mRNA_7523 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348438
Unique NamemRNA_7523
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348438 vs. uniprot
Match: A0A836CG57_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG57_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.550e-23
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 MVVVASGDTTAAVTVAVIMXXXXXXXXXXXXXXXXXXXXXXXAMAADELHGHHQEIAQKAIQRLYKAELLKSDTRF 228
            MVVVASGDTTAAVTVAVIMXXXXXXXXXXXXXXXXXXXXXXXAMAADELHGHHQEIAQKAIQRLYKAELLKSDTRF
Sbjct:    1 MVVVASGDTTAAVTVAVIMXXXXXXXXXXXXXXXXXXXXXXXAMAADELHGHHQEIAQKAIQRLYKAELLKSDTRF 76
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BLAST of jgi.p|Trimin1|348438 vs. uniprot
Match: A0A835Z5H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H3_9STRA)

HSP 1 Score: 889 bits (2298), Expect = 0.000e+0
Identity = 700/700 (100.00%), Postives = 700/700 (100.00%), Query Frame = 1 
Query:   16 MRPRVLVLLALLLHACSPAAPQESRENTALQDHDSDATTTVGDAGVYGSDAIDIQHDKQSEDTASGPQDSVHDEEEPNTPVGKAGTADAELEEDAELTVWQDAYEDEEAAVDAAHLEPQEETQHDDSFADGERPAGDDAAAELQSADDASAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGQADSELVSHDAGGGATXXXXXXXXADVHGDAGAKGXXXXXXXXXXDRASAQEPQASQARTDAHTAADEPXXXXXXXXXXXXXXXXXXXXXXEIEARQQGVGGMAGAEGDAGGSCGEQEGVLRRAVAALEHALSEREEQVRGLQEGHRASLQALKDAMAQQQAAMEAERQNFVGSCQESLAHAQGDIAAQLRDAKAQXXXXXXXXXXXXXXCELAVAEARHEARLAALEEAGSAEDVDPFDPRAQGQRDGAQPVQPAAAAVAAAAGGERHTGLTFTARTLVDDACRVTAHVWVAALDAGEAVALRVWHHRGELGALGGALERGVGSLQGTWEGVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDALGAAPLLRPYAPAAVKYAALALAALLVVHALLPLALLAVRVTVAALLLPFRCTWFILTCRCLRGGASAVHHNDKHKRKTQ 2115
            MRPRVLVLLALLLHACSPAAPQESRENTALQDHDSDATTTVGDAGVYGSDAIDIQHDKQSEDTASGPQDSVHDEEEPNTPVGKAGTADAELEEDAELTVWQDAYEDEEAAVDAAHLEPQEETQHDDSFADGERPAGDDAAAELQSADDASAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGQADSELVSHDAGGGATXXXXXXXXADVHGDAGAKGXXXXXXXXXXDRASAQEPQASQARTDAHTAADEPXXXXXXXXXXXXXXXXXXXXXXEIEARQQGVGGMAGAEGDAGGSCGEQEGVLRRAVAALEHALSEREEQVRGLQEGHRASLQALKDAMAQQQAAMEAERQNFVGSCQESLAHAQGDIAAQLRDAKAQXXXXXXXXXXXXXXCELAVAEARHEARLAALEEAGSAEDVDPFDPRAQGQRDGAQPVQPAAAAVAAAAGGERHTGLTFTARTLVDDACRVTAHVWVAALDAGEAVALRVWHHRGELGALGGALERGVGSLQGTWEGVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDALGAAPLLRPYAPAAVKYAALALAALLVVHALLPLALLAVRVTVAALLLPFRCTWFILTCRCLRGGASAVHHNDKHKRKTQ
Sbjct:    1 MRPRVLVLLALLLHACSPAAPQESRENTALQDHDSDATTTVGDAGVYGSDAIDIQHDKQSEDTASGPQDSVHDEEEPNTPVGKAGTADAELEEDAELTVWQDAYEDEEAAVDAAHLEPQEETQHDDSFADGERPAGDDAAAELQSADDASAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGQADSELVSHDAGGGATXXXXXXXXADVHGDAGAKGXXXXXXXXXXDRASAQEPQASQARTDAHTAADEPXXXXXXXXXXXXXXXXXXXXXXEIEARQQGVGGMAGAEGDAGGSCGEQEGVLRRAVAALEHALSEREEQVRGLQEGHRASLQALKDAMAQQQAAMEAERQNFVGSCQESLAHAQGDIAAQLRDAKAQXXXXXXXXXXXXXXCELAVAEARHEARLAALEEAGSAEDVDPFDPRAQGQRDGAQPVQPAAAAVAAAAGGERHTGLTFTARTLVDDACRVTAHVWVAALDAGEAVALRVWHHRGELGALGGALERGVGSLQGTWEGVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDALGAAPLLRPYAPAAVKYAALALAALLVVHALLPLALLAVRVTVAALLLPFRCTWFILTCRCLRGGASAVHHNDKHKRKTQ 700
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348438 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CG57_9STRA6.550e-23100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|348438 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z5H3_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:635150..636458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348438|estExt_Genemark1.C_Ctg_240057
Hectar predicted targeting categorysignal anchor
TranscriptId348760
TrackFilteredModels1
ProteinId348438
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348438gene_7523Tribonema minus UTEX_B_3156 geneContig_24 635150..636458 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7523_1exon_7523_1Tribonema minus UTEX_B_3156 exonContig_24 635150..635335 +
exon_7523_2exon_7523_2Tribonema minus UTEX_B_3156 exonContig_24 636414..636458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7523CDS_7523Tribonema minus UTEX_B_3156 CDSContig_24 635150..635335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348438Trimin1|348438|estExt_Genemark1.C_Ctg_240057Tribonema minus UTEX_B_3156 polypeptideContig_24 635150..636458 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7523 ID=mRNA_7523|Name=jgi.p|Trimin1|348438|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_24:635150..636458+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTGGTGGCTTCGGGGGATACGACGGCGGCGGTCACGGTGGCGGT
CATCATGGCTGCGATGGCGGCGGCGGTCACGGTGGTGATGGTGGCTGTGG
TGGCGGCGGCGACGGCGGCGGTGGTGGCGATGGCGGCTGATGAGCTCCAC
GGCCATCATCAAGAGATCGCGCAGAAGGCGATACAACGGCTGTACAAAGC
GGAGCTCTTGAAGTCGGACACGCGCTTCTGA
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protein sequence of jgi.p|Trimin1|348438

>Trimin1|348438|estExt_Genemark1.C_Ctg_240057 ID=Trimin1|348438|estExt_Genemark1.C_Ctg_240057|Name=jgi.p|Trimin1|348438|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp
MVVVASGDTTAAVTVAVIMAAMAAAVTVVMVAVVAAATAAVVAMAADELH
GHHQEIAQKAIQRLYKAELLKSDTRF*
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mRNA from alignment at Contig_24:635150..636458+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7523 ID=mRNA_7523|Name=jgi.p|Trimin1|348438|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1309bp|location=Sequence derived from alignment at Contig_24:635150..636458+ (Tribonema minus UTEX_B_3156 )
ATGGTGGTGGTGGCTTCGGGGGATACGACGGCGGCGGTCACGGTGGCGGT
CATCATGGCTGCGATGGCGGCGGCGGTCACGGTGGTGATGGTGGCTGTGG
TGGCGGCGGCGACGGCGGCGGTGGTGGCGATGGCGGCTGATGAGCTCCAC
GGCCATCATCAAGAGATCGCGCAGAAGGCGATACAAGTATATAATGCAGC
AGACGCGACGCGCAGCTGCTGCAGTGCACAACAGTAACTGTTGAACAGTT
GCACAACATGCGTCACTCATGTTTATAAGCCAGGCACCAGCGCTTCGCCT
TGTAATGCCAGCTTTATCTTGGATGCCTTTGCAAGAATGAGGTCTATTAG
TAAGGCATCATCAATGATGCGCTTCGGGGGTTAGTGTGTCACGTAACACG
TGTTTTACAAAATGAACAAGAAAGTTTACATTCGACACAGACTGAGTATG
TAGCATGCGGATATATCCTCGGATGATTATCCTGCATGTACTGCATGCGC
TCATTTCCATGGATAGTGTGTGTTTTGCACGATTGTTGCTCTGCATCGGC
TGCCATGGTGGAAATCATGCTTGAGCGAGGAGGTATGGAGACTCGGATCA
TCATGATCCATCATGCACTGCAAAAAGGTTTGCGCATTGCCAGCACCCAC
ACAATTTTTTGCTTTGTATAGTACTCGAAGTGACATGACATTGTGCAGCC
CTTTGTTCATCTTGTAGTACCTTCCTAAGTTAAGGTGAAGTTTGCTCTCA
CTGACAGGCTTCATCGTGACAAGCAATAATGTTAGTGTGTAGCCACACAC
TCAGGCTGTGGCAGTCGATGCTGGGACCATTCAAGTCAAGTTGACTGAAT
TCTCATGCAGCAAGTACAGGTACTAGCAGCCACGTGCATCATGCACTGCA
TGGCACCATGTGACTGCGTGCGCGGCGCTTGCCAGTGGGTCAGTGATTCG
TAGTACTACTCAGAGGCTCAGTAGGCTACTAGTGCATGCCATATGCATGC
GGCAGAACCGCCACAGTGACTCTCGCCATGCCTCTGCGTGATGAGTGACG
CTTGCTGCGTGGCCTGAACACAAATTTGGCCCGACCTCATTGGCTGGTTT
CTGATTCTGAACAATTTCTGATTCTGAATCATTTCGAACAATTTCTAAGT
TACCTATTTTCATATGTTCTTCACAGCCCTCTAAAGGGCTGCCACAGTGA
CCATGAACTAATATGGACATGCGATTGCCCTCATGTAATCTTTGCGCATG
ATCGCTCGCAAAAGCGGCTGTACAAAGCGGAGCTCTTGAAGTCGGACACG
CGCTTCTGA
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Coding sequence (CDS) from alignment at Contig_24:635150..636458+

>mRNA_7523 ID=mRNA_7523|Name=jgi.p|Trimin1|348438|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_24:635150..636458+ (Tribonema minus UTEX_B_3156 )
ATGGTGGTGGTGGCTTCGGGGGATACGACGGCGGCGGTCACGGTGGCGGT
CATCATGGCTGCGATGGCGGCGGCGGTCACGGTGGTGATGGTGGCTGTGG
TGGCGGCGGCGACGGCGGCGGTGGTGGCGATGGCGGCTGATGAGCTCCAC
GGCCATCATCAAGAGATCGCGCAGAAGGCGATACAACGGCTGTACAAAGC
GGAGCTCTTGAAGTCGGACACGCGCTTCTGA
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