mRNA_7796 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146432
Unique NamemRNA_7796
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A836CDU5_9STRA (Smr domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU5_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.200e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357
            MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR
Sbjct:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 119          
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: D7G9B6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B6_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 3.390e-26
Identity = 60/118 (50.85%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAAL 354
            MDLHG +LPLAH AVR AL E+ R +     A       L DL +ITG GRGS  A  P++RPEVQRMLT+EFYPPL S T   N GR+VV A  + AW  HN+  +  +++ + AAL
Sbjct:    1 MDLHGHSLPLAHAAVRCALVEVWRFSQREGTA-------LGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAWLDHNVEAKRPVMARLAAAL 111          
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 9.040e-23
Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAAL 354
            MDLHG +LPLAH AVR AL E+ R +     A       L DL +ITG GRGS  A  P++RPEVQRMLT+EFYPPL S T   N GR+VV A  + AW   N+  +  +++ + AAL
Sbjct: 1887 MDLHGHSLPLAHAAVRCALVEVWRFSQREGTA-------LGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAWLDQNVEAKRPVMARLAAAL 1997          
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A7S1BPQ0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPQ0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.530e-19
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357
            +DLHG++  +AH AVR  L  L          T G      D++++TGRG  S   + PVLRPEVQRMLTEEFYPPL +V+ P N G +VVP  DV  W  +   ++ R +  +  A R
Sbjct:   57 LDLHGMSTAVAHAAVREGLAGLQEHTE-----TRGR-----DVLIVTGRGLRSGERLRPVLRPEVQRMLTEEFYPPLSTVSVPGNTGAVVVPGEDVMRWLEYAAEQKRRRMLALADAFR 165          
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: B8C6A4_THAPS (Smr domain-containing protein n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6A4_THAPS)

HSP 1 Score: 92.4 bits (228), Expect = 2.100e-19
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALR-ELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357
            +DLHG++  +AH AVRV+L+ E+ R    A ++  G      D+++ITGRGR S     PV+RPEVQRMLTEEF+PPLG+ + P N G L+VP+ D++AW  +  +++   +  V   LR
Sbjct: 1327 LDLHGMSSAVAHSAVRVSLQQEIMRVQPFAPSS--GVYSWEKDVIIITGRGRRSGERFRPVIRPEVQRMLTEEFFPPLGTSSIPGNMGALLVPSEDISAWLNNQRQKKGERLLFVADVLR 1444          
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A7S1ZJK5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZJK5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.810e-19
Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPL---PDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357
            +DLHG+T  +AH AVRVAL++  + A+  +  + G P       D+V++TG+G+ S   + PVLRPEVQRML EEFYPPL + + P N G L VP+ DV AW     +++   +  +   LR
Sbjct:  891 LDLHGMTTAIAHSAVRVALQKEVQTASWRSTLSEGNPSDNVWDQDVVIVTGKGKKSLQHLRPVLRPEVQRMLQEEFYPPLSTTSIPGNMGALKVPSDDVKAWLTFQRQQKGVRLLAIADVLR 1012          
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A1Z5K940_FISSO (Smr domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K940_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 2.830e-19
Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357
            +DLHG+ LP+AH AVR+A ++     T      P     + DLV++TGRGR S   + P+LRP VQRML EEFYPP+G+ + P N G L + + D+ AW     +++   +  V  AL+
Sbjct: 1055 LDLHGMNLPMAHSAVRIAFQQGLLTDTG-----PNDDESVNDLVIVTGRGRNSALKMRPILRPAVQRMLVEEFYPPIGTTSIPGNMGALRICSEDIRAWLQFQRQQKGARMIEVATALK 1168          
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A1Z5JGL3_FISSO (Smr domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGL3_FISSO)

HSP 1 Score: 91.7 bits (226), Expect = 3.870e-19
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357
            +DLHG+ LP+AH AVR+A ++            P     + DLV++TGRGR S   + P+LRP VQRML EEFYPP+G+ + P N G L + + D+ AW     +++   +  V  AL+
Sbjct: 1051 LDLHGMNLPMAHSAVRIAFQQ-----GLLTDIWPNNDKSVNDLVIVTGRGRNSALKMRPILRPAVQRMLVEEFYPPIGTTSIPGNMGALRISSEDIRAWLEFQRQQKGARMIEVATALK 1164          
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: K0RK24_THAOC (Smr domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RK24_THAOC)

HSP 1 Score: 91.7 bits (226), Expect = 3.890e-19
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357
            +DLHG++  +AH  VRVAL++ + A     A   G      D++++TG GR S     PVLRPEVQRMLTEEF+PP+G+ + P N G L++P +D+ AW  H  ++R   +  V   L+
Sbjct: 1208 LDLHGMSAAVAHAGVRVALQK-EIATAPNDAEVLGR-----DVMIVTGLGRRSGERFRPVLRPEVQRMLTEEFFPPMGTSSVPGNMGALLIPKSDIEAWLEHQRKQRGERLMLVADVLK 1320          
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A7S2RER5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RER5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.180e-19
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLP-------DLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERS-RLISHVG 345
            +DLHG+   LAH AVRVAL++  +A +       GT L          D++++TG+G+ S   + PV+RPEVQRML EEFYPPLG+ + P N G L +P +DV  W  H   ++  RL++  G
Sbjct:   40 IDLHGMNRALAHSAVRVALQQEIQATSWQ---INGTVLENDAIHKLDKDVIIVTGKGKRSAQHLRPVIRPEVQRMLQEEFYPPLGTSSIPGNMGALAIPVSDVKLWLKHQKEQKGIRLLAVAG 159          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A836CDU5_9STRA1.200e-76100.00Smr domain-containing protein (Fragment) n=1 Tax=T... [more]
D7G9B6_ECTSI3.390e-2650.85Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KZI4_9PHAE9.040e-2350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1BPQ0_9STRA1.530e-1942.86Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8C6A4_THAPS2.100e-1944.17Smr domain-containing protein n=2 Tax=Thalassiosir... [more]
A0A7S1ZJK5_9STRA2.810e-1942.62Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5K940_FISSO2.830e-1941.18Smr domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A1Z5JGL3_FISSO3.870e-1940.34Smr domain-containing protein n=1 Tax=Fistulifera ... [more]
K0RK24_THAOC3.890e-1942.02Smr domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2RER5_9STRA4.180e-1942.28Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_35contigContig_35:1032589..1033822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146432|gw1.35.84.1
DescriptionSmr domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E0BI@1|root,2S7SI@2759|Eukaryota
Evalue5.56e-27
Seed ortholog2880.D7G9B6
Hectar predicted targeting categoryother localisation
TranscriptId146754
TrackFilteredModels1
ProteinId146432
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146432gene_7796Tribonema minus UTEX_B_3156 geneContig_35 1032589..1033822 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7796_1exon_7796_1Tribonema minus UTEX_B_3156 exonContig_35 1032589..1032740 +
exon_7796_2exon_7796_2Tribonema minus UTEX_B_3156 exonContig_35 1033618..1033822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7796CDS_7796Tribonema minus UTEX_B_3156 CDSContig_35 1032589..1032740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146432Trimin1|146432|gw1.35.84.1Tribonema minus UTEX_B_3156 polypeptideContig_35 1032589..1033822 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7796 ID=mRNA_7796|Name=jgi.p|Trimin1|146432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=357bp|location=Sequence derived from alignment at Contig_35:1032589..1033822+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTGCACGGCCTCACGCTGCCGCTGGCGCACTGCGCTGTGCGCGT
GGCGCTGCGCGAGCTGGATCGCGCGGCAACGGCGGCGGCGGCGGCAACGC
CGGGCACGCCGCTGCCGCTGCCGGACCTCGTCGTCATCACGGGCCGCGGC
AGGGGCTCCGACAGCGCCGTCGGCCCCGTGCTGCGCCCGGAGGTGCAGCG
CATGCTAACAGAGGAGTTCTATCCGCCACTTGGGAGCGTCACCGCCCCCG
CCAACCCCGGTCGCCTCGTCGTCCCCGCCGCCGACGTCACCGCCTGGGCT
GTACACAATCTGCGCGAGCGCTCGCGCCTCATAAGCCATGTTGGCGCGGC
GCTGCGC
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protein sequence of jgi.p|Trimin1|146432

>Trimin1|146432|gw1.35.84.1 ID=Trimin1|146432|gw1.35.84.1|Name=jgi.p|Trimin1|146432|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRG
RGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWA
VHNLRERSRLISHVGAALR
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mRNA from alignment at Contig_35:1032589..1033822+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7796 ID=mRNA_7796|Name=jgi.p|Trimin1|146432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1234bp|location=Sequence derived from alignment at Contig_35:1032589..1033822+ (Tribonema minus UTEX_B_3156 )
ATGGACCTGCACGGCCTCACGCTGCCGCTGGCGCACTGCGCTGTGCGCGT GGCGCTGCGCGAGCTGGATCGCGCGGCAACGGCGGCGGCGGCGGCAACGC CGGGCACGCCGCTGCCGCTGCCGGACCTCGTCGTCATCACGGGCCGCGGC AGGTGCGTGGTGACGCTCCTCTCTCTCTTGCGGCGCGCTGGCTTGAGGTT TGAGACCCGCGTCGTACCCGATGACGTGGGCGATGTGAACGCATCAAGTG CCAGTTGCTTCTCAACCCTCGAAAAACTTGCAAGCAGGGCGCGTGTAGTA TCTGAGGCGAAGTACTGTTGCATCAAAGGCGAAAGTCGCAACAGAGTGTG CGCAGATTGCGGGCACTGCTGCAGGGCAGTGGTGGGTAGCGGCGGGTAGG CCGGGGGCATCACTGCTGCCGCTGAACGCGGTTGTCATCGCGGGAAAAAC GGCAACGGTCGCCGTGCCTCCACTCGGAGGCGCGTGCTGCTGGCTCTAGG CTGGGGGGGGCTCCGCCAGTGCCACTGGTCCATACCGCTGCGCTCAACCT GCTTCACTTCATCACATGAACATGAGCAAAGCACGGCCATCAAGTGCCTT ATTCTCCTGTGATTTATGCGTGCGCTAGTTAGCTCTTCCATGCCCTGCGG CCAATCATTGGGGCTTTGACAGCGCTATCATCCCCTGCTGCGCCACTGGC AGCGCATGCCAGCCAACAACCTTCGAGGTTATGGCATCAGTGCCACTGAA ACAAGTACGTTGAAGTAAATGAGTTCTCGTGAAAATTTGCTGTGATGCGC CGAGAATCAGTCGAACGCATTCTGAATTGCCGCACATCTCACCCGCGGCT GCTCTGTCGCGACCAGCAGCCGCGTCAATTCAGATCAGCGCGCAGGGGTA CCACTCGTCGTCCTGCGTCTCTCCTTTGATACCCAAAACCGCTCCTTTAT CAGGCAAATCAAACCATGCACGTGACTGCGTCATCCTCACGCGCCGCCAT GCGCCGCACCATTTTTTCACCGCCTGCAGGGGCTCCGACAGCGCCGTCGG CCCCGTGCTGCGCCCGGAGGTGCAGCGCATGCTAACAGAGGAGTTCTATC CGCCACTTGGGAGCGTCACCGCCCCCGCCAACCCCGGTCGCCTCGTCGTC CCCGCCGCCGACGTCACCGCCTGGGCTGTACACAATCTGCGCGAGCGCTC GCGCCTCATAAGCCATGTTGGCGCGGCGCTGCGC
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Coding sequence (CDS) from alignment at Contig_35:1032589..1033822+

>mRNA_7796 ID=mRNA_7796|Name=jgi.p|Trimin1|146432|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_35:1032589..1033822+ (Tribonema minus UTEX_B_3156 )
ATGGACCTGCACGGCCTCACGCTGCCGCTGGCGCACTGCGCTGTGCGCGT
GGCGCTGCGCGAGCTGGATCGCGCGGCAACGGCGGCGGCGGCGGCAACGC
CGGGCACGCCGCTGCCGCTGCCGGACCTCGTCGTCATCACGGGCCGCGGC
AGGGGCTCCGACAGCGCCGTCGGCCCCGTGCTGCGCCCGGAGGTGCAGCG
CATGCTAACAGAGGAGTTCTATCCGCCACTTGGGAGCGTCACCGCCCCCG
CCAACCCCGGTCGCCTCGTCGTCCCCGCCGCCGACGTCACCGCCTGGGCT
GTACACAATCTGCGCGAGCGCTCGCGCCTCATAAGCCATGTTGGCGCGGC
GCTGCGC
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