mRNA_7796 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A836CDU5_9STRA (Smr domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU5_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.200e-76 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR Sbjct: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 119
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: D7G9B6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B6_ECTSI) HSP 1 Score: 105 bits (261), Expect = 3.390e-26 Identity = 60/118 (50.85%), Postives = 75/118 (63.56%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAAL 354 MDLHG +LPLAH AVR AL E+ R + A L DL +ITG GRGS A P++RPEVQRMLT+EFYPPL S T N GR+VV A + AW HN+ + +++ + AAL Sbjct: 1 MDLHGHSLPLAHAAVRCALVEVWRFSQREGTA-------LGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAWLDHNVEAKRPVMARLAAAL 111
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE) HSP 1 Score: 102 bits (253), Expect = 9.040e-23 Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAAL 354 MDLHG +LPLAH AVR AL E+ R + A L DL +ITG GRGS A P++RPEVQRMLT+EFYPPL S T N GR+VV A + AW N+ + +++ + AAL Sbjct: 1887 MDLHGHSLPLAHAAVRCALVEVWRFSQREGTA-------LGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAWLDQNVEAKRPVMARLAAAL 1997
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A7S1BPQ0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPQ0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.530e-19 Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357 +DLHG++ +AH AVR L L T G D++++TGRG S + PVLRPEVQRMLTEEFYPPL +V+ P N G +VVP DV W + ++ R + + A R Sbjct: 57 LDLHGMSTAVAHAAVREGLAGLQEHTE-----TRGR-----DVLIVTGRGLRSGERLRPVLRPEVQRMLTEEFYPPLSTVSVPGNTGAVVVPGEDVMRWLEYAAEQKRRRMLALADAFR 165
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: B8C6A4_THAPS (Smr domain-containing protein n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6A4_THAPS) HSP 1 Score: 92.4 bits (228), Expect = 2.100e-19 Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALR-ELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357 +DLHG++ +AH AVRV+L+ E+ R A ++ G D+++ITGRGR S PV+RPEVQRMLTEEF+PPLG+ + P N G L+VP+ D++AW + +++ + V LR Sbjct: 1327 LDLHGMSSAVAHSAVRVSLQQEIMRVQPFAPSS--GVYSWEKDVIIITGRGRRSGERFRPVIRPEVQRMLTEEFFPPLGTSSIPGNMGALLVPSEDISAWLNNQRQKKGERLLFVADVLR 1444
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A7S1ZJK5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZJK5_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.810e-19 Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPL---PDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357 +DLHG+T +AH AVRVAL++ + A+ + + G P D+V++TG+G+ S + PVLRPEVQRML EEFYPPL + + P N G L VP+ DV AW +++ + + LR Sbjct: 891 LDLHGMTTAIAHSAVRVALQKEVQTASWRSTLSEGNPSDNVWDQDVVIVTGKGKKSLQHLRPVLRPEVQRMLQEEFYPPLSTTSIPGNMGALKVPSDDVKAWLTFQRQQKGVRLLAIADVLR 1012
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A1Z5K940_FISSO (Smr domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K940_FISSO) HSP 1 Score: 92.0 bits (227), Expect = 2.830e-19 Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357 +DLHG+ LP+AH AVR+A ++ T P + DLV++TGRGR S + P+LRP VQRML EEFYPP+G+ + P N G L + + D+ AW +++ + V AL+ Sbjct: 1055 LDLHGMNLPMAHSAVRIAFQQGLLTDTG-----PNDDESVNDLVIVTGRGRNSALKMRPILRPAVQRMLVEEFYPPIGTTSIPGNMGALRICSEDIRAWLQFQRQQKGARMIEVATALK 1168
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A1Z5JGL3_FISSO (Smr domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGL3_FISSO) HSP 1 Score: 91.7 bits (226), Expect = 3.870e-19 Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357 +DLHG+ LP+AH AVR+A ++ P + DLV++TGRGR S + P+LRP VQRML EEFYPP+G+ + P N G L + + D+ AW +++ + V AL+ Sbjct: 1051 LDLHGMNLPMAHSAVRIAFQQ-----GLLTDIWPNNDKSVNDLVIVTGRGRNSALKMRPILRPAVQRMLVEEFYPPIGTTSIPGNMGALRISSEDIRAWLEFQRQQKGARMIEVATALK 1164
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: K0RK24_THAOC (Smr domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RK24_THAOC) HSP 1 Score: 91.7 bits (226), Expect = 3.890e-19 Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERSRLISHVGAALR 357 +DLHG++ +AH VRVAL++ + A A G D++++TG GR S PVLRPEVQRMLTEEF+PP+G+ + P N G L++P +D+ AW H ++R + V L+ Sbjct: 1208 LDLHGMSAAVAHAGVRVALQK-EIATAPNDAEVLGR-----DVMIVTGLGRRSGERFRPVLRPEVQRMLTEEFFPPMGTSSVPGNMGALLIPKSDIEAWLEHQRKQRGERLMLVADVLK 1320
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Match: A0A7S2RER5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RER5_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 4.180e-19 Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 1 MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLP-------DLVVITGRGRGSDSAVGPVLRPEVQRMLTEEFYPPLGSVTAPANPGRLVVPAADVTAWAVHNLRERS-RLISHVG 345 +DLHG+ LAH AVRVAL++ +A + GT L D++++TG+G+ S + PV+RPEVQRML EEFYPPLG+ + P N G L +P +DV W H ++ RL++ G Sbjct: 40 IDLHGMNRALAHSAVRVALQQEIQATSWQ---INGTVLENDAIHKLDKDVIIVTGKGKRSAQHLRPVIRPEVQRMLQEEFYPPLGTSSIPGNMGALAIPVSDVKLWLKHQKEQKGIRLLAVAG 159 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146432 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7796 ID=mRNA_7796|Name=jgi.p|Trimin1|146432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=357bp|location=Sequence derived from alignment at Contig_35:1032589..1033822+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACCTGCACGGCCTCACGCTGCCGCTGGCGCACTGCGCTGTGCGCGTback to top protein sequence of jgi.p|Trimin1|146432 >Trimin1|146432|gw1.35.84.1 ID=Trimin1|146432|gw1.35.84.1|Name=jgi.p|Trimin1|146432|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp MDLHGLTLPLAHCAVRVALRELDRAATAAAAATPGTPLPLPDLVVITGRGback to top mRNA from alignment at Contig_35:1032589..1033822+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7796 ID=mRNA_7796|Name=jgi.p|Trimin1|146432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1234bp|location=Sequence derived from alignment at Contig_35:1032589..1033822+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_35:1032589..1033822+ >mRNA_7796 ID=mRNA_7796|Name=jgi.p|Trimin1|146432|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_35:1032589..1033822+ (Tribonema minus UTEX_B_3156 )back to top |