mRNA_7681 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170749
Unique NamemRNA_7681
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: A0A836C8Y8_9STRA (Putative GTPase activating protein for Arf-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y8_9STRA)

HSP 1 Score: 286 bits (733), Expect = 7.720e-98
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
Query:    1 MASEDRRIRALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYATTEDLAREAEEQARRASARARNEEAR 441
            MASEDRRIRALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYATTEDLAREAEEQARRASARARNEEAR
Sbjct:    1 MASEDRRIRALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYATTEDLAREAEEQARRASARARNEEAR 147          
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: D8LD15_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD15_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 6.960e-49
Identity = 77/124 (62.10%), Postives = 95/124 (76.61%), Query Frame = 1
Query:   31 LKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYATTEDLAREAEEQA 402
            L+  QK   NKRCADCTERLP +I+ DF TFVCTACSGIHREFSHR+KS+SLA F+++EV A++ GGN  SN L++A+Y P  DLPEP+G    K REFIR KY +KRWY T EDLA + + +A
Sbjct:   20 LRACQKEPGNKRCADCTERLPQWIISDFNTFVCTACSGIHREFSHRVKSISLATFSEEEVAAVKAGGNETSNKLYMARYRPGHDLPEPEGGRAAKHREFIRTKYVDKRWYGTPEDLANDRQREA 143          
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: A0A6H5KW83_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW83_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 9.280e-48
Identity = 82/134 (61.19%), Postives = 103/134 (76.87%), Query Frame = 1
Query:   31 LKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYATTEDLAREAEEQARRASARARNE 432
            L+  QK   NKRCADCTERLP YI+ DF TFVCTACSGIHREFSHR+KS+SLA F+++EV A++ GGN ASN L++A+Y P  DLPEP+G    K REFIR KY +KRWY T EDLA++ + +A R  +RA+ +
Sbjct:   20 LRACQKEPGNKRCADCTERLPQYIISDFNTFVCTACSGIHREFSHRVKSISLATFSEEEVAAVKAGGNEASNKLYMARYRPGHDLPEPEGGRAAKHREFIRTKYVDKRWYGTPEDLAQDRQREAEREESRAKRD 153          
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: A0A7S1LNS8_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LNS8_ALECA)

HSP 1 Score: 131 bits (329), Expect = 4.870e-36
Identity = 63/113 (55.75%), Postives = 82/113 (72.57%), Query Frame = 1
Query:   19 RIRALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRW 357
            RIRA + ++K   NK+CADC E  P YI L F TFVCT CSG+HREFSH++K +S++ +T +EV  I +GGN  + D WLA++DP RD PEPD S   K R+FIRMKY ++RW
Sbjct:   12 RIRAFQRSEKA--NKKCADCKEVGPTYICLSFTTFVCTTCSGLHREFSHKVKGISVSKWTPEEVEEIERGGNARAADKWLARWDP-RDYPEPDSSDQSKCRDFIRMKYVDRRW 121          
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: A0A0M0K2F0_9EUKA (Arf gtpase activating protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K2F0_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 7.740e-36
Identity = 63/115 (54.78%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   25 RALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYATT 369
            R LK+ QK+ ENK C DC  R   Y+VL+F TFVCTACSGIHRE  H+IKSV ++ FT DE++A+  GGN  +  +W+AKYD  RD   P     EK R F++ KYQEKRWY+ T
Sbjct:   13 RILKECQKKPENKSCFDCMGRGNQYVVLNFNTFVCTACSGIHREMQHKIKSVGMSTFTTDEIKAVDAGGNDKAQKMWMAKYDA-RDGAVPAEGETEKLRAFLKRKYQEKRWYSET 126          
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: A0A7S3BW33_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BW33_9EUKA)

HSP 1 Score: 128 bits (322), Expect = 3.710e-35
Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = 1
Query:   25 RALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYA 363
            R LK+ QKR EN++C DCT R   Y+VLDF TFVCT CSGIHRE  HRIKSV ++ F+ DE++ + K GN  +  +W+A Y+P  D+  P      K REFI+MKY +KRWY+
Sbjct:    2 RLLKEIQKRPENRKCFDCTGRANQYVVLDFNTFVCTTCSGIHRELQHRIKSVGMSTFSTDEIKTLDKMGNAVATSIWMATYNPS-DMAIPTEDDHPKIREFIKMKYHKKRWYS 113          
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: A0A4D9DD40_9STRA (Arf-GAP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD40_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.390e-34
Identity = 64/117 (54.70%), Postives = 88/117 (75.21%), Query Frame = 1
Query:   10 EDRRIRALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWY 360
            E+R +RA+KD  K   NKRCADCTE+LP Y+ L F TF+CTACSGIHREFSHR+KS+SL+ F+ +EV+A++ GGN A   ++LA+++P RD  EP      + R++IR KY E+RW+
Sbjct:    9 EERLLRAVKDLSKLPGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRVKSISLSTFSLEEVKALKDGGNEACAAMYLARWEP-RDYAEPQAGDEHRIRDWIRHKYVERRWH 124          
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: A0A7S1APG6_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1APG6_NOCSC)

HSP 1 Score: 127 bits (319), Expect = 2.290e-34
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 1
Query:   19 RIRALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRW 357
            RIRA +   K   NKRCADCTE  P Y+ + F TFVCT CSG+HREFSH++K +S++ F+ +EV  + +GGN  + D+W+A+++P RD PEPD S   K REF+R KY +K+W
Sbjct:   12 RIRAFQRGDKA--NKRCADCTELGPTYVCMTFGTFVCTTCSGLHREFSHKVKGISVSKFSVEEVEELERGGNAKAFDIWMARWEP-RDCPEPDNSEQGKVREFLRQKYVDKKW 121          
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: A0A7S2KRS9_9DINO (Hypothetical protein (Fragment) n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2KRS9_9DINO)

HSP 1 Score: 126 bits (317), Expect = 1.250e-33
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   19 RIRALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYATTEDLAREAEEQARR 408
            RIRA + + K   NKRCADCTE  P Y+ L + TFVCT CSG+HREFSH+IK +S++ +T +EV  I +GGN  + + +LA++DP RD  EPD S   + REFIRMKY ++RW    +D  R+ + + RR
Sbjct:   12 RIRAFQRSDKA--NKRCADCTEVGPTYVCLSYYTFVCTTCSGLHREFSHKIKGISISKWTPEEVDEIEQGGNAKAAEKFLARWDP-RDFAEPDSSDPNRCREFIRMKYIDRRWTNRGDDSGRDRDAKPRR 138          
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Match: A0A0M0K1I0_9EUKA (Putative ADP-ribosylation factor gtpase-activating protein agd14-like protein n=2 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1I0_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 3.340e-33
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   25 RALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKR 354
            R LK+ QK+ ENK C DC  R   Y+VL+F TFVCTACSGIHRE  H+IKSV ++ FT DE++A+  GGN  +  +W+AKYD  RD   P    VEK R F++ KYQEKR
Sbjct:   13 RILKECQKKPENKSCFDCMGRGNQYVVLNFNTFVCTACSGIHREMQHKIKSVGMSTFTTDEIKAVDAGGNDKAQKMWMAKYDA-RDGAVPAEGEVEKLRAFLKRKYQEKR 121          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170749 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8Y8_9STRA7.720e-98100.00Putative GTPase activating protein for Arf-domain-... [more]
D8LD15_ECTSI6.960e-4962.10Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KW83_9PHAE9.280e-4861.19Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1LNS8_ALECA4.870e-3655.75Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A0M0K2F0_9EUKA7.740e-3654.78Arf gtpase activating protein n=1 Tax=Chrysochromu... [more]
A0A7S3BW33_9EUKA3.710e-3553.10Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A4D9DD40_9STRA1.390e-3454.70Arf-GAP domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S1APG6_NOCSC2.290e-3452.21Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7S2KRS9_9DINO1.250e-3350.00Hypothetical protein (Fragment) n=2 Tax=Brandtodin... [more]
A0A0M0K1I0_9EUKA3.340e-3355.45Putative ADP-ribosylation factor gtpase-activating... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:650298..651009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170749|e_gw1.75.41.1
DescriptionGTPase activator activity
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5347@1|root,KOG0702@2759|Eukaryota
Evalue1.14e-49
Seed ortholog2880.D8LD15
Hectar predicted targeting categoryother localisation
TranscriptId171071
TrackFilteredModels1
ProteinId170749
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170749gene_7681Tribonema minus UTEX_B_3156 geneContig_75 650298..651009 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7681_1exon_7681_1Tribonema minus UTEX_B_3156 exonContig_75 650298..650560 +
exon_7681_2exon_7681_2Tribonema minus UTEX_B_3156 exonContig_75 650829..651009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7681CDS_7681Tribonema minus UTEX_B_3156 CDSContig_75 650298..650560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170749Trimin1|170749|e_gw1.75.41.1Tribonema minus UTEX_B_3156 polypeptideContig_75 650298..651009 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7681 ID=mRNA_7681|Name=jgi.p|Trimin1|170749|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=444bp|location=Sequence derived from alignment at Contig_75:650298..651009+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGGAAGACAGGAGAATAAGGGCGTTGAAAGACGCCCAGAAGCG
GGAGGAGAACAAGCGGTGTGCGGATTGCACGGAACGCCTGCCCAACTACA
TCGTCCTGGATTTCAAGACTTTCGTCTGCACAGCTTGCTCTGGCATCCAT
CGAGAGTTCTCGCACAGGATCAAGTCCGTTTCGCTGGCGAACTTCACGGA
CGACGAAGTCAGGGCCATCCGCAAGGGAGGCAACCGCGCTTCCAACGACC
TGTGGCTGGCCAAGTATGACCCCGACAGGGACCTGCCGGAGCCGGATGGC
AGCAGCGTGGAGAAACGGCGTGAGTTCATTCGCATGAAGTACCAGGAGAA
GCGGTGGTACGCCACCACGGAGGATCTGGCTAGGGAGGCAGAGGAGCAGG
CACGCAGGGCTAGCGCACGTGCCAGGAATGAGGAGGCCAGGTGA
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protein sequence of jgi.p|Trimin1|170749

>Trimin1|170749|e_gw1.75.41.1 ID=Trimin1|170749|e_gw1.75.41.1|Name=jgi.p|Trimin1|170749|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=148bp
MASEDRRIRALKDAQKREENKRCADCTERLPNYIVLDFKTFVCTACSGIH
REFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDG
SSVEKRREFIRMKYQEKRWYATTEDLAREAEEQARRASARARNEEAR*
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mRNA from alignment at Contig_75:650298..651009+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7681 ID=mRNA_7681|Name=jgi.p|Trimin1|170749|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=712bp|location=Sequence derived from alignment at Contig_75:650298..651009+ (Tribonema minus UTEX_B_3156 )
ATGGCTTCGGAAGACAGGAGAATAAGGGCGTTGAAAGACGCCCAGAAGCG GGAGGAGAACAAGCGGTGTGCGGATTGCACGGAACGCCTGCCCAACTACA TCGTCCTGGATTTCAAGACTTTCGTCTGCACAGCTTGCTCTGGCATCCAT CGAGAGTTCTCGCACAGGATCAAGTCCGTTTCGCTGGCGAACTTCACGGA CGACGAAGTCAGGGCCATCCGCAAGGGAGGCAACCGCGCTTCCAACGACC TGTGGCTGGCCAAGTGAGAGCGCATCTCATCGTGTCAGTTACTGCATTTT TTCCATGCTGGGGTGCACGTAGGCTTGTGCTGTGTGTTCATGAGCATGCA AACAAGCGTCTTTCACGCTCACACGCACCTTCTGCTTCATTTGCAAATGA GTGGGACTTCGACGCATAGACAGAGGCGATCATGCAATCACGTTCTTTGG GGTCCTCGCGATGTCGTCGCATCAAGTCAGCAGCACTTTAAAATGAAATT GACCAAGAGCCCCCTCCTCTGTTCTGGCCAGGTATGACCCCGACAGGGAC CTGCCGGAGCCGGATGGCAGCAGCGTGGAGAAACGGCGTGAGTTCATTCG CATGAAGTACCAGGAGAAGCGGTGGTACGCCACCACGGAGGATCTGGCTA GGGAGGCAGAGGAGCAGGCACGCAGGGCTAGCGCACGTGCCAGGAATGAG GAGGCCAGGTGA
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Coding sequence (CDS) from alignment at Contig_75:650298..651009+

>mRNA_7681 ID=mRNA_7681|Name=jgi.p|Trimin1|170749|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=444bp|location=Sequence derived from alignment at Contig_75:650298..651009+ (Tribonema minus UTEX_B_3156 )
ATGGCTTCGGAAGACAGGAGAATAAGGGCGTTGAAAGACGCCCAGAAGCG
GGAGGAGAACAAGCGGTGTGCGGATTGCACGGAACGCCTGCCCAACTACA
TCGTCCTGGATTTCAAGACTTTCGTCTGCACAGCTTGCTCTGGCATCCAT
CGAGAGTTCTCGCACAGGATCAAGTCCGTTTCGCTGGCGAACTTCACGGA
CGACGAAGTCAGGGCCATCCGCAAGGGAGGCAACCGCGCTTCCAACGACC
TGTGGCTGGCCAAGTATGACCCCGACAGGGACCTGCCGGAGCCGGATGGC
AGCAGCGTGGAGAAACGGCGTGAGTTCATTCGCATGAAGTACCAGGAGAA
GCGGTGGTACGCCACCACGGAGGATCTGGCTAGGGAGGCAGAGGAGCAGG
CACGCAGGGCTAGCGCACGTGCCAGGAATGAGGAGGCCAGGTGA
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