mRNA_7571 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152574
Unique NamemRNA_7571
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A835Z1T6_9STRA (PHD-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1T6_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.710e-53
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query:    1 QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRGAD 213
            QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRGAD
Sbjct:    1 QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRGAD 71          
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A7S2CHR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHR1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.620e-20
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   10 CPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMR 204
            C FCQ+D  + +C  C C  C GKHD   +LLCD CD E H+ C++PPL  +PEG+W+CS+C ++
Sbjct:   72 CAFCQDDPKIKVCFKCGCQKCGGKHDHSLILLCDECDDEYHVYCVDPPLERIPEGDWFCSKCELK 136          
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A7S1CP91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CP91_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.890e-20
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    7 WCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
            WC  C +D  V  C  C C  C GKH  +S+LLCDGCDGE HM CL+PPL  VP+ +WYC  C
Sbjct:   32 WCAVCHDDPDVA-CTACGCRICRGKHSLESILLCDGCDGEFHMECLDPPLDKVPKTDWYCRAC 93          
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A6J8EQQ5_MYTCO (RING-type E3 ubiquitin transferase n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8EQQ5_MYTCO)

HSP 1 Score: 75.5 bits (184), Expect = 2.750e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    1 QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEG-EWYCSRC 195
            +P C  C  D+ +  C HC+C  C GK DPD  +LCD CD   H+ACL PPL S+PE  EWYC  C
Sbjct:  323 KPDCDHCL-DNPLKKCKHCACCECGGKQDPDKQILCDECDQAYHLACLKPPLTSIPEDDEWYCPDC 387          
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A6P7H1X8_DIAVI (RING-type E3 ubiquitin transferase n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7H1X8_DIAVI)

HSP 1 Score: 73.6 bits (179), Expect = 1.310e-13
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   10 CPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
            C  C++D +   C  C CT CH K +   ++LCD CD E H+ CL+PPL  VPEG+WYC  C
Sbjct:  274 CKTCKDDKNKK-CRDCGCTVCHTKENWGDIILCDECDDEYHLECLDPPLDQVPEGDWYCPEC 334          
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A7L3MVI1_9AVES (RING-type E3 ubiquitin transferase (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A7L3MVI1_9AVES)

HSP 1 Score: 72.0 bits (175), Expect = 4.550e-13
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    4 PWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
            P C  C+ D+    C  C+C  C GK DPD  L+CD CD   H+ CLNPPL S+P+ +WYC  C
Sbjct:  270 PVCKACK-DNPKKTCRICACHICGGKQDPDKQLMCDECDMAFHIYCLNPPLSSIPDEDWYCPEC 332          
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A5N5SJ37_9CRUS (Bromodomain adjacent to zinc finger domain protein 1A n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5SJ37_9CRUS)

HSP 1 Score: 72.0 bits (175), Expect = 4.610e-13
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1
Query:   61 CTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
            C  C  ++DP+S+LLCDGCDG  HM+CL P L S+PEG+WYC +C
Sbjct: 1226 CRVCKRQNDPNSMLLCDGCDGGYHMSCLRPKLKSIPEGDWYCDKC 1270          
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A835SC30_9CHLO (PHD-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SC30_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 8.670e-13
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   61 CTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRGA 210
            C  C G  DPD++LLCD CDG  HM CL+PPL  +P+G+W+C  CT   A
Sbjct: 1623 CAVCGGGDDPDTILLCDTCDGGYHMGCLDPPLKDIPDGDWHCPNCTAADA 1672          
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A6J1WNM4_GALME (RING-type E3 ubiquitin transferase n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1WNM4_GALME)

HSP 1 Score: 70.5 bits (171), Expect = 1.590e-12
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   28 DSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
            D+   +C  C C  C GK  PD ++LCD C+   HM CL PPLL +PE +WYC  C
Sbjct:  346 DNEYSLCKDCGCCVCSGKDFPDKIVLCDECNNGYHMICLTPPLLELPEEDWYCPSC 401          
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A8J4B691_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B691_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 3.020e-12
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   61 CTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRG 207
            C  C    D + +LLCDGCDGE H  C+ PPLL VPEG W+C  CT RG
Sbjct: 1186 CRVCWLDEDKNRILLCDGCDGEYHCYCVEPPLLEVPEGSWFCPSCTARG 1234          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1T6_9STRA2.710e-53100.00PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A7S2CHR1_9STRA2.620e-2049.23Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S1CP91_9STRA4.890e-2055.56Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6J8EQQ5_MYTCO2.750e-1451.52RING-type E3 ubiquitin transferase n=2 Tax=Mytilus... [more]
A0A6P7H1X8_DIAVI1.310e-1348.39RING-type E3 ubiquitin transferase n=1 Tax=Diabrot... [more]
A0A7L3MVI1_9AVES4.550e-1348.44RING-type E3 ubiquitin transferase (Fragment) n=5 ... [more]
A0A5N5SJ37_9CRUS4.610e-1360.00Bromodomain adjacent to zinc finger domain protein... [more]
A0A835SC30_9CHLO8.670e-1354.00PHD-type domain-containing protein n=1 Tax=Chlamyd... [more]
A0A6J1WNM4_GALME1.590e-1248.21RING-type E3 ubiquitin transferase n=1 Tax=Galleri... [more]
A0A8J4B691_9CHLO3.020e-1257.14Uncharacterized protein n=1 Tax=Volvox africanus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:1200360..1200572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152574|gw1.24.103.1
Descriptionmethylated histone binding
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1473@1|root,KOG1473@2759|Eukaryota
Evalue1.14e-19
Seed ortholog2880.D7FP41
Hectar predicted targeting categoryother localisation
TranscriptId152896
TrackFilteredModels1
ProteinId152574
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152574gene_7571Tribonema minus UTEX_B_3156 geneContig_24 1200360..1200572 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7571_1exon_7571_1Tribonema minus UTEX_B_3156 exonContig_24 1200360..1200572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7571CDS_7571Tribonema minus UTEX_B_3156 CDSContig_24 1200360..1200572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152574Trimin1|152574|gw1.24.103.1Tribonema minus UTEX_B_3156 polypeptideContig_24 1200360..1200572 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7571 ID=mRNA_7571|Name=jgi.p|Trimin1|152574|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_24:1200360..1200572+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCCATGGTGCCCGTTCTGCCAGGAAGACTCGTCCGTGGTCATGTGCCT
GCACTGCAGCTGCACAGCATGCCACGGCAAGCACGATCCCGACAGCGTGC
TGCTGTGCGACGGCTGCGACGGCGAGTGCCACATGGCATGCCTCAATCCG
CCCCTGCTCTCGGTCCCGGAGGGCGAGTGGTACTGCAGCCGGTGTACAAT
GAGGGGCGCGGAT
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protein sequence of jgi.p|Trimin1|152574

>Trimin1|152574|gw1.24.103.1 ID=Trimin1|152574|gw1.24.103.1|Name=jgi.p|Trimin1|152574|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNP
PLLSVPEGEWYCSRCTMRGAD
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mRNA from alignment at Contig_24:1200360..1200572+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7571 ID=mRNA_7571|Name=jgi.p|Trimin1|152574|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_24:1200360..1200572+ (Tribonema minus UTEX_B_3156 )
CAGCCATGGTGCCCGTTCTGCCAGGAAGACTCGTCCGTGGTCATGTGCCT GCACTGCAGCTGCACAGCATGCCACGGCAAGCACGATCCCGACAGCGTGC TGCTGTGCGACGGCTGCGACGGCGAGTGCCACATGGCATGCCTCAATCCG CCCCTGCTCTCGGTCCCGGAGGGCGAGTGGTACTGCAGCCGGTGTACAAT GAGGGGCGCGGAT
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Coding sequence (CDS) from alignment at Contig_24:1200360..1200572+

>mRNA_7571 ID=mRNA_7571|Name=jgi.p|Trimin1|152574|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_24:1200360..1200572+ (Tribonema minus UTEX_B_3156 )
CAGCCATGGTGCCCGTTCTGCCAGGAAGACTCGTCCGTGGTCATGTGCCT
GCACTGCAGCTGCACAGCATGCCACGGCAAGCACGATCCCGACAGCGTGC
TGCTGTGCGACGGCTGCGACGGCGAGTGCCACATGGCATGCCTCAATCCG
CCCCTGCTCTCGGTCCCGGAGGGCGAGTGGTACTGCAGCCGGTGTACAAT
GAGGGGCGCGGAT
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