mRNA_7756 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147088
Unique NamemRNA_7756
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: A0A835YUV9_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.790e-32
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ 177
            SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ
Sbjct:    1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ 59
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: A0A835YTV5_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.070e-13
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   10 MKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRV 153
            M R  LE LF+RPV +AA+ LGVS+TI+KRLCRR+GI KWP+R L+R+
Sbjct:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRI 48
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: A0A835YN33_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN33_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.540e-13
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQ 156
            SK M R  LE+LF+RPV  AA+ LGVS+TI+KRLCRR+GI KWP+R L+R++
Sbjct:   38 SKHMTRAKLEALFDRPVEHAARALGVSSTIIKRLCRRHGIPKWPYRQLLRLE 89
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: L1IMF9_GUITC (RWP-RK domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IMF9_GUITC)

HSP 1 Score: 61.2 bits (147), Expect = 2.340e-10
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ 177
            +K  K E L   F+ P    AKELG+  T +K+LCR YGI +WPFR L  +QRT+++VQ
Sbjct:    4 TKDFKLEELSKYFHMPEKAVAKELGICLTSLKKLCRSYGITRWPFRKLKSIQRTLAKVQ 62
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: A0A7S0VA07_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VA07_9CRYP)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-9
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ 177
            +K +K E L   F+ P    AKELG+  T +K+LCR YGI +WPFR L  ++RTM +VQ
Sbjct:   21 NKDVKLEELSKYFHLPEKAVAKELGICLTSLKKLCRSYGITRWPFRKLKSLERTMKKVQ 79
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: L1IUU2_GUITC (RWP-RK domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IUU2_GUITC)

HSP 1 Score: 58.5 bits (140), Expect = 1.100e-9
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ 177
            +K +K + L   F+ P    AKELG+  T +K+LCR YGI +WPFR L  ++RTM +VQ
Sbjct:   14 NKEVKLDELSKYFHLPEKAVAKELGICLTSLKKLCRSYGITRWPFRKLKSLERTMRKVQ 72
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: L1INA3_GUITC (RWP-RK domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1INA3_GUITC)

HSP 1 Score: 58.2 bits (139), Expect = 1.170e-9
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   25 LESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ 177
            L   FN P    AKELG+  T +K+LCR YGI +WPFR L  +QRTM +V+
Sbjct:    4 LSKFFNLPEKAVAKELGICLTSLKKLCRSYGITRWPFRKLKSLQRTMKKVE 54
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: A0A6T8AAV7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T8AAV7_9CRYP)

HSP 1 Score: 57.8 bits (138), Expect = 2.630e-9
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ 177
            +K  K E L   F+ P    AKELG+  T +K+LCR YGI +WPFR L  + RT+++ Q
Sbjct:    4 TKEFKLEELSKYFHMPEKAVAKELGICLTSLKKLCRSYGITRWPFRKLKSIHRTLAKAQ 62
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: A0A835YW93_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW93_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.630e-9
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   25 LESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ 177
            LE  +N P+T AAK+L VS T++K+LCRRYGIQ+WP R +  + + M + Q
Sbjct:   17 LEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQ 67
[Close]
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Match: A0A7S0UCX4_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UCX4_HEMAN)

HSP 1 Score: 58.2 bits (139), Expect = 3.140e-9
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   19 ETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMSEVQ 177
            E L   F  P  + AKELG+  T +K++CR +G+ +WPFR L  +QRTM++VQ
Sbjct:   58 EALSKYFTMPEKQVAKELGICLTSLKKMCRSFGVTRWPFRKLKSIQRTMAKVQ 110
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147088 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUV9_9STRA2.790e-32100.00RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A835YTV5_9STRA1.070e-1364.58RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
A0A835YN33_9STRA9.540e-1363.46RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
L1IMF9_GUITC2.340e-1049.15RWP-RK domain-containing protein n=1 Tax=Guillardi... [more]
A0A7S0VA07_9CRYP1.050e-949.15Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1IUU2_GUITC1.100e-947.46RWP-RK domain-containing protein n=1 Tax=Guillardi... [more]
L1INA3_GUITC1.170e-952.94RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A6T8AAV7_9CRYP2.630e-945.76Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A835YW93_9STRA2.630e-950.98RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S0UCX4_HEMAN3.140e-947.17Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_35contigContig_35:674890..675066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147088|gw1.35.90.1
GOsGO:0003674,GO:0003700,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051302,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
DescriptionRWP-RK domain-containing protein
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGs28K91@1|root,2QSPQ@2759|Eukaryota,37RG9@33090|Viridiplantae,3GK3P@35493|Streptophyta,3HU55@3699|Brassicales
Evalue6.77e-10
Seed ortholog90675.XP_010480535.1
Hectar predicted targeting categoryother localisation
TranscriptId147410
TrackFilteredModels1
ProteinId147088
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147088gene_7756Tribonema minus UTEX_B_3156 geneContig_35 674890..675066 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7756_1exon_7756_1Tribonema minus UTEX_B_3156 exonContig_35 674890..675066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7756CDS_7756Tribonema minus UTEX_B_3156 CDSContig_35 674890..675066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147088Trimin1|147088|gw1.35.90.1Tribonema minus UTEX_B_3156 polypeptideContig_35 674890..675066 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7756 ID=mRNA_7756|Name=jgi.p|Trimin1|147088|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_35:674890..675066+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCCAAGAGCATGAAGCGCGAGACCCTGGAGAGTTTGTTCAACAGGCCTGT
CACCGAGGCAGCCAAGGAGCTCGGCGTATCCACCACAATCGTCAAGCGGC
TGTGCCGACGTTATGGCATCCAGAAGTGGCCATTCAGGAGCTTGGTTCGC
GTGCAGCGCACCATGTCGGAAGTGCAA
back to top

protein sequence of jgi.p|Trimin1|147088

>Trimin1|147088|gw1.35.90.1 ID=Trimin1|147088|gw1.35.90.1|Name=jgi.p|Trimin1|147088|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVR
VQRTMSEVQ
back to top

mRNA from alignment at Contig_35:674890..675066+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7756 ID=mRNA_7756|Name=jgi.p|Trimin1|147088|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_35:674890..675066+ (Tribonema minus UTEX_B_3156 )
TCCAAGAGCATGAAGCGCGAGACCCTGGAGAGTTTGTTCAACAGGCCTGT
CACCGAGGCAGCCAAGGAGCTCGGCGTATCCACCACAATCGTCAAGCGGC
TGTGCCGACGTTATGGCATCCAGAAGTGGCCATTCAGGAGCTTGGTTCGC
GTGCAGCGCACCATGTCGGAAGTGCAA
back to top

Coding sequence (CDS) from alignment at Contig_35:674890..675066+

>mRNA_7756 ID=mRNA_7756|Name=jgi.p|Trimin1|147088|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=177bp|location=Sequence derived from alignment at Contig_35:674890..675066+ (Tribonema minus UTEX_B_3156 )
TCCAAGAGCATGAAGCGCGAGACCCTGGAGAGTTTGTTCAACAGGCCTGT
CACCGAGGCAGCCAAGGAGCTCGGCGTATCCACCACAATCGTCAAGCGGC
TGTGCCGACGTTATGGCATCCAGAAGTGGCCATTCAGGAGCTTGGTTCGC
GTGCAGCGCACCATGTCGGAAGTGCAA
back to top