mRNA_780 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156919
Unique NamemRNA_780
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: A0A835Z4S2_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S2_9STRA)

HSP 1 Score: 429 bits (1102), Expect = 5.800e-152
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1
Query:    1 MRTTPAEILDVDCGCGCSTVSIASNYSAASVTGIDTNGYSVAIAAIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCATLPEYTYAVDHIKFILEHAGFACVEWAVDQIPGTAMITAWRTVGTPIPVKLAVPHKYFARAKKANLLGMSPFEVVAFVIQFVLAYAWSQVIMDLLRMWLKF 636
            MRTTPAEILDVDCGCGCSTVSIASNYSAASVTGIDTNGYSVAIAAIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCATLPEYTYAVDHIKFILEHAGFACVEWAVDQIPGTAMITAWRTVGTPIPVKLAVPHKYFARAKKANLLGMSPFEVVAFVIQFVLAYAWSQVIMDLLRMWLKF
Sbjct:    1 MRTTPAEILDVDCGCGCSTVSIASNYSAASVTGIDTNGYSVAIAAIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCATLPEYTYAVDHIKFILEHAGFACVEWAVDQIPGTAMITAWRTVGTPIPVKLAVPHKYFARAKKANLLGMSPFEVVAFVIQFVLAYAWSQVIMDLLRMWLKF 212          
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: A0A835YWG9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.070e-29
Identity = 72/208 (34.62%), Postives = 116/208 (55.77%), Query Frame = 1
Query:    1 MRTTPAEILDVDCGCGCSTVSIASNYSAASVTGIDTNGYSVAIAAIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCATLPEYTYAVDHIKFILEHAGFACVEWAVDQIPGTAMITAWRTVGTPIPVKLAVPHKYFARAKKANLLGMSPFEVVAFVIQFVLAYAWSQVIMDLLRM 624
            M + P ++LDV  G G ST  +  ++  A VT +D + +S+A +++D       H +  ++PF DA FD+VNL ++++   +      + E  RV RH GVI +LD        +  +    +K+ILEHAG+A V   VD    T M+TAWRTVG PI V++AV  +     KK   L    FE+++ ++Q   A  W+ VI++L+++
Sbjct:    1 MNSCPYDVLDVGAGLGASTHMLTRSFPEARVTAVDVDSHSLAASSVD--IFLRCHADAQSLPFEDACFDLVNLAYIVNEIPVDAAALIMAECARVTRHTGVIAMLDRK-----AKSGFTAKDLKYILEHAGYAVVN--VDDSHDTRMVTAWRTVGAPIKVQVAVQAQ-----KKGGALWA--FELLSTILQLFAAVMWTLVILELIKL 192          
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: UPI0004E0D1E4 (demethylmenaquinone methyltransferase n=1 Tax=Salinicoccus luteus TaxID=367840 RepID=UPI0004E0D1E4)

HSP 1 Score: 64.3 bits (155), Expect = 5.990e-9
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   19 EILDVDCGCGCSTVSIASNYSAASVTGIDTNGYSVAIAA---IDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSD 327
            +ILDV CG G  T+ +A     A V G+D +   + +AA    DH  I+ + GN  A+PF D SFD V +      + L + +  + E  RVL+ GG + +L+TS+
Sbjct:   48 DILDVCCGTGDWTIQLAEEAPEAEVIGLDFSERMLEVAAEKTADHSNIELIQGNAMALPFDDGSFDYVTIG--FGLRNLPEYRKAIEEFHRVLKPGGALVVLETSN 151          
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: UPI0018921B57 (methyltransferase domain-containing protein n=1 Tax=Quadrisphaera sp. INWT6 TaxID=2596917 RepID=UPI0018921B57)

HSP 1 Score: 64.7 bits (156), Expect = 6.370e-9
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   19 EILDVDCGCGCSTVSIASNYSAASVTGIDTN----GYSVAIAAIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCAT 336
            ++LD+ CG G  T  +A   +   V G+D      G + ++AA     ++WV G+  A+P+ DASFD+V+   V+  + +AD    L EA RVLR GG++ + D    AT
Sbjct:   37 DLLDLGCGPGTITADLAQRVAPGRVVGLDAAAAVLGEAASLAAARGVDVEWVVGDALALPYGDASFDVVHAHQVL--QHVADPVAVLREAARVLRPGGLLAVRDVDYAAT 144          
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: A0A5C8ZD56_9ACTN (Methyltransferase domain-containing protein n=2 Tax=Quadrisphaera sp. DD2A TaxID=2593304 RepID=A0A5C8ZD56_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 4.060e-8
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   19 EILDVDCGCGCSTVSIASNYSAASVTGIDTNG----YSVAIAAIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCAT 336
            ++LD+ CG G  T  +A+  +   V G+D        + A+A      ++WV G+  A+PF DASFD+V+   V+  + L D    L EA RVLR GG++ + D    AT
Sbjct:   37 DLLDLGCGPGTITADLAARVAPGRVVGLDAAAGVLEEAAALAERRGLAVEWVVGDALALPFEDASFDVVHAHQVL--QHLPDAVGALREAARVLRPGGLLAVRDVDYAAT 144          
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: A0A316A7L1_9ACTN (Methyltransferase family protein n=1 Tax=Quadrisphaera granulorum TaxID=317664 RepID=A0A316A7L1_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 4.160e-8
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   19 EILDVDCGCGCSTVSIASNYSAASVTGIDTNG----YSVAIAAIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCAT 336
            ++LD+ CG G  TV +A   +   V G+D        + A+A      ++WV G+  A+PF DASFD+V+   V+  + +AD    L E  RVLR GGV+ + D    AT
Sbjct:   37 DLLDLGCGPGTITVDLAERVAPGRVVGLDAAAGVLEEASALAERRGAAVEWVTGDALALPFADASFDVVHAHQVL--QHVADPVGVLREMARVLRPGGVLAVRDVDYAAT 144          
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: M7PA95_9BACL (Demethylmenaquinone methyltransferase n=6 Tax=Bhargavaea TaxID=941338 RepID=M7PA95_9BACL)

HSP 1 Score: 61.6 bits (148), Expect = 5.390e-8
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 1
Query:    7 TTPAEILDVDCGCGCSTVSIA-SNYSAASVTGID--TNGYSVAIAAIDHPT-IKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCATLPEYTYA 357
            T  A  LDV CG G  T+++A +   +  VTG+D   N  SVA    +  T I++V GN   +PF D SFD V +      + + D++ TL E  RVL+ GG+I  L+TS   TLP Y  A
Sbjct:   46 TKGASALDVCCGTGDWTIALADATGPSGKVTGLDFSANMLSVAKEKTEGRTNIRFVEGNAMDLPFPDNSFDYVTVG--FGLRNVPDLRKTLFEMHRVLKPGGMIACLETSQ-PTLPGYRQA 163          
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: A0A135WAR3_9BACL (Demethylmenaquinone methyltransferase n=1 Tax=Sporosarcina sp. HYO08 TaxID=1759557 RepID=A0A135WAR3_9BACL)

HSP 1 Score: 59.7 bits (143), Expect = 2.600e-7
Identity = 47/131 (35.88%), Postives = 64/131 (48.85%), Query Frame = 1
Query:   16 AEILDVDCGCGCSTVSIASNYSA-ASVTGIDTNGYSVAIA---AIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSDCATLPEYTYAVD-HIKFILEHAG 393
            A  LDV CG    T+++A    A   VTG+D +   +A       D+P I  V GN   +PF D SFD V +      + +AD  T L E  RVL+ GG+I  L+TS    +P Y      + KFI+   G
Sbjct:   49 ASALDVCCGTADWTIALAEAVGADGHVTGLDFSEGMLATGREKTADYPNITLVQGNAMQLPFPDHSFDYVTIG--FGLRNVADYLTVLKEMNRVLKPGGMIACLETSQ-TKIPGYRQLFKFYFKFIMPVLG 176          
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: UPI00037596E8 (demethylmenaquinone methyltransferase n=1 Tax=Salinicoccus albus TaxID=418756 RepID=UPI00037596E8)

HSP 1 Score: 58.9 bits (141), Expect = 5.100e-7
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 1
Query:   19 EILDVDCGCGCSTVSIASNYSAASVTGIDTNGYSVAIA---AIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTSD 327
            ++LDV CG G  ++ +A     A VTG+D +   + IA      H  I+ + GN   MPF D  FD V +      + L   K+ + E  RVL+ GGV+ IL+TS+
Sbjct:   48 QVLDVCCGTGDWSIQLAEKAPGAQVTGLDFSENMLEIAKDKTKHHKNIELLQGNAMDMPFEDGLFDFVTIG--FGLRNLPGYKSAIDEFYRVLKPGGVLVILETSN 151          
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Match: A0A377FUG2_9BACL (Demethylmenaquinone methyltransferase n=30 Tax=Bacillales Family XII. Incertae Sedis TaxID=539742 RepID=A0A377FUG2_9BACL)

HSP 1 Score: 58.5 bits (140), Expect = 6.850e-7
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 1
Query:   16 AEILDVDCGCGCSTVSIASNYSAASVT-GIDTNGYSVAIA---AIDHPTIKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGGVITILDTS 324
            A+ LDV CG    T+ +A+      V  G+D +   +A+      D PTI+ +HGN  A+PF D SFD V +      + + D  T L E  RVL+ GG +  L+TS
Sbjct:   51 AKCLDVCCGTADWTIQLAAAAGNTGVVKGLDFSENMLAVGNEKVADMPTIELIHGNAMALPFGDDSFDYVTIG--FGLRNVPDYMTVLREMHRVLKPGGTVVCLETS 155          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156919 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4S2_9STRA5.800e-152100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YWG9_9STRA4.070e-2934.62S-adenosyl-L-methionine-dependent methyltransferas... [more]
UPI0004E0D1E45.990e-935.85demethylmenaquinone methyltransferase n=1 Tax=Sali... [more]
UPI0018921B576.370e-935.45methyltransferase domain-containing protein n=1 Ta... [more]
A0A5C8ZD56_9ACTN4.060e-835.45Methyltransferase domain-containing protein n=2 Ta... [more]
A0A316A7L1_9ACTN4.160e-836.36Methyltransferase family protein n=1 Tax=Quadrisph... [more]
M7PA95_9BACL5.390e-839.67Demethylmenaquinone methyltransferase n=6 Tax=Bhar... [more]
A0A135WAR3_9BACL2.600e-735.88Demethylmenaquinone methyltransferase n=1 Tax=Spor... [more]
UPI00037596E85.100e-735.85demethylmenaquinone methyltransferase n=1 Tax=Sali... [more]
A0A377FUG2_9BACL6.850e-736.45Demethylmenaquinone methyltransferase n=30 Tax=Bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1407026..1407664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156919|e_gw1.2.241.1
DescriptionMethylase involved in ubiquinone menaquinone biosynthesis
COG categoryQ
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1FZVA@1117|Cyanobacteria,1H7E7@1150|Oscillatoriales
Evalue6.33e-12
Seed ortholog118168.MC7420_7742
Hectar predicted targeting categoryother localisation
TranscriptId157241
TrackFilteredModels1
ProteinId156919
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156919gene_780Tribonema minus UTEX_B_3156 geneContig_2 1407026..1407664 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_780_1exon_780_1Tribonema minus UTEX_B_3156 exonContig_2 1407026..1407664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_780CDS_780Tribonema minus UTEX_B_3156 CDSContig_2 1407026..1407664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156919Trimin1|156919|e_gw1.2.241.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1407026..1407664 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_780 ID=mRNA_780|Name=jgi.p|Trimin1|156919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_2:1407026..1407664- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGACCACGCCTGCGGAGATTCTGGATGTGGACTGCGGCTGCGGATG
CTCCACCGTTTCAATCGCCTCCAACTATTCGGCAGCCTCAGTCACCGGCA
TCGACACCAACGGGTACAGTGTGGCAATTGCCGCCATCGATCACCCCACA
ATCAAATGGGTCCATGGAAACACAACGGCAATGCCGTTCCACGATGCGTC
TTTCGACATGGTCAACCTCGATCACGTCATCAGCTGCAAGACTCTTGCTG
ACATCAAGACGACTCTACTGGAAGCGGGGCGTGTGCTGAGGCACGGCGGC
GTCATCACCATACTTGATACGTCCGATTGCGCTACACTGCCAGAGTATAC
GTATGCAGTCGATCACATCAAGTTTATACTTGAGCACGCCGGATTTGCGT
GTGTTGAGTGGGCTGTAGATCAGATACCGGGCACTGCAATGATCACCGCA
TGGCGCACCGTGGGCACACCAATTCCAGTGAAGCTAGCGGTGCCTCACAA
GTACTTTGCCAGAGCCAAGAAGGCGAATTTGCTCGGCATGTCGCCGTTTG
AGGTGGTCGCGTTCGTGATTCAGTTTGTGCTAGCCTATGCGTGGTCGCAA
GTCATCATGGATTTGCTGCGCATGTGGCTCAAGTTTTGA
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protein sequence of jgi.p|Trimin1|156919

>Trimin1|156919|e_gw1.2.241.1 ID=Trimin1|156919|e_gw1.2.241.1|Name=jgi.p|Trimin1|156919|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp
MRTTPAEILDVDCGCGCSTVSIASNYSAASVTGIDTNGYSVAIAAIDHPT
IKWVHGNTTAMPFHDASFDMVNLDHVISCKTLADIKTTLLEAGRVLRHGG
VITILDTSDCATLPEYTYAVDHIKFILEHAGFACVEWAVDQIPGTAMITA
WRTVGTPIPVKLAVPHKYFARAKKANLLGMSPFEVVAFVIQFVLAYAWSQ
VIMDLLRMWLKF*
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mRNA from alignment at Contig_2:1407026..1407664-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_780 ID=mRNA_780|Name=jgi.p|Trimin1|156919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_2:1407026..1407664- (Tribonema minus UTEX_B_3156 )
ATGAGGACCACGCCTGCGGAGATTCTGGATGTGGACTGCGGCTGCGGATG CTCCACCGTTTCAATCGCCTCCAACTATTCGGCAGCCTCAGTCACCGGCA TCGACACCAACGGGTACAGTGTGGCAATTGCCGCCATCGATCACCCCACA ATCAAATGGGTCCATGGAAACACAACGGCAATGCCGTTCCACGATGCGTC TTTCGACATGGTCAACCTCGATCACGTCATCAGCTGCAAGACTCTTGCTG ACATCAAGACGACTCTACTGGAAGCGGGGCGTGTGCTGAGGCACGGCGGC GTCATCACCATACTTGATACGTCCGATTGCGCTACACTGCCAGAGTATAC GTATGCAGTCGATCACATCAAGTTTATACTTGAGCACGCCGGATTTGCGT GTGTTGAGTGGGCTGTAGATCAGATACCGGGCACTGCAATGATCACCGCA TGGCGCACCGTGGGCACACCAATTCCAGTGAAGCTAGCGGTGCCTCACAA GTACTTTGCCAGAGCCAAGAAGGCGAATTTGCTCGGCATGTCGCCGTTTG AGGTGGTCGCGTTCGTGATTCAGTTTGTGCTAGCCTATGCGTGGTCGCAA GTCATCATGGATTTGCTGCGCATGTGGCTCAAGTTTTGA
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Coding sequence (CDS) from alignment at Contig_2:1407026..1407664-

>mRNA_780 ID=mRNA_780|Name=jgi.p|Trimin1|156919|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_2:1407026..1407664- (Tribonema minus UTEX_B_3156 )
ATGAGGACCACGCCTGCGGAGATTCTGGATGTGGACTGCGGCTGCGGATG
CTCCACCGTTTCAATCGCCTCCAACTATTCGGCAGCCTCAGTCACCGGCA
TCGACACCAACGGGTACAGTGTGGCAATTGCCGCCATCGATCACCCCACA
ATCAAATGGGTCCATGGAAACACAACGGCAATGCCGTTCCACGATGCGTC
TTTCGACATGGTCAACCTCGATCACGTCATCAGCTGCAAGACTCTTGCTG
ACATCAAGACGACTCTACTGGAAGCGGGGCGTGTGCTGAGGCACGGCGGC
GTCATCACCATACTTGATACGTCCGATTGCGCTACACTGCCAGAGTATAC
GTATGCAGTCGATCACATCAAGTTTATACTTGAGCACGCCGGATTTGCGT
GTGTTGAGTGGGCTGTAGATCAGATACCGGGCACTGCAATGATCACCGCA
TGGCGCACCGTGGGCACACCAATTCCAGTGAAGCTAGCGGTGCCTCACAA
GTACTTTGCCAGAGCCAAGAAGGCGAATTTGCTCGGCATGTCGCCGTTTG
AGGTGGTCGCGTTCGTGATTCAGTTTGTGCTAGCCTATGCGTGGTCGCAA
GTCATCATGGATTTGCTGCGCATGTGGCTCAAGTTTTGA
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