mRNA_7571 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A835Z1T6_9STRA (PHD-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1T6_9STRA) HSP 1 Score: 168 bits (425), Expect = 2.710e-53 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 1 QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRGAD 213
QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRGAD
Sbjct: 1 QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRGAD 71
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A7S2CHR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHR1_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.620e-20 Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 10 CPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMR 204
C FCQ+D + +C C C C GKHD +LLCD CD E H+ C++PPL +PEG+W+CS+C ++
Sbjct: 72 CAFCQDDPKIKVCFKCGCQKCGGKHDHSLILLCDECDDEYHVYCVDPPLERIPEGDWFCSKCELK 136
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A7S1CP91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CP91_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 4.890e-20 Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 7 WCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
WC C +D V C C C C GKH +S+LLCDGCDGE HM CL+PPL VP+ +WYC C
Sbjct: 32 WCAVCHDDPDVA-CTACGCRICRGKHSLESILLCDGCDGEFHMECLDPPLDKVPKTDWYCRAC 93
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A6J8EQQ5_MYTCO (RING-type E3 ubiquitin transferase n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8EQQ5_MYTCO) HSP 1 Score: 75.5 bits (184), Expect = 2.750e-14 Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 1 QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEG-EWYCSRC 195
+P C C D+ + C HC+C C GK DPD +LCD CD H+ACL PPL S+PE EWYC C
Sbjct: 323 KPDCDHCL-DNPLKKCKHCACCECGGKQDPDKQILCDECDQAYHLACLKPPLTSIPEDDEWYCPDC 387
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A6P7H1X8_DIAVI (RING-type E3 ubiquitin transferase n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7H1X8_DIAVI) HSP 1 Score: 73.6 bits (179), Expect = 1.310e-13 Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 10 CPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
C C++D + C C CT CH K + ++LCD CD E H+ CL+PPL VPEG+WYC C
Sbjct: 274 CKTCKDDKNKK-CRDCGCTVCHTKENWGDIILCDECDDEYHLECLDPPLDQVPEGDWYCPEC 334
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A7L3MVI1_9AVES (RING-type E3 ubiquitin transferase (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A7L3MVI1_9AVES) HSP 1 Score: 72.0 bits (175), Expect = 4.550e-13 Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 4 PWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
P C C+ D+ C C+C C GK DPD L+CD CD H+ CLNPPL S+P+ +WYC C
Sbjct: 270 PVCKACK-DNPKKTCRICACHICGGKQDPDKQLMCDECDMAFHIYCLNPPLSSIPDEDWYCPEC 332
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A5N5SJ37_9CRUS (Bromodomain adjacent to zinc finger domain protein 1A n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5SJ37_9CRUS) HSP 1 Score: 72.0 bits (175), Expect = 4.610e-13 Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1
Query: 61 CTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
C C ++DP+S+LLCDGCDG HM+CL P L S+PEG+WYC +C
Sbjct: 1226 CRVCKRQNDPNSMLLCDGCDGGYHMSCLRPKLKSIPEGDWYCDKC 1270
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A835SC30_9CHLO (PHD-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SC30_9CHLO) HSP 1 Score: 71.2 bits (173), Expect = 8.670e-13 Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query: 61 CTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRGA 210
C C G DPD++LLCD CDG HM CL+PPL +P+G+W+C CT A
Sbjct: 1623 CAVCGGGDDPDTILLCDTCDGGYHMGCLDPPLKDIPDGDWHCPNCTAADA 1672
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A6J1WNM4_GALME (RING-type E3 ubiquitin transferase n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1WNM4_GALME) HSP 1 Score: 70.5 bits (171), Expect = 1.590e-12 Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1
Query: 28 DSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRC 195
D+ +C C C C GK PD ++LCD C+ HM CL PPLL +PE +WYC C
Sbjct: 346 DNEYSLCKDCGCCVCSGKDFPDKIVLCDECNNGYHMICLTPPLLELPEEDWYCPSC 401
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Match: A0A8J4B691_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B691_9CHLO) HSP 1 Score: 69.7 bits (169), Expect = 3.020e-12 Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 1
Query: 61 CTACHGKHDPDSVLLCDGCDGECHMACLNPPLLSVPEGEWYCSRCTMRG 207
C C D + +LLCDGCDGE H C+ PPLL VPEG W+C CT RG
Sbjct: 1186 CRVCWLDEDKNRILLCDGCDGEYHCYCVEPPLLEVPEGSWFCPSCTARG 1234 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152574 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7571 ID=mRNA_7571|Name=jgi.p|Trimin1|152574|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_24:1200360..1200572+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGCCATGGTGCCCGTTCTGCCAGGAAGACTCGTCCGTGGTCATGTGCCTback to top protein sequence of jgi.p|Trimin1|152574 >Trimin1|152574|gw1.24.103.1 ID=Trimin1|152574|gw1.24.103.1|Name=jgi.p|Trimin1|152574|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp QPWCPFCQEDSSVVMCLHCSCTACHGKHDPDSVLLCDGCDGECHMACLNPback to top mRNA from alignment at Contig_24:1200360..1200572+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7571 ID=mRNA_7571|Name=jgi.p|Trimin1|152574|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_24:1200360..1200572+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_24:1200360..1200572+ >mRNA_7571 ID=mRNA_7571|Name=jgi.p|Trimin1|152574|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_24:1200360..1200572+ (Tribonema minus UTEX_B_3156 )back to top |