mRNA_775 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156886
Unique NamemRNA_775
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A836CIF4_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF4_9STRA)

HSP 1 Score: 327 bits (837), Expect = 1.660e-113
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 
Query:    1 MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRPNGRRSRCRPGVQGRIDLLSKVVCHHKFCTCAFRIYASIEHFEAIASACGNCANVTFFSVTISMHWLRLCSINAIYYIGSV 459
            MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRPNGRRSRCRPGVQGRIDLLSKVVCHHKFCTCAFRIYASIEHFEAIASACGNCANVTFFSVTISMHWLRLCSINAIYYIGSV
Sbjct:    1 MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRPNGRRSRCRPGVQGRIDLLSKVVCHHKFCTCAFRIYASIEHFEAIASACGNCANVTFFSVTISMHWLRLCSINAIYYIGSV 153
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BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A835ZCR8_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 9.510e-34
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:   13 CYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRP 219
            CY IVNEQGRTYVGYTV PKRRLRQHNG + GGAR+TAGKGPWR+  VLTSE+FD+ K LS EWHLK P
Sbjct:    2 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 70
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BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A836CN45_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN45_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.150e-27
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    1 MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRPN---GRRSRCRPGVQGRIDLLSKVVCHHKF 300
            M+H+CY + N+ GRTY+GYTV P RRLRQHN  I GGA++T G+GPWRF +V+   +F + + LS EWH+K P+   GRR     G Q R + L       KF
Sbjct:    1 MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHPSKGIGRR-----GAQARTEALKCAFLRSKF 98
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BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A836CJ24_9STRA (GIY-YIG domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ24_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.280e-25
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRP 219
            M+H+CY + NE GRTYVGYTV P RR+RQHN  I GGA++T G+GPWRF +V+    + +   LS EWH+K P
Sbjct:    1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 73
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BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A6C0CV58_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CV58_9ZZZZ)

HSP 1 Score: 92.8 bits (229), Expect = 3.310e-21
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:    1 MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHK-GLSCEWHLKRPNGRRSRCRP--GVQGRIDLLSKVVCHHKFCTCAFRI-YASIEHFE 345
            M ++CY I N   RTY GYTV   RRL+QHNGVI GGA++T G+GPW F  +LTSE +D     +  EW +K P  +R R R   GV GR++    V  H +   C   + Y   E+ E
Sbjct:    1 MVYYCYVIGNANDRTYNGYTVNLTRRLKQHNGVIQGGAKATRGRGPWEFVLILTSECWDCISVAMQHEWSIKYPTRKRPRPREFNGVLGRLNSFVHVFEHMEKIGCEKIVCYVKEEYLE 119
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BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A6C0BQA1_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BQA1_9ZZZZ)

HSP 1 Score: 90.5 bits (223), Expect = 2.630e-20
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:    1 MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDS-HKGLSCEWHLKRPNGRRSRCRP--GVQGRIDLLSKVVCHHKFCTC 309
            M+++CY I NE  RTY GYT+  +RRL+QHNG++ GGA+ST  +GPW F  V+TS  +D     +  EW +K P  RR R +   G  GR+  L KV  H +   C
Sbjct:    1 MSYYCYIIYNENDRTYNGYTINLQRRLKQHNGILKGGAKSTHNRGPWSFLCVITSSCWDCISTAMQHEWSIKYPTRRRPRPKEYNGKLGRLLSLEKVFEHMQRLRC 106
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BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A497PCX4_9ARCH (GIY-YIG domain-containing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497PCX4_9ARCH)

HSP 1 Score: 82.8 bits (203), Expect = 2.530e-17
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    4 THFCYTIVNEQG-RTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRP-NGRRSRCRPGVQGRIDLLSKVV 285
            TH+CY + N+   +TY GYTV   +RLRQHNG ITGGARST     W++  +++    D    L CEW +K+P N RR+R   G +GRI  L+ V+
Sbjct:    8 THYCYILQNDDNQKTYNGYTVNSTKRLRQHNGEITGGARSTKCSNTWKYICIVSGFP-DKINALQCEWRIKKPFNKRRTREYCGPEGRIKGLNHVL 102
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BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A6C0BFV4_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BFV4_9ZZZZ)

HSP 1 Score: 81.6 bits (200), Expect = 7.480e-17
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:   10 FCYTIVN-EQGRTYVGYTVLPKRRLRQHNGVITGGARSTA------GKGPWRFAFVLTSESFDSHKGLSCEWHLKRPNGRRSRCRP--GVQGRIDLLSKVVCHHKFCTCAFRIYAS---IEHFE 345
            +CY + N +  +TY GYTV  K+R+RQHN +I GGA+ T       G   W++  ++T +    H+ LS EWH++ P G + R     G  GRI  +  V+C  KF    + IY     I HFE
Sbjct:    5 YCYILYNVKDNKTYNGYTVDLKKRIRQHNNIIKGGAKYTTTESKQYGSNHWKYLCIVTCDMLTKHEALSLEWHIRYPTGVKPRPSEYKGPLGRIKSIYDVLCKDKFKDKLWNIYIDESYIPHFE 128
[Close]
BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A6C0EH05_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EH05_9ZZZZ)

HSP 1 Score: 82.0 bits (201), Expect = 1.150e-16
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    4 THFCYTIV---NEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGK--GPWRFAFVLTSESFDS-HKGLSCEWHLKRPNGRRSRCR--PGVQGRIDLLSKVVCHHK 297
            T++CY +    N  G+TY GYT   KRRLRQHNG I GGA +T  K  G W F  VLTS S+ S  + ++CEW+ + P  ++ R +   G +GRI+ LS++  H K
Sbjct:   36 TYYCYFLGQHNNWNGQTYNGYTTNLKRRLRQHNGEIKGGAWATTAKDNGSWSFIAVLTSSSWQSISRAMACEWNCRYPTRKKPRPKIYAGSEGRINSLSEIFTHIK 141
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BLAST of jgi.p|Trimin1|156886 vs. uniprot
Match: A0A2H4UTI6_9VIRU (Putative GIY-YIG domain containing endonuclease n=1 Tax=Bodo saltans virus TaxID=2024608 RepID=A0A2H4UTI6_9VIRU)

HSP 1 Score: 80.5 bits (197), Expect = 6.860e-15
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    4 THFCYTIVNE----QGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRPNGRRSRCRP--GVQGRIDLLSKVV 285
            T FCY + N     +  TY G T   K+RL QHN +ITGGA+ T  KG W +  ++T   FD +K LS EW LK PNG++++     G++GRI  L K++
Sbjct:    3 TFFCYILFNTVEKYKNLTYCGSTNNLKKRLLQHNSIITGGAKYTKNKGKWEY--LITIGLFDKNKALSLEWKLKHPNGKKNKSSKYCGIEGRILSLQKIL 100
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156886 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIF4_9STRA1.660e-113100.00GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZCR8_9STRA9.510e-3478.26GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A836CN45_9STRA7.150e-2748.54GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CJ24_9STRA2.280e-2556.16GIY-YIG domain-containing protein (Fragment) n=2 T... [more]
A0A6C0CV58_9ZZZZ3.310e-2143.70GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A6C0BQA1_9ZZZZ2.630e-2044.34GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A497PCX4_9ARCH2.530e-1745.83GIY-YIG domain-containing protein n=1 Tax=Candidat... [more]
A0A6C0BFV4_9ZZZZ7.480e-1737.10GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A6C0EH05_9ZZZZ1.150e-1644.34GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A2H4UTI6_9VIRU6.860e-1543.00Putative GIY-YIG domain containing endonuclease n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1393986..1394447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156886|e_gw1.2.285.1
BRITEko00000,ko00001,ko01000,ko03041,ko03400
KEGG Pathwayko03460,ko04212,map03460,map04212
KEGG koko:K13113,ko:K15078
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000706,GO:0000712,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0001325,GO:0002164,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007275,GO:0008150,GO:0008152,GO:0008821,GO:0009791,GO:0009892,GO:0009893,GO:0009987,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010792,GO:0010833,GO:0016043,GO:0016787,GO:0016788,GO:0016888,GO:0016889,GO:0016893,GO:0016894,GO:0017108,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022414,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033557,GO:0034641,GO:0035825,GO:0036297,GO:0040019,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045002,GO:0045132,GO:0045934,GO:0045935,GO:0045995,GO:0046483,GO:0048256,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051241,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060249,GO:0060255,GO:0061062,GO:0061064,GO:0061820,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090656,GO:0090657,GO:0090737,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1903046,GO:1904356,GO:1904357,GO:1904429,GO:1904431,GO:2000026,GO:2001251,GO:2001252
Preferred nameSLX1A
Description5'-flap endonuclease activity
COG categoryL
Max annot lvl33208|Metazoa
EggNOG OGsKOG3005@1|root,KOG3005@2759|Eukaryota,39TYN@33154|Opisthokonta,3BGAD@33208|Metazoa,3CZR0@33213|Bilateria
Evalue6e-12
Seed ortholog6183.Smp_106040.1
Hectar predicted targeting categoryother localisation
TranscriptId157208
TrackFilteredModels1
ProteinId156886
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156886gene_775Tribonema minus UTEX_B_3156 geneContig_2 1393986..1394447 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_775_1exon_775_1Tribonema minus UTEX_B_3156 exonContig_2 1393986..1394447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_775CDS_775Tribonema minus UTEX_B_3156 CDSContig_2 1393986..1394447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156886Trimin1|156886|e_gw1.2.285.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1393986..1394447 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_775 ID=mRNA_775|Name=jgi.p|Trimin1|156886|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_2:1393986..1394447- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACACATTTTTGCTATACCATCGTGAACGAGCAGGGACGCACGTATGT
GGGCTACACTGTGTTACCAAAAAGGCGTTTGAGGCAGCACAATGGCGTAA
TAACAGGCGGAGCTAGGAGTACGGCAGGCAAAGGGCCGTGGAGATTTGCC
TTTGTTTTGACATCTGAATCATTTGACAGTCACAAAGGCCTCAGCTGTGA
GTGGCACCTAAAGCGGCCTAACGGCCGAAGATCGAGATGCCGTCCGGGCG
TACAGGGTAGGATTGACTTGTTGAGCAAAGTCGTGTGTCACCACAAGTTT
TGCACGTGTGCTTTCCGAATTTATGCATCGATTGAACACTTTGAAGCGAT
AGCATCTGCGTGTGGCAACTGTGCCAATGTGACTTTCTTCAGTGTGACGA
TTTCGATGCACTGGCTTAGATTGTGTTCCATCAATGCAATTTATTATATT
GGTTCTGTTTAG
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protein sequence of jgi.p|Trimin1|156886

>Trimin1|156886|e_gw1.2.285.1 ID=Trimin1|156886|e_gw1.2.285.1|Name=jgi.p|Trimin1|156886|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp
MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFA
FVLTSESFDSHKGLSCEWHLKRPNGRRSRCRPGVQGRIDLLSKVVCHHKF
CTCAFRIYASIEHFEAIASACGNCANVTFFSVTISMHWLRLCSINAIYYI
GSV*
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mRNA from alignment at Contig_2:1393986..1394447-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_775 ID=mRNA_775|Name=jgi.p|Trimin1|156886|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_2:1393986..1394447- (Tribonema minus UTEX_B_3156 )
ATGACACATTTTTGCTATACCATCGTGAACGAGCAGGGACGCACGTATGT
GGGCTACACTGTGTTACCAAAAAGGCGTTTGAGGCAGCACAATGGCGTAA
TAACAGGCGGAGCTAGGAGTACGGCAGGCAAAGGGCCGTGGAGATTTGCC
TTTGTTTTGACATCTGAATCATTTGACAGTCACAAAGGCCTCAGCTGTGA
GTGGCACCTAAAGCGGCCTAACGGCCGAAGATCGAGATGCCGTCCGGGCG
TACAGGGTAGGATTGACTTGTTGAGCAAAGTCGTGTGTCACCACAAGTTT
TGCACGTGTGCTTTCCGAATTTATGCATCGATTGAACACTTTGAAGCGAT
AGCATCTGCGTGTGGCAACTGTGCCAATGTGACTTTCTTCAGTGTGACGA
TTTCGATGCACTGGCTTAGATTGTGTTCCATCAATGCAATTTATTATATT
GGTTCTGTTTAG
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Coding sequence (CDS) from alignment at Contig_2:1393986..1394447-

>mRNA_775 ID=mRNA_775|Name=jgi.p|Trimin1|156886|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_2:1393986..1394447- (Tribonema minus UTEX_B_3156 )
ATGACACATTTTTGCTATACCATCGTGAACGAGCAGGGACGCACGTATGT
GGGCTACACTGTGTTACCAAAAAGGCGTTTGAGGCAGCACAATGGCGTAA
TAACAGGCGGAGCTAGGAGTACGGCAGGCAAAGGGCCGTGGAGATTTGCC
TTTGTTTTGACATCTGAATCATTTGACAGTCACAAAGGCCTCAGCTGTGA
GTGGCACCTAAAGCGGCCTAACGGCCGAAGATCGAGATGCCGTCCGGGCG
TACAGGGTAGGATTGACTTGTTGAGCAAAGTCGTGTGTCACCACAAGTTT
TGCACGTGTGCTTTCCGAATTTATGCATCGATTGAACACTTTGAAGCGAT
AGCATCTGCGTGTGGCAACTGTGCCAATGTGACTTTCTTCAGTGTGACGA
TTTCGATGCACTGGCTTAGATTGTGTTCCATCAATGCAATTTATTATATT
GGTTCTGTTTAG
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