mRNA_7797 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140318
Unique NamemRNA_7797
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: A0A836CD43_9STRA (Putative zinc-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD43_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.380e-33
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKTRFEGGXXXXXXAGSG 177
            DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKTRFEGGXXXXXXAGSG
Sbjct:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKTRFEGGXXXXXXAGSG 59
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BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: L0FC45_DESDL (zf-trcl domain-containing protein n=10 Tax=root TaxID=1 RepID=L0FC45_DESDL)

HSP 1 Score: 78.2 bits (191), Expect = 1.680e-17
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKTRFEGG 147
            D +L CKDC   F+FTVGEQEFYAEKGFE  PQRCRDCR A+K    GG
Sbjct:    5 DKDLVCKDCGTTFVFTVGEQEFYAEKGFENEPQRCRDCRNARKASRNGG 53
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BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: A0A0J1F7F6_9FIRM (zf-trcl domain-containing protein n=2 Tax=Peptococcaceae TaxID=186807 RepID=A0A0J1F7F6_9FIRM)

HSP 1 Score: 77.0 bits (188), Expect = 4.670e-17
Identity = 35/49 (71.43%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKTRFEGG 147
            D EL CKDC   FIFT GEQEFYAEKGFE  P RCRDCR A+KT   GG
Sbjct:    5 DKELVCKDCGATFIFTAGEQEFYAEKGFEHEPLRCRDCRSARKTARNGG 53
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BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: UPI001A8D493B (zinc-ribbon domain containing protein n=1 Tax=Paradesulfitobacterium ferrireducens TaxID=2816476 RepID=UPI001A8D493B)

HSP 1 Score: 74.3 bits (181), Expect = 5.570e-16
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKTRFEG 144
            D EL CKDC   FIFT GEQEFYAEKGFE  P RCRDCR A+K+   G
Sbjct:    5 DKELVCKDCGATFIFTAGEQEFYAEKGFENEPLRCRDCRSARKSARNG 52
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BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: A0A2V2EH22_9FIRM (Zinc-binding protein n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A2V2EH22_9FIRM)

HSP 1 Score: 73.6 bits (179), Expect = 1.060e-15
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKTRFEG 144
            D EL CKDC   F+FT GEQEFYAEKGF+  PQRC+DCR A+K   +G
Sbjct:    4 DKELVCKDCGQTFVFTAGEQEFYAEKGFQNEPQRCKDCRSARKAASKG 51
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BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: A0A0J1FUD1_9FIRM (zf-trcl domain-containing protein n=2 Tax=Desulfosporosinus TaxID=79206 RepID=A0A0J1FUD1_9FIRM)

HSP 1 Score: 74.7 bits (182), Expect = 1.150e-15
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKT 132
            D EL CKDC   FIFT GEQEFYAEKGFE  PQRCR+CR A+K 
Sbjct:   45 DKELVCKDCGATFIFTAGEQEFYAEKGFENEPQRCRECRNARKA 88
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BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: W0EBW6_9FIRM (Zinc-binding protein n=1 Tax=Desulfitobacterium metallireducens DSM 15288 TaxID=871968 RepID=W0EBW6_9FIRM)

HSP 1 Score: 73.2 bits (178), Expect = 1.590e-15
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKT 132
            D EL CKDC   FIFT GEQEFYAEKGFE  PQRCR+CR  +K 
Sbjct:    5 DKELVCKDCGATFIFTAGEQEFYAEKGFENEPQRCRECRNTRKA 48
[Close]
BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: A1HT16_9FIRM (zf-trcl domain-containing protein n=2 Tax=Sporomusaceae TaxID=1843490 RepID=A1HT16_9FIRM)

HSP 1 Score: 72.8 bits (177), Expect = 2.200e-15
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKTRFEGG 147
            D  L CKDC   F+FT GEQEFYAEKGFE  P RCR CR+AK+ + EGG
Sbjct:    5 DKTLKCKDCGAEFVFTAGEQEFYAEKGFENEPARCRSCREAKRRQREGG 53
[Close]
BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: A0A7X9GPB0_9FIRM (Zinc-binding protein n=1 Tax=Desulfitobacterium sp. TaxID=49981 RepID=A0A7X9GPB0_9FIRM)

HSP 1 Score: 72.8 bits (177), Expect = 2.200e-15
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKT 132
            D +L CKDC   F+FT GEQEFYAEKGFE  PQRCR+CR A+K 
Sbjct:    5 DKDLVCKDCGTTFVFTAGEQEFYAEKGFENEPQRCRECRNARKA 48
[Close]
BLAST of jgi.p|Trimin1|140318 vs. uniprot
Match: A0A3C0UGI7_9FIRM (Zinc-binding protein n=2 Tax=Sporomusaceae TaxID=1843490 RepID=A0A3C0UGI7_9FIRM)

HSP 1 Score: 72.4 bits (176), Expect = 3.120e-15
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKK 129
            D  L CKDC C FIFTVGEQ+FYAEKGFE  P RCRDCR+ +K
Sbjct:    5 DKTLKCKDCGCDFIFTVGEQDFYAEKGFENEPVRCRDCRETRK 47
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140318 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CD43_9STRA2.380e-33100.00Putative zinc-binding domain-containing protein (F... [more]
L0FC45_DESDL1.680e-1769.39zf-trcl domain-containing protein n=10 Tax=root Ta... [more]
A0A0J1F7F6_9FIRM4.670e-1771.43zf-trcl domain-containing protein n=2 Tax=Peptococ... [more]
UPI001A8D493B5.570e-1668.75zinc-ribbon domain containing protein n=1 Tax=Para... [more]
A0A2V2EH22_9FIRM1.060e-1564.58Zinc-binding protein n=1 Tax=Clostridiales bacteri... [more]
A0A0J1FUD1_9FIRM1.150e-1572.73zf-trcl domain-containing protein n=2 Tax=Desulfos... [more]
W0EBW6_9FIRM1.590e-1570.45Zinc-binding protein n=1 Tax=Desulfitobacterium me... [more]
A1HT16_9FIRM2.200e-1565.31zf-trcl domain-containing protein n=2 Tax=Sporomus... [more]
A0A7X9GPB0_9FIRM2.200e-1568.18Zinc-binding protein n=1 Tax=Desulfitobacterium sp... [more]
A0A3C0UGI7_9FIRM3.120e-1572.09Zinc-binding protein n=2 Tax=Sporomusaceae TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_35contigContig_35:1037761..1038560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140318|gw1.35.43.1
DescriptionProbable zinc-ribbon domain
COG categoryK
Max annot lvl186801|Clostridia
EggNOG OGsCOG1278@1|root,COG1278@2|Bacteria,1VBBH@1239|Firmicutes,24QK9@186801|Clostridia,262K0@186807|Peptococcaceae
Evalue6.78e-19
Seed ortholog756499.Desde_4065
Hectar predicted targeting categoryother localisation
TranscriptId140640
TrackFilteredModels1
ProteinId140318
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140318gene_7797Tribonema minus UTEX_B_3156 geneContig_35 1037761..1038560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140318Trimin1|140318|gw1.35.43.1Tribonema minus UTEX_B_3156 polypeptideContig_35 1037761..1038560 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7797_2exon_7797_2Tribonema minus UTEX_B_3156 exonContig_35 1037761..1037808 -
exon_7797_1exon_7797_1Tribonema minus UTEX_B_3156 exonContig_35 1038432..1038560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7797CDS_7797Tribonema minus UTEX_B_3156 CDSContig_35 1038432..1038560 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7797 ID=mRNA_7797|Name=jgi.p|Trimin1|140318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_35:1037761..1038560- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACCTGGAGCTATGCTGCAAGGACTGCCAGTGCATATTTATATTTACAGT
AGGCGAGCAGGAGTTTTACGCAGAGAAAGGGTTCGAAGGGCCTCCGCAGC
GGTGTCGGGATTGCAGACAAGCCAAAAAGACCCGTTTTGAAGGCGGCGGC
GGCGGCGGTGCTGCCGCTGGCAGTGGC
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protein sequence of jgi.p|Trimin1|140318

>Trimin1|140318|gw1.35.43.1 ID=Trimin1|140318|gw1.35.43.1|Name=jgi.p|Trimin1|140318|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
DLELCCKDCQCIFIFTVGEQEFYAEKGFEGPPQRCRDCRQAKKTRFEGGG
GGGAAAGSG
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mRNA from alignment at Contig_35:1037761..1038560-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7797 ID=mRNA_7797|Name=jgi.p|Trimin1|140318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=800bp|location=Sequence derived from alignment at Contig_35:1037761..1038560- (Tribonema minus UTEX_B_3156 )
GACCTGGAGCTATGCTGCAAGGACTGCCAGTGCATATTTATATTTACAGT
AGGCGAGCAGGAGTTTTACGCAGAGAAAGGGTTCGAAGGGCCTCCGCAGC
GGTGTCGGGATTGCAGACAAGCCAAAAAGGTGGAGTTTCGGTTCGCCGCC
CGCAAACCATACCGTGCTCATTGCAGCTCCGGCCTGCATGCAGTGAATAT
GAAATCAGACGGCGCTGTGCATCCTGATTGTTTCTTCATGAGGTGCATGT
GGTGCTGTCTCGGCTGCTGTCTGTGTGCGTCGGACATCAAAAACCCGAGT
CGCACTCGGCAGGGGTTTTGTTGCTGCTAATCTGATGGCACCTGGTAGTG
GCAGGCACGCCTGCAGTGCAACCATGATATTTCACGCCAGATTTTCAGCT
TTCTCAGGGGCCATCTCCGTTGGAAGGCTGCCCATGCAACGGCTGCTGGT
GCACTCATGCAGCCCTACACATATTGTCTCCCATCTGCCACTAGACGACA
ACAGAGCACACACCATTCACCAAATGCACCAAACACCCAATTTCACCCTC
ACCTCCGCCCGCGCGTTGTGGCATGCAGATGCCAGCAATCCTGTTGCCAA
TGAGCAATCCTCTTTGCAGCAGCACAGGTACTGCACTCGTCATTCTGTAC
AGCAGCCGCACGCCATGCACAGCGCGCGTCCTGCACCCCACCACAGCTTC
TGACACACGACGCTTGCTGCCGCTGCACGCGTTGCGCCGATGTGCACTGC
AGACCCGTTTTGAAGGCGGCGGCGGCGGCGGTGCTGCCGCTGGCAGTGGC
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Coding sequence (CDS) from alignment at Contig_35:1037761..1038560-

>mRNA_7797 ID=mRNA_7797|Name=jgi.p|Trimin1|140318|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=177bp|location=Sequence derived from alignment at Contig_35:1037761..1038560- (Tribonema minus UTEX_B_3156 )
GACCTGGAGCTATGCTGCAAGGACTGCCAGTGCATATTTATATTTACAGT
AGGCGAGCAGGAGTTTTACGCAGAGAAAGGGTTCGAAGGGCCTCCGCAGC
GGTGTCGGGATTGCAGACAAGCCAAAAAGACCCGTTTTGAAGGCGGCGGC
GGCGGCGGTGCTGCCGCTGGCAGTGGC
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