mRNA_751 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153900
Unique NamemRNA_751
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A835Z406_9STRA (Phytochrome (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z406_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.110e-79
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG 342
            MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG
Sbjct:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG 114          
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A835Z0I1_9STRA (Phytochrome (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 3.220e-56
Identity = 81/114 (71.05%), Postives = 98/114 (85.96%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG 342
            MLYTFD++WNG+V++EFK  +D VSYMGLHFPASDIPKVARDLYF NKVR+IFD   PE  I+G KL++K+CMLRGVAPMH EYM NMGI+GS+S+A+  + L+GLLVFHSY G
Sbjct:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG 114          
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A835Z4F3_9STRA (GAF domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.460e-30
Identity = 62/119 (52.10%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPI----TGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVE-KLDGLLVFHSYQG 342
            M Y FD +WNGQV+ E  +  D VSY+GLHFP +DIP+ ARD+Y   +VR IFD+   EV      T  KLD+ +C+ RGV+ +HV YM NMGI+GS+S+AI +   L GLLV HS  G
Sbjct:  136 MAYQFDSQWNGQVIFERIIGSDPVSYLGLHFPETDIPQAARDMYLEQRVRFIFDVDSAEVSFDTRGTPIKLDLSECVQRGVSDVHVRYMKNMGIRGSVSIAIIMRGALWGLLVLHSKNG 254          
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A835YZ29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ29_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.080e-28
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPI----TGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVE-KLDGLLVFHSYQG 342
            M Y FD +WNGQV+ E  +  D VSY GLHFP +DIP+ ARD+Y   +VR IFD+   EV      T  KLD+ +C+ RGV+ +HV YM NMGI+G +S+AI +   L GLLV HS  G
Sbjct:  136 MAYQFDSQWNGQVIFERIIGTDPVSYQGLHFPETDIPQAARDMYLEQRVRFIFDVDSAEVSFDTRGTPFKLDLSECVQRGVSDVHVRYMKNMGIRGFVSIAIIMRGALWGLLVLHSKNG 254          
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: UPI0004227404 (ATP-binding protein n=1 Tax=Gramella portivictoriae TaxID=326069 RepID=UPI0004227404)

HSP 1 Score: 112 bits (281), Expect = 1.170e-26
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPIT------GGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLA-IDVEKLDGLLVFH 330
            M+Y FDDEWNG+V+ E K KED  +++GL +PASDIPK AR L+F NKVRII D+    V IT      G  LD+ K  LRGV+P+H+EY+ NMG+  S++ A I   KL GLL  H
Sbjct:  165 MVYKFDDEWNGKVIAEAK-KEDLETFLGLQYPASDIPKQARQLFFKNKVRIISDVNYAPVKITPMLDPSGDPLDISKSKLRGVSPIHIEYLQNMGVGSSLTAALISNGKLWGLLACH 280          
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A1L7I0P8_9FLAO (Phytochrome, two-component sensor histidine kinase n=2 Tax=Gramella TaxID=292691 RepID=A0A1L7I0P8_9FLAO)

HSP 1 Score: 111 bits (277), Expect = 4.050e-26
Identity = 61/120 (50.83%), Postives = 80/120 (66.67%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEV-------PITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLA-IDVEKLDGLLVFHSY 336
            M+Y FD+EWNGQVV E + +E   S++GLH+PASDIPK AR+L+F N+VRII D+    V       PI G  LD+ K  LRGV+P+H+EY+ NM +  S++ A I   KL GLL  H Y
Sbjct:  165 MVYRFDEEWNGQVVAE-EREEHLESWLGLHYPASDIPKQARELFFKNRVRIISDVNYQPVEITPQFSPINGEPLDLSKSKLRGVSPIHIEYLQNMKVGASLTAALISNGKLWGLLACHHY 283          
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: UPI000F872503 (GAF domain-containing protein n=1 Tax=Staphylococcus aureus TaxID=1280 RepID=UPI000F872503)

HSP 1 Score: 103 bits (257), Expect = 5.050e-26
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVS-YMGLHFPASDIPKVARDLYFINKVRII-------FDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVE-KLDGLLVFHSY 336
            M+Y FDD WNG VV E   + DD+  ++GLH+PA+DIPK AR+LY  N +R I         +  P  P++G  LDM  C+LR V+P+H++Y+ NMG+  S+S+++  E KL GL+  H Y
Sbjct:   19 MVYRFDDMWNGSVVSE--QRRDDIEPFLGLHYPAADIPKQARELYTKNSLRFIAVRDYEPVAMVPPLDPLSGAPLDMSYCVLRSVSPIHIQYLRNMGVSASMSISLLREGKLWGLVACHHY 137          
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A542AVW0_9FLAO (Light-regulated signal transduction histidine kinase (Bacteriophytochrome) n=1 Tax=Gramella sp. Hel_I_59 TaxID=1249978 RepID=A0A542AVW0_9FLAO)

HSP 1 Score: 109 bits (272), Expect = 1.920e-25
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEV-------PITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLA-IDVEKLDGLLVFH 330
            M+Y FDDEWNG+V+ E K  ED  +++GL +PASDIPK AR L+F N+VRII D+    V       P+ G  LD+ K  LRGV+P+H+EY+ NMGI  S++ A I   KL GLL  H
Sbjct:  165 MVYKFDDEWNGKVIAEAK-NEDLEAFLGLQYPASDIPKQARQLFFKNRVRIISDVNYAPVKIVPQISPVGGEPLDISKSKLRGVSPIHIEYLQNMGIGASLTAALISNGKLWGLLACH 281          
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A1H1QTA9_9FLAO (Bacteriophytochrome (Light-regulated signal transduction histidine kinase) n=2 Tax=Gramella echinicola TaxID=279359 RepID=A0A1H1QTA9_9FLAO)

HSP 1 Score: 108 bits (271), Expect = 2.620e-25
Identity = 59/120 (49.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEV-------PITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLA-IDVEKLDGLLVFHSY 336
            M+Y FD+EWNG+V+ E K KE D S++GLH+PASDIPK AR+L+  NKVRII D+    V       P+ G  LD+    LR V+P+H+EY+ NM +  S++ A I   KL GLL  H Y
Sbjct:  164 MIYKFDEEWNGKVIAEEKNKEMD-SWLGLHYPASDIPKQARELFLKNKVRIISDVNYSPVKIVPNFSPLNGQPLDLSNSKLRAVSPIHIEYLQNMKVGASLTAALISNGKLWGLLACHHY 282          
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A6L6XSH3_9ACTN (SpoIIE family protein phosphatase n=3 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A6L6XSH3_9ACTN)

HSP 1 Score: 108 bits (269), Expect = 4.940e-25
Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPI-------TGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVE-KLDGLLVFHSYQG 342
            M+Y FDDEWNG+V+ E + + D  S++GLH+PASDIP  AR LY +N  R+I DI    VP+       TG  LD+    LR V+P+H+EY++NMG+  S+S+++ V+ +L GL+  H Y G
Sbjct:  229 MVYRFDDEWNGEVIAE-ERRSDLNSFLGLHYPASDIPAQARRLYTVNWSRLIADIGYQPVPLHPIFDPSTGAPLDLSHATLRSVSPIHIEYLSNMGVGASMSISLIVDGELWGLVACHHYSG 349          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z406_9STRA2.110e-79100.00Phytochrome (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835Z0I1_9STRA3.220e-5671.05Phytochrome (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835Z4F3_9STRA2.460e-3052.10GAF domain-like protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ29_9STRA1.080e-2851.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00042274041.170e-2652.99ATP-binding protein n=1 Tax=Gramella portivictoria... [more]
A0A1L7I0P8_9FLAO4.050e-2650.83Phytochrome, two-component sensor histidine kinase... [more]
UPI000F8725035.050e-2644.63GAF domain-containing protein n=1 Tax=Staphylococc... [more]
A0A542AVW0_9FLAO1.920e-2550.85Light-regulated signal transduction histidine kina... [more]
A0A1H1QTA9_9FLAO2.620e-2549.17Bacteriophytochrome (Light-regulated signal transd... [more]
A0A6L6XSH3_9ACTN4.940e-2545.90SpoIIE family protein phosphatase n=3 Tax=unclassi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1335436..1335777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153900|gw1.2.326.1
DescriptionPhytochrome region
COG categoryT
Max annot lvl4751|Fungi
EggNOG OGsCOG0642@1|root,KOG0519@2759|Eukaryota,39R3Q@33154|Opisthokonta,3NUCH@4751|Fungi,3UZGV@5204|Basidiomycota,2266P@155619|Agaricomycetes,3H3YW@355688|Agaricomycetes incertae sedis
Evalue2.41e-26
Seed ortholog160860.XP_007337527.1
Hectar predicted targeting categoryother localisation
TranscriptId154222
TrackFilteredModels1
ProteinId153900
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153900gene_751Tribonema minus UTEX_B_3156 geneContig_2 1335436..1335777 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_751_1exon_751_1Tribonema minus UTEX_B_3156 exonContig_2 1335436..1335777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_751CDS_751Tribonema minus UTEX_B_3156 CDSContig_2 1335436..1335777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153900Trimin1|153900|gw1.2.326.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1335436..1335777 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_751 ID=mRNA_751|Name=jgi.p|Trimin1|153900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_2:1335436..1335777+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTACACATTTGATGACGAATGGAACGGACAAGTGGTGCATGAGTT
CAAAATGAAAGAAGACGATGTATCATACATGGGTCTGCATTTCCCGGCGT
CAGACATACCCAAAGTGGCCAGAGACCTTTACTTCATCAACAAGGTTCGT
ATTATCTTTGATATTACCAAACCTGAAGTTCCCATCACTGGAGGCAAGCT
GGATATGAAAAAGTGCATGCTTCGAGGAGTCGCTCCGATGCATGTCGAGT
ACATGACTAACATGGGAATCAAGGGCTCTATATCTCTGGCAATCGACGTA
GAGAAGTTGGATGGTTTACTTGTATTTCACTCTTACCAAGGG
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protein sequence of jgi.p|Trimin1|153900

>Trimin1|153900|gw1.2.326.1 ID=Trimin1|153900|gw1.2.326.1|Name=jgi.p|Trimin1|153900|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp
MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVR
IIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDV
EKLDGLLVFHSYQG
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mRNA from alignment at Contig_2:1335436..1335777+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_751 ID=mRNA_751|Name=jgi.p|Trimin1|153900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_2:1335436..1335777+ (Tribonema minus UTEX_B_3156 )
ATGCTGTACACATTTGATGACGAATGGAACGGACAAGTGGTGCATGAGTT CAAAATGAAAGAAGACGATGTATCATACATGGGTCTGCATTTCCCGGCGT CAGACATACCCAAAGTGGCCAGAGACCTTTACTTCATCAACAAGGTTCGT ATTATCTTTGATATTACCAAACCTGAAGTTCCCATCACTGGAGGCAAGCT GGATATGAAAAAGTGCATGCTTCGAGGAGTCGCTCCGATGCATGTCGAGT ACATGACTAACATGGGAATCAAGGGCTCTATATCTCTGGCAATCGACGTA GAGAAGTTGGATGGTTTACTTGTATTTCACTCTTACCAAGGG
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Coding sequence (CDS) from alignment at Contig_2:1335436..1335777+

>mRNA_751 ID=mRNA_751|Name=jgi.p|Trimin1|153900|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_2:1335436..1335777+ (Tribonema minus UTEX_B_3156 )
ATGCTGTACACATTTGATGACGAATGGAACGGACAAGTGGTGCATGAGTT
CAAAATGAAAGAAGACGATGTATCATACATGGGTCTGCATTTCCCGGCGT
CAGACATACCCAAAGTGGCCAGAGACCTTTACTTCATCAACAAGGTTCGT
ATTATCTTTGATATTACCAAACCTGAAGTTCCCATCACTGGAGGCAAGCT
GGATATGAAAAAGTGCATGCTTCGAGGAGTCGCTCCGATGCATGTCGAGT
ACATGACTAACATGGGAATCAAGGGCTCTATATCTCTGGCAATCGACGTA
GAGAAGTTGGATGGTTTACTTGTATTTCACTCTTACCAAGGG
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