mRNA_751 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A835Z406_9STRA (Phytochrome (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z406_9STRA) HSP 1 Score: 237 bits (605), Expect = 2.110e-79 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG 342
MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG
Sbjct: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG 114
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A835Z0I1_9STRA (Phytochrome (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I1_9STRA) HSP 1 Score: 179 bits (453), Expect = 3.220e-56 Identity = 81/114 (71.05%), Postives = 98/114 (85.96%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG 342
MLYTFD++WNG+V++EFK +D VSYMGLHFPASDIPKVARDLYF NKVR+IFD PE I+G KL++K+CMLRGVAPMH EYM NMGI+GS+S+A+ + L+GLLVFHSY G
Sbjct: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG 114
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A835Z4F3_9STRA (GAF domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F3_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.460e-30 Identity = 62/119 (52.10%), Postives = 80/119 (67.23%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPI----TGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVE-KLDGLLVFHSYQG 342
M Y FD +WNGQV+ E + D VSY+GLHFP +DIP+ ARD+Y +VR IFD+ EV T KLD+ +C+ RGV+ +HV YM NMGI+GS+S+AI + L GLLV HS G
Sbjct: 136 MAYQFDSQWNGQVIFERIIGSDPVSYLGLHFPETDIPQAARDMYLEQRVRFIFDVDSAEVSFDTRGTPIKLDLSECVQRGVSDVHVRYMKNMGIRGSVSIAIIMRGALWGLLVLHSKNG 254
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A835YZ29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ29_9STRA) HSP 1 Score: 118 bits (296), Expect = 1.080e-28 Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPI----TGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVE-KLDGLLVFHSYQG 342
M Y FD +WNGQV+ E + D VSY GLHFP +DIP+ ARD+Y +VR IFD+ EV T KLD+ +C+ RGV+ +HV YM NMGI+G +S+AI + L GLLV HS G
Sbjct: 136 MAYQFDSQWNGQVIFERIIGTDPVSYQGLHFPETDIPQAARDMYLEQRVRFIFDVDSAEVSFDTRGTPFKLDLSECVQRGVSDVHVRYMKNMGIRGFVSIAIIMRGALWGLLVLHSKNG 254
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: UPI0004227404 (ATP-binding protein n=1 Tax=Gramella portivictoriae TaxID=326069 RepID=UPI0004227404) HSP 1 Score: 112 bits (281), Expect = 1.170e-26 Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPIT------GGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLA-IDVEKLDGLLVFH 330
M+Y FDDEWNG+V+ E K KED +++GL +PASDIPK AR L+F NKVRII D+ V IT G LD+ K LRGV+P+H+EY+ NMG+ S++ A I KL GLL H
Sbjct: 165 MVYKFDDEWNGKVIAEAK-KEDLETFLGLQYPASDIPKQARQLFFKNKVRIISDVNYAPVKITPMLDPSGDPLDISKSKLRGVSPIHIEYLQNMGVGSSLTAALISNGKLWGLLACH 280
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A1L7I0P8_9FLAO (Phytochrome, two-component sensor histidine kinase n=2 Tax=Gramella TaxID=292691 RepID=A0A1L7I0P8_9FLAO) HSP 1 Score: 111 bits (277), Expect = 4.050e-26 Identity = 61/120 (50.83%), Postives = 80/120 (66.67%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEV-------PITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLA-IDVEKLDGLLVFHSY 336
M+Y FD+EWNGQVV E + +E S++GLH+PASDIPK AR+L+F N+VRII D+ V PI G LD+ K LRGV+P+H+EY+ NM + S++ A I KL GLL H Y
Sbjct: 165 MVYRFDEEWNGQVVAE-EREEHLESWLGLHYPASDIPKQARELFFKNRVRIISDVNYQPVEITPQFSPINGEPLDLSKSKLRGVSPIHIEYLQNMKVGASLTAALISNGKLWGLLACHHY 283
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: UPI000F872503 (GAF domain-containing protein n=1 Tax=Staphylococcus aureus TaxID=1280 RepID=UPI000F872503) HSP 1 Score: 103 bits (257), Expect = 5.050e-26 Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVS-YMGLHFPASDIPKVARDLYFINKVRII-------FDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVE-KLDGLLVFHSY 336
M+Y FDD WNG VV E + DD+ ++GLH+PA+DIPK AR+LY N +R I + P P++G LDM C+LR V+P+H++Y+ NMG+ S+S+++ E KL GL+ H Y
Sbjct: 19 MVYRFDDMWNGSVVSE--QRRDDIEPFLGLHYPAADIPKQARELYTKNSLRFIAVRDYEPVAMVPPLDPLSGAPLDMSYCVLRSVSPIHIQYLRNMGVSASMSISLLREGKLWGLVACHHY 137
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A542AVW0_9FLAO (Light-regulated signal transduction histidine kinase (Bacteriophytochrome) n=1 Tax=Gramella sp. Hel_I_59 TaxID=1249978 RepID=A0A542AVW0_9FLAO) HSP 1 Score: 109 bits (272), Expect = 1.920e-25 Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEV-------PITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLA-IDVEKLDGLLVFH 330
M+Y FDDEWNG+V+ E K ED +++GL +PASDIPK AR L+F N+VRII D+ V P+ G LD+ K LRGV+P+H+EY+ NMGI S++ A I KL GLL H
Sbjct: 165 MVYKFDDEWNGKVIAEAK-NEDLEAFLGLQYPASDIPKQARQLFFKNRVRIISDVNYAPVKIVPQISPVGGEPLDISKSKLRGVSPIHIEYLQNMGIGASLTAALISNGKLWGLLACH 281
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A1H1QTA9_9FLAO (Bacteriophytochrome (Light-regulated signal transduction histidine kinase) n=2 Tax=Gramella echinicola TaxID=279359 RepID=A0A1H1QTA9_9FLAO) HSP 1 Score: 108 bits (271), Expect = 2.620e-25 Identity = 59/120 (49.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEV-------PITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLA-IDVEKLDGLLVFHSY 336
M+Y FD+EWNG+V+ E K KE D S++GLH+PASDIPK AR+L+ NKVRII D+ V P+ G LD+ LR V+P+H+EY+ NM + S++ A I KL GLL H Y
Sbjct: 164 MIYKFDEEWNGKVIAEEKNKEMD-SWLGLHYPASDIPKQARELFLKNKVRIISDVNYSPVKIVPNFSPLNGQPLDLSNSKLRAVSPIHIEYLQNMKVGASLTAALISNGKLWGLLACHHY 282
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Match: A0A6L6XSH3_9ACTN (SpoIIE family protein phosphatase n=3 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A6L6XSH3_9ACTN) HSP 1 Score: 108 bits (269), Expect = 4.940e-25 Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 1
Query: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPI-------TGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVE-KLDGLLVFHSYQG 342
M+Y FDDEWNG+V+ E + + D S++GLH+PASDIP AR LY +N R+I DI VP+ TG LD+ LR V+P+H+EY++NMG+ S+S+++ V+ +L GL+ H Y G
Sbjct: 229 MVYRFDDEWNGEVIAE-ERRSDLNSFLGLHYPASDIPAQARRLYTVNWSRLIADIGYQPVPLHPIFDPSTGAPLDLSHATLRSVSPIHIEYLSNMGVGASMSISLIVDGELWGLVACHHYSG 349 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153900 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_751 ID=mRNA_751|Name=jgi.p|Trimin1|153900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_2:1335436..1335777+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGTACACATTTGATGACGAATGGAACGGACAAGTGGTGCATGAGTTback to top protein sequence of jgi.p|Trimin1|153900 >Trimin1|153900|gw1.2.326.1 ID=Trimin1|153900|gw1.2.326.1|Name=jgi.p|Trimin1|153900|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRback to top mRNA from alignment at Contig_2:1335436..1335777+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_751 ID=mRNA_751|Name=jgi.p|Trimin1|153900|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_2:1335436..1335777+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_2:1335436..1335777+ >mRNA_751 ID=mRNA_751|Name=jgi.p|Trimin1|153900|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_2:1335436..1335777+ (Tribonema minus UTEX_B_3156 )back to top |