNA from alignment at Contig_37:609347..616447+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7861 ID=mRNA_7861|Name=jgi.p|Trimin1|62088|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7101bp|location=Sequence derived from alignment at Contig_37:609347..616447+ (Tribonema minus UTEX_B_3156 )
CAGCGCCCACCAGAGCTTCGCGACAACGATCTTGGCTGGTCACCAGTGCC
ATTCCTGTCGTTGCTGCCTGGCGGCTTTACACGAACAGATGGCTGTACAA
ACCCAACCCTCCGACGCTGTACAAGAGCACGGCAAACAACACCAGGAGCA
GTTGCACGTGGGAGTGCTGGCCCTACAGGGCGCCTTCGAGGAGCATGCCA
ACCTGCTGCGTAGCCTAGGAGCTAAAGTGACAGAGGTGAGGTTCAGTCAT
TTGAAAGGAGCTCAAGTTTGCAATGAGGTCGGCGCCGCACTTTGCCTGGG
AAGCAATATCTGACACACCAGTAGTTGTGCCATAATTCGTATGAGAATCA
CATGAGTACTGGCTCGCTTTCAAGCATGTTGTCTTGCAGGGACTCAATCC
GCTGGCATTTCAATCATTCTTGTCCGCTCGTGACGTGCATGATGAGGCCC
ATACCTTAGTTCCTTCACTTCGTATTTGCACCCATCTGATGATTTGGCGG
ATGAAATCGAACAGAGGCGCAATGCTACATCACAGTGGATTTTCTCATGC
CTGGGGATGAAATTAATGCAGTATTCCAATGCTCATGACAGCCCTCTCAG
CATGTGATCGCAGCACTCACTAGCTCAGGACGATATGCACACAGCCGAAT
TTCATCATATAGCTCTGGTCTTGTCCATCCAGCTTTGACTTACCTCCACA
TTGCACTACTCAGCAGTGATGATCGTGCTGGTGCTATGATACTTGGTGAC
GCTTGGGGGGGCTGTGCCTGCGACGCTGAGCACTGACATCGACAGTCAAA
CAAGCTCTTGCTCATACAGCAGGTAGACGTTGCGGATGCAGCTGGTACCG
CAGCAGTCAACACTGTGCAAATGTTGATGATACTTTGAATTGTGCGGGTT
GCTGGCTCTTCTGAGACCTTCATACGTACATACATACCGTCGTGGTTGCT
TCCCAAGTCGACAGCGTTCGCAATCGCGCGCTCATCTTGCCCGCGACATC
AAGAGATCGAACACACCACCCCTTTACACAGCGTTCTGTGCCATTGTTTT
CGATTTTGCTCTCAGGTGCGGCTGCCCGGCGATTTTGCGGGGCTGGATGC
CATTGTGCTGCCAGGAGGGGAGAGCACTGCCATGGCGCTGATAGGAGAAC
GGTGAGTTGCAGTGGTGGTGCAGCAGAGCTCAGCAGAGCTCTTTCCTCTG
TTGTGGCTAGGGTTAGTGATTGGTCTTGGCGATTATGCTGTCGCCTGGCA
GGTGCGCTAACGAAACTGAAGTTGGCAACTTCAAGCGGGCTGATCAGCAT
ATATGGTGGTCACGCTGACTTCCTGAGGTTTGGAAAGATGTAGTGTCAGG
GCTAGGTTTCAAAGTTGCGTCAAAATGCCACAACTGACTTGCCAAGTTGA
GCAGGGCCTGAGATCTGTGGTGCAGGCTGACTGGACGATCATGAGCTTCA
TTTGCTCGGCAGTAGACATGTTTGTAGACTGCAGTAGAACGCACCTGCAG
TGCTTAACTCTGTAGGCGCTAAATGTGCTTGGTGTGCGCGCATTGTAGTA
AGGGCGTCGACCAGTGTTGACTGCTTGTTTATATCACACAGTGACACTCG
CGGTGGTGCGCTTTGCTCACTGTAGTCAGCTGCAGCTTGCGGACAGTACG
CTGTAGACTCCCAGTGTGAGCACGCACGCGGCTTATAGAGCCTGGTGGGG
CACGGCATCAGTATTTGTGTGTGCAACAACTGCCGCAAATTCTTCAAAGA
CTTGTGTTGCCTGACCTCAAACCTCGCAGTGTGTATGAGTGTGTGTTTCA
ATGTGTGGTCACACGCATGCACGTATCTCATGCTGTGACGAACAGTCCAA
CATCGTATAAATGATCACCTTTTCTAGCATTGTATCAATAATCACATCTC
TCTCTAGCGCGGATGAGTATAGCCCGCAATGATAATTGCCATTCATGTGC
AGGTGGGGGGTATTTCCACAGCTGCGCGAGTGGGTGGCCACGGGCAGGCC
GGTCTGGGGCACATGTGCGGGAATGATTCTGCTGAGCAATGAGGCGCTGA
TGCAGAAGGAGGGCGGCCAGGTCAGGCCTGAACGTTTGCGCAATGATGAT
GAGTTGAATCACGTGTAATAATGATGACGAGGAGGGGCTGTTATTTGAAA
CCGACAATACGAGCAACATGATCATCACCATGCGCAATGAAGTGTTGATG
CAGGAGGAGGGCGGCCAGGTCAGGCTTTGAAGTATGCGCAATGACGATGA
GTTGAAATACATGTAATGATGATGATGAGGGGGGCTGTTATCTTGAAACA
GTCGTTGCAAGCAAATGATGATGCCCTTGCGCAATGAGGCGCTAATGCAG
GCGGAGGGTGGGCAGGTTAGTTCTTAACGTATGCGCAATGATGAAGTACT
GAGGTACACGTAATGATGCTGGCGAGATCCAAAGCAAAATGATGAACATG
CTGTGAACAATGAGGCACTGGTGTACTTAGAAGCAAGGCAGCCAGGTCTG
TTCCTGAACAGATATGTAGCATGCACACCGATTCAGAGCTGGATGGTGCA
TACTGTCGATTATGAGTACTGTTTCATACTTTGAGCAATGAGGCACTAGT
GTAGCAGCAGGGCGCTCAAATCAGGTCTTTGAAGAAGAAGTATCAGTAAT
GACACCAAGTTAAGGAGAGGTGAGGAAGGAGTGTTTGAGCTTGTGGCATG
ATGCAGAAGGCGAGTGGCCTGCTTAGGCAGTGCAACATGCGCATCGATGA
ATTGCTTAAGTCTATGCAAAGGAGACTGTGAAGGCATGCGCAATCATAAA
GAGTGGAATCTGCGCAGTCATACATACAGAGCTGCCACAATGCTTCATGA
ATGCACCCCATGTGTAGCCTGCTGATGGATGGCTAGCAGTTTTCACTGCT
TCTATTTGAAATTACATACACCCGAAGCTCACCTTTTGATGCTTCTGTTG
CAGTAGATGTTTCACCAGACCACTCTGTGCCAGTACATGATGTTGCCTGG
AGTATTTATCTTGCTCGGTAGTGTTTGCATGTAGATGCAACTTCAAATGT
GCTCACCGGTGCGCAGCCTTTTGATCTTGCTCCTATGTATACTATATGAT
GGCGCAGTAGAAGTGCACCAGGCTCATAAGTAACCCCTGAGAGTTGCACC
AGCCATGTCTTTCTCCGTAGGAAACGCTTTATCATGCATGTCAGTTGGCA
TGGCAGCAATAGGAACATAAAGCCAAGATGCCTGGGCCGCTTCGGAACAC
AAGTGGATGTAGGCACCAACCGGCAAGGTTATGGCGGGTACGTAACCGCT
TAACTGTTACTGCAAACAGACATGAACCACGTAACTATTGGCTAAACTCT
GAACAAGCCCATACTCAAACTAGTGTTTCAAGCAGATTATCACATTGTTG
CGATGAAAGAAATTGGTTCCAGAATTGAAATCGAAATTAGGTGTTCCGCG
AGAGGACGCAGCCCAGTGTTAAAGTTGTCCTCTGTGTCACAGCACATTTC
TATTCCAAGTAGAGACATTGTGGTGCTCTTGTCTCCGTGTATGGCACAGC
AATGAATTCTGCAGACTTGTCACCGCTATGCTTCAAGCACGCTTTGAGTG
AAGGACCGAAAAACAGCACACCAGATGCATTCCGGCTCAGGCAGGCTGTT
GGAGATGCCTTTGAAAATCCGCTCACTGTAATATGCAACTCTTGCTGTTT
GTGTGTATGGTATGATTGCATACCCATAGCATCGACTTGCGTACATGCCT
CTGACTTCCATTGCACACTGCCCCCAATCCAACACCCAAACCTGACAGGC
ATTGGTGGGAGGCCTGGATGTTGAAATCTGCCGCAACTACTTTGGCTCAC
AAATAAGCTCCTTCGAGCAGCCAATCGACACCACTTTGCTGGGGCTCACA
AAGGAGGAATGCGCAGGGACTGATGTGGAGAAACCCTACCCGGCGGTGTT
TATTAGGGCTCCTGCAATTCTATCGGTGAGCTTGCAGCTTGAATTAGGTT
AGAGGTTGGCGTGAAGTCATTTGTACTGTTTACAACTGCCGTATGTGTTT
TTCAGTTCACCTGGTTCTGGTCCATGTACTGCTGGATAACATGTTGGCGT
GCCGTGGCACGGTACTCGTGTTTGTTTGCTTGACGCCAATGCGAGTTGTA
GTGCTTTCTGACATGTTATGACGCAGGGTGAGGCATGCTGCACACACGTC
GAAGCATCACAGCGATTGCCTGTGTTCATGTTAGGATGAGGACTTTCCTG
ACAATGAGCTGATGCTCCCAGTGCATACCCAGTGCATATATGAATGACAA
CGCTTGTCAAGTCTGCAACTGTTTTTGAAATGACAACGCTTGTCAAGTCT
GCAAATGTTTTTTATGTATGTAAGTGTATATCATTTTGGACTTCAACAGT
TGGGCTGTGCGGCGGCGCATTGAGTTTCCTTCCAATTCATATCTATATAA
GGGCCACATCACCTGATGTGACTTCACCGAGGTGGCCAAATACATTACGA
GGTTTTGCCCAGACCCTCATTTGTTTATTGACCCTGATGTTATTGTGAAC
TCTCGTCCTATACATTCTGTGTTCGTGTTGTCTGTTGTGCAGGTGGCCGG
GGAGGGCGTTTCCATACTGGCAAAGGTGAAGTTTTACATGATTGCCTCAA
AACCCTTCTCAAACCTGATGCTAGCGGCTCAGTGGGGCTGCATGAAGTCG
ATCGTCTACTGGGGTAGCCAGTGGCAGGCACTGCATCAGGTGTTGTTTTC
CTAAACGCCATGGATGAACTGTTACTGGTCTTTCAGTTGGCAAGTGACTG
ATGCCTTAGCAGGCTTTCCCCCACTGTGTCCCCATCACTTCTTCTGCCAA
ATGTACAGAGACCTGCTGGAGTATGTGATCGTGTACAGAGAGAGACCTGC
GGCGAAGTATGTTATTTGTTGAGGGGGCAGTGGCGCCATACTTCATGCGC
CACAGATATTGGACTACATGTGGCTTAGCAGTTCTGTAACAATGACTTCA
CACTGCAAGCTCAGTTGCGCGTATGACTCTTGCCCGGGGCCCCTGAGGCT
CCAAGTTCTCACTACTTCACTTGAAGTATAGTAGATAGGACAGTGTTACC
TTCCCCAGACTGCCCAATCGTGCCACGTGCGACACCCCGTGGTGCTGCCG
CCACGAATGCAATAACAGCAATTGCGCAGGGTCTGAGCACTGCTGAGCAC
AACTCCAGTGGCGCATACCTTCGCGACAGCTTGAGCTGTAACCTCAAGAG
CGCGTGGCCTGGGTTGTGTCACACCACATACAACACCTCATGTTGTTGCC
AACACAAATGCAATACCAGCAAATGCACAAGGTCTGAGCATCGCTGAGCA
CTGCTGAGCCGTGCATACCTTCACGGCAGCGCGTGCTATCAGCTCATGGA
CACGTGGTTTCGGTTATGTCGGTCAGCAGGGTGTGCATGGGCAGGCCTGT
CACAAGGCTTGCCTGTGCTGTGTCAATGGCCCCTGTTTGCACTCCAGCCT
CAATCACGACTTCAAAATTGTGACCCTTCAATGTATGCACATCAAGTAAA
CCAGCTACAGCTCTCGTGTCTGTGGCCTGTGCAGTGGCAGCAATCGCGCG
TACGCTCCTGCGGACTCTGCTGTGGCACTCTATGAGCCGATCATGGGTGC
TGCAATGTGCGCATATTGACTGCATAACTACATGACAGAGTTATCTTGCC
CTCGCTTTGCATGCATGCCGCCTGAAGGTGTCACTGCGCGCAAATTAACA
TATACGAAACATCCAAACGGAGGCTGCAATTTCTCCTCTATGTTGTGCAT
GGTGCGTCTCATTTCATATCACAAATGTGGCACTCATCATTATGTGTGCA
TGATTGCAATCCAGGTGCGCGCGCTGCCGTGTAGCAAGGCCCGGCTAGCA
CTGGAGGCATCGCTCAACGCACCTGCAGCGTCCCCTGAACGGTCTGCGAA
ACGGCAACGGTTAGAGCCGTACCTCACGCCTTCGGAGGAGCTTCCTGAGG
TCATTGTGGCTGCCAAGAAGGACAACATACTGGTGAGTGGTTTCATTCAA
ATGTGCTATTTGTTGAAGTTTGCGTTCGTGCATCATGAACAGTGTCAGAT
GAACATGGTCCGGCTTTCGCACAGGCTTGGCAGTGGGCGGTTGGCCCTGT
GGGTGGGGACGGCAAGAATGGCCCCGTTGCTTGCACATCGTGTTGTGTGT
CACACTGTCAGGTCTATTGCGATAGTGTGGAATCCCGCCAGAAAGGGGGA
AGCTTCCCTGCCAAGGGTACGAAAGGTTTTCAGCTCAACGGTCATGCCAG
GGCCACCACAGTTTGCTTCCGTACGAGGCTAATGTCAGACCTACCATCAT
CTGATTGCCGGAAGGATACGGTTGACTATATGACCGCATTGGTGATGAGT
TGTGTTGGTAGTAACAGAAGCCCGGGCACTTGCCGGTATGCTGAAGGGCC
AATAGTGTGCTCGTACAAGTCGCTAGCGCTGTAAGTGACGTTGCGTTGGC
CATGTACATAAACTAGAGCGCTGTACACAATGCGGTTTGTAATTCATTGA
AATTACGCGAGGATCACGGCCACAAGTGGCTGTACAGCACGGGTCTTACC
ATCTTTGCAGCACGGAAGAAATGTCTTCTCATGTGCAGACTGTCTGCGTG
ACATCAACTTCAAGCTTCTTTCATTCAAGTTTGCCTTTTATGATCCTCAC
AACATTGGCAATAAACTGATTAGTTTGCTGCTACTGCTTTGTGTGGCCAG
GTTACGGCTTTCCACCCCGAGCTCACCGCAGACAAACGCTGGCACGCCTA
TTTCCTCAAGATGGTTCGAGAGGCCCAGACCAAAACATAGTACTGCAACC
TTGAGTGGTGAACACCATGTTGCTCACGCTGCAGTTCACGCAGGTACATC
AGTCAATTTAACCAGCGTTGCAGGTGTCTGACCTGTTGAACATTTTGAAA
CTGCGCTGCCAGTCGAGAAATGTGTCCAATATGCGTTGCCATGCGTCAAA
CACTTGACCATGCACGTTCTTGCGCAATATGCACACGTAATGGCAGCCGG
CATCCCTTCAGGCCCCGCCAGGTGTTAATAAGATGCATCACTGACACCAC
C
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Coding sequence (CDS) from alignment at Contig_37:609347..616447+

>mRNA_7861 ID=mRNA_7861|Name=jgi.p|Trimin1|62088|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_37:609347..616447+ (Tribonema minus UTEX_B_3156 )
ATGGCTGTACAAACCCAACCCTCCGACGCTGTACAAGAGCACGGCAAACA
ACACCAGGAGCAGTTGCACGTGGGAGTGCTGGCCCTACAGGGCGCCTTCG
AGGAGCATGCCAACCTGCTGCGTAGCCTAGGAGCTAAAGTGACAGAGGTG
CGGCTGCCCGGCGATTTTGCGGGGCTGGATGCCATTGTGCTGCCAGGAGG
GGAGAGCACTGCCATGGCGCTGATAGGAGAACGGTGGGGGGTATTTCCAC
AGCTGCGCGAGTGGGTGGCCACGGGCAGGCCGGTCTGGGGCACATGTGCG
GGAATGATTCTGCTGAGCAATGAGGCGCTGATGCAGAAGGAGGGCGGCCA
GGCATTGGTGGGAGGCCTGGATGTTGAAATCTGCCGCAACTACTTTGGCT
CACAAATAAGCTCCTTCGAGCAGCCAATCGACACCACTTTGCTGGGGCTC
ACAAAGGAGGAATGCGCAGGGACTGATGTGGAGAAACCCTACCCGGCGGT
GTTTATTAGGGCTCCTGCAATTCTATCGGTGGCCGGGGAGGGCGTTTCCA
TACTGGCAAAGGTGCGCGCGCTGCCGTGTAGCAAGGCCCGGCTAGCACTG
GAGGCATCGCTCAACGCACCTGCAGCGTCCCCTGAACGGTCTGCGAAACG
GCAACGGTTAGAGCCGTACCTCACGCCTTCGGAGGAGCTTCCTGAGGTCA
TTGTGGCTGCCAAGAAGGACAACATACTGGTTACGGCTTTCCACCCCGAG
CTCACCGCAGACAAACGCTGGCACGCCTATTTCCTCAAGATGGTTCGAGA
GGCCCAGACCAAAACATAG
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