mRNA_7613 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151346
Unique NamemRNA_7613
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: A0A835YK20_9STRA (DnaJ domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK20_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.280e-29
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASLFQAIQAANVRIS 153
            DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASLFQAIQAANVRIS
Sbjct:    1 DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASLFQAIQAANVRIS 51          
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: D7G3I7_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.360e-12
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASLFQAIQAAN 141
            DPYL+LGV   A +  IKKAYRKLAL+YHPDKN+ T++LFQA+Q A+
Sbjct:   65 DPYLTLGVDPAADEGTIKKAYRKLALRYHPDKNKATSTLFQAVQGAH 111          
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: A0A482SP57_9ARCH (J domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP57_9ARCH)

HSP 1 Score: 60.5 bits (145), Expect = 4.030e-11
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    4 PYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASLFQAIQAANVR 147
            P+  LGV  +A   D++KAY+KLALKYHPDKN  T  LFQ IQ+AN R
Sbjct:    6 PFDVLGVNTEARTVDVRKAYKKLALKYHPDKNPKTTPLFQVIQSANSR 53          
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: A0A7S1G6Z7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6Z7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.550e-10
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASLFQAIQAANVRIS 153
            DPY  LGV   A  N +KKAYR+LAL+YHPDKN  T SLF+ + AA   +S
Sbjct:   75 DPYACLGVDSAATPNVVKKAYRRLALRYHPDKNHHTESLFKTVSAAYALVS 125          
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: A0A1G0WXQ3_9GAMM (Chaperone protein DnaJ n=1 Tax=Legionellales bacterium RIFCSPHIGHO2_12_FULL_37_14 TaxID=1798568 RepID=A0A1G0WXQ3_9GAMM)

HSP 1 Score: 60.8 bits (146), Expect = 1.620e-9
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASL---FQAIQAA 138
            D Y  LGVP DA D DIKKAYRKLA+KYHPD+N+G A+    F+ IQ+A
Sbjct:    6 DYYTLLGVPRDASDADIKKAYRKLAMKYHPDRNQGDAAASEKFKEIQSA 54          
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: A0A7S4A573_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A573_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.270e-9
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    4 PYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASLFQAIQAA 138
            PY +LG+  DA D  IKKAYRKLALK HPDKN  T  LFQA++ A
Sbjct:   61 PYGALGLTTDATDAQIKKAYRKLALKLHPDKNPKTTPLFQAVKTA 105          
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: A0A183CJ76_GLOPA (J domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183CJ76_GLOPA)

HSP 1 Score: 56.6 bits (135), Expect = 2.690e-9
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    7 YLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRG---TASLFQAIQAANVR 147
            Y  L VP DA D+DIK+AYR+LAL+YHPDKNR     +  FQ I  AN +
Sbjct:   29 YELLNVPKDATDDDIKRAYRRLALRYHPDKNRNDPEASKKFQEINYANAK 78          
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: UPI0001FE2A65 (hypothetical protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE2A65)

HSP 1 Score: 60.1 bits (144), Expect = 3.100e-9
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASLFQAIQAAN 141
            D Y +LGVP DA   DIKKA+RKLA+KYHPDKN     LFQ I  AN
Sbjct:  222 DYYEALGVPRDASAADIKKAFRKLAIKYHPDKNPEAKDLFQLINEAN 268          
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: A0A524AS23_9CHLR (Molecular chaperone DnaJ (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A524AS23_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 5.970e-9
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRG 105
            D Y SLGVP +A D DIKKAYRKLA++YHPD+N G
Sbjct:    4 DYYGSLGVPRNASDGDIKKAYRKLAMQYHPDRNPG 38          
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Match: A0A3D2X1B4_9BACT (Molecular chaperone DnaJ (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A3D2X1B4_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 6.360e-9
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRG 105
            D Y  LGVP +A DND+KKAYRK+A+KYHPDKN G
Sbjct:    6 DYYEILGVPRNATDNDLKKAYRKIAMKYHPDKNPG 40          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151346 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YK20_9STRA5.280e-29100.00DnaJ domain-containing protein (Fragment) n=1 Tax=... [more]
D7G3I7_ECTSI2.360e-1265.96Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A482SP57_9ARCH4.030e-1160.42J domain-containing protein n=1 Tax=archaeon TaxID... [more]
A0A7S1G6Z7_9STRA1.550e-1056.86Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1G0WXQ3_9GAMM1.620e-963.27Chaperone protein DnaJ n=1 Tax=Legionellales bacte... [more]
A0A7S4A573_9STRA2.270e-964.44Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A183CJ76_GLOPA2.690e-956.00J domain-containing protein n=1 Tax=Globodera pall... [more]
UPI0001FE2A653.100e-963.83hypothetical protein n=1 Tax=Capsaspora owczarzaki... [more]
A0A524AS23_9CHLR5.970e-971.43Molecular chaperone DnaJ (Fragment) n=1 Tax=Dehalo... [more]
A0A3D2X1B4_9BACT6.360e-971.43Molecular chaperone DnaJ (Fragment) n=1 Tax=Candid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:198327..198479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151346|gw1.75.155.1
BRITEko00000,ko00001,ko03012,ko03110
KEGG Pathwayko04141,ko05164,map04141,map05164
KEGG koko:K09512,ko:K09523,ko:K09527,ko:K17867
Descriptionspectrin binding
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,COG2214@1|root,KOG0691@2759|Eukaryota,KOG4177@2759|Eukaryota
Evalue5.08e-10
Seed ortholog192875.XP_004363605.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId151668
TrackFilteredModels1
ProteinId151346
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151346gene_7613Tribonema minus UTEX_B_3156 geneContig_75 198327..198479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7613_1exon_7613_1Tribonema minus UTEX_B_3156 exonContig_75 198327..198479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7613CDS_7613Tribonema minus UTEX_B_3156 CDSContig_75 198327..198479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151346Trimin1|151346|gw1.75.155.1Tribonema minus UTEX_B_3156 polypeptideContig_75 198327..198479 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7613 ID=mRNA_7613|Name=jgi.p|Trimin1|151346|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=153bp|location=Sequence derived from alignment at Contig_75:198327..198479- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACCCGTACTTATCTCTGGGAGTGCCAGTTGATGCTCCAGACAACGACAT
CAAGAAGGCCTACAGGAAGCTTGCTCTCAAATACCATCCTGACAAGAACC
GAGGCACCGCAAGCCTGTTTCAGGCCATACAAGCAGCAAATGTGAGGATC
TCA
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protein sequence of jgi.p|Trimin1|151346

>Trimin1|151346|gw1.75.155.1 ID=Trimin1|151346|gw1.75.155.1|Name=jgi.p|Trimin1|151346|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=51bp
DPYLSLGVPVDAPDNDIKKAYRKLALKYHPDKNRGTASLFQAIQAANVRI
S
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mRNA from alignment at Contig_75:198327..198479-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7613 ID=mRNA_7613|Name=jgi.p|Trimin1|151346|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=153bp|location=Sequence derived from alignment at Contig_75:198327..198479- (Tribonema minus UTEX_B_3156 )
GACCCGTACTTATCTCTGGGAGTGCCAGTTGATGCTCCAGACAACGACAT CAAGAAGGCCTACAGGAAGCTTGCTCTCAAATACCATCCTGACAAGAACC GAGGCACCGCAAGCCTGTTTCAGGCCATACAAGCAGCAAATGTGAGGATC TCA
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Coding sequence (CDS) from alignment at Contig_75:198327..198479-

>mRNA_7613 ID=mRNA_7613|Name=jgi.p|Trimin1|151346|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=153bp|location=Sequence derived from alignment at Contig_75:198327..198479- (Tribonema minus UTEX_B_3156 )
GACCCGTACTTATCTCTGGGAGTGCCAGTTGATGCTCCAGACAACGACAT
CAAGAAGGCCTACAGGAAGCTTGCTCTCAAATACCATCCTGACAAGAACC
GAGGCACCGCAAGCCTGTTTCAGGCCATACAAGCAGCAAATGTGAGGATC
TCA
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