mRNA_7495 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163158
Unique NamemRNA_7495
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: A0A835Z1N3_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N3_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.740e-59
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFMVQHVLIIVQFKISSPFIKRRMPMLLILRHKSQCVNILLKKTLYAYVCCN 276
            VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFMVQHVLIIVQFKISSPFIKRRMPMLLILRHKSQCVNILLKKTLYAYVCCN
Sbjct:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFMVQHVLIIVQFKISSPFIKRRMPMLLILRHKSQCVNILLKKTLYAYVCCN 92
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BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: A0A836CE11_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE11_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.310e-19
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFMVQHVLI 147
            VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWH   V+++   V I
Sbjct:   41 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCI 89
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BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: D3X9C7_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=Ectocarpales TaxID=2877 RepID=D3X9C7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.390e-13
Identity = 29/36 (80.56%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWH 108
            VIIGT+F+GVC++RLY++HFSR HHFGFEAAAWYWH
Sbjct:  135 VIIGTIFLGVCTIRLYLSHFSRQHHFGFEAAAWYWH 170
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BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: A0A2P1G7I4_9CHLO (Cytochrome c oxidase subunit 3 n=2 Tax=Prototheca zopfii TaxID=3112 RepID=A0A2P1G7I4_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 2.240e-13
Identity = 28/43 (65.12%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFM 129
            VIIGT+F+ +C++R+Y+NHFS GHHFGFEAAAWYWH+  V+++
Sbjct:  213 VIIGTIFLAICAVRVYLNHFSSGHHFGFEAAAWYWHMVDVVWL 255
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BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: A0A2U9IZF1_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=20 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A2U9IZF1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.670e-13
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVL 123
            VIIGT+F+ +C++RLY NHFSR HHFGFEAAAWYWH   V+
Sbjct:  147 VIIGTIFLAICTIRLYFNHFSRQHHFGFEAAAWYWHFVDVV 187
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BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: A0A4Y5T8S8_9PHAE (Cytochrome c oxidase subunit 3 n=57 Tax=Dictyotaceae TaxID=2874 RepID=A0A4Y5T8S8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.390e-13
Identity = 28/44 (63.64%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFMV 132
            VIIGT+F+ +C++RLY++HFSR HHFGFEAAAWYWH   V++++
Sbjct:  215 VIIGTIFLSICAVRLYVDHFSRQHHFGFEAAAWYWHFVDVVWLI 258
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BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: UPI0018EB1A7E (cytochrome c oxidase subunit 3 n=1 Tax=Paenibacillus roseus TaxID=2798579 RepID=UPI0018EB1A7E)

HSP 1 Score: 71.2 bits (173), Expect = 8.240e-13
Identity = 28/43 (65.12%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFM 129
            VIIGT+F+ VC++R+Y+ HFS+GHHFGFEAAAWYWH+  V+++
Sbjct:  211 VIIGTIFLFVCTIRVYLGHFSKGHHFGFEAAAWYWHMVDVVWL 253
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BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: A0A3G1GQ31_9CUCU (Cytochrome c oxidase subunit 3 n=1 Tax=Stylosomus rugithorax TaxID=1425630 RepID=A0A3G1GQ31_9CUCU)

HSP 1 Score: 70.9 bits (172), Expect = 1.070e-12
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFMVQHV 141
            VIIGT F+GVC +RLY+NHFS  HHFGFEAAAWYWH   V+++  ++
Sbjct:  206 VIIGTTFLGVCLIRLYMNHFSNIHHFGFEAAAWYWHFVDVVWLFLYI 252
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BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: D3X9E6_SCYLO (Cytochrome c oxidase subunit 3 (Fragment) n=18 Tax=Scytosiphon TaxID=27966 RepID=D3X9E6_SCYLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.390e-12
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFM 129
            VIIGT+F+ +C+ RLY +HFSR HHFGFEAAAWYWH   V+++
Sbjct:  138 VIIGTIFLAICTFRLYFDHFSRQHHFGFEAAAWYWHFVDVVWL 180
[Close]
BLAST of jgi.p|Trimin1|163158 vs. uniprot
Match: D3X9C2_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=Colpomenia peregrina TaxID=27965 RepID=D3X9C2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.530e-12
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWH 108
            VIIGT+F+ +C+LRLY +HFSR HHFGFEAAAWYWH
Sbjct:  135 VIIGTIFLAICTLRLYFDHFSRQHHFGFEAAAWYWH 170
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163158 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1N3_9STRA1.740e-59100.00Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema m... [more]
A0A836CE11_9STRA6.310e-1979.59Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema m... [more]
D3X9C7_9PHAE1.390e-1380.56Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=... [more]
A0A2P1G7I4_9CHLO2.240e-1365.12Cytochrome c oxidase subunit 3 n=2 Tax=Prototheca ... [more]
A0A2U9IZF1_9PHAE2.670e-1370.73Cytochrome c oxidase subunit 3 (Fragment) n=20 Tax... [more]
A0A4Y5T8S8_9PHAE4.390e-1363.64Cytochrome c oxidase subunit 3 n=57 Tax=Dictyotace... [more]
UPI0018EB1A7E8.240e-1365.12cytochrome c oxidase subunit 3 n=1 Tax=Paenibacill... [more]
A0A3G1GQ31_9CUCU1.070e-1263.83Cytochrome c oxidase subunit 3 n=1 Tax=Stylosomus ... [more]
D3X9E6_SCYLO1.390e-1265.12Cytochrome c oxidase subunit 3 (Fragment) n=18 Tax... [more]
D3X9C2_9PHAE1.530e-1277.78Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:344421..344699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163158|e_gw1.24.50.1
KEGG TC3.D.4.4,3.D.4.6
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00016
KEGG ReactionR00081
KEGG ModuleM00155
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG koko:K02276
EC1.9.3.1
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
Preferred namectaE
DescriptionCytochrome c oxidase subunit III
COG categoryC
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG1845@1|root,COG1845@2|Bacteria,1MUCK@1224|Proteobacteria,2TQWA@28211|Alphaproteobacteria,3EYJA@335928|Xanthobacteraceae
Evalue7.76e-11
Seed ortholog639283.Snov_0589
Hectar predicted targeting categoryother localisation
TranscriptId163480
TrackFilteredModels1
ProteinId163158
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163158gene_7495Tribonema minus UTEX_B_3156 geneContig_24 344421..344699 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7495_1exon_7495_1Tribonema minus UTEX_B_3156 exonContig_24 344421..344699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7495CDS_7495Tribonema minus UTEX_B_3156 CDSContig_24 344421..344699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163158Trimin1|163158|e_gw1.24.50.1Tribonema minus UTEX_B_3156 polypeptideContig_24 344421..344699 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7495 ID=mRNA_7495|Name=jgi.p|Trimin1|163158|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_24:344421..344699- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTATTATTGGTACACTTTTTATTGGTGTGTGTTCTTTACGCTTGTATAT
AAATCATTTCAGTCGTGGTCATCATTTTGGCTTTGAAGCTGCTGCTTGGT
ATTGGCATTTGACACATGTTCTGTTCATGGTTCAACATGTCTTAATCATC
GTTCAATTCAAGATTTCCTCCCCGTTTATTAAACGGAGAATGCCAATGCT
CCTGATACTAAGGCATAAAAGCCAATGTGTGAATATTCTGCTAAAAAAAA
CATTATATGCTTATGTTTGTTGTAATTAA
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protein sequence of jgi.p|Trimin1|163158

>Trimin1|163158|e_gw1.24.50.1 ID=Trimin1|163158|e_gw1.24.50.1|Name=jgi.p|Trimin1|163158|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=93bp
VIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHLTHVLFMVQHVLII
VQFKISSPFIKRRMPMLLILRHKSQCVNILLKKTLYAYVCCN*
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mRNA from alignment at Contig_24:344421..344699-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7495 ID=mRNA_7495|Name=jgi.p|Trimin1|163158|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_24:344421..344699- (Tribonema minus UTEX_B_3156 )
GTTATTATTGGTACACTTTTTATTGGTGTGTGTTCTTTACGCTTGTATAT
AAATCATTTCAGTCGTGGTCATCATTTTGGCTTTGAAGCTGCTGCTTGGT
ATTGGCATTTGACACATGTTCTGTTCATGGTTCAACATGTCTTAATCATC
GTTCAATTCAAGATTTCCTCCCCGTTTATTAAACGGAGAATGCCAATGCT
CCTGATACTAAGGCATAAAAGCCAATGTGTGAATATTCTGCTAAAAAAAA
CATTATATGCTTATGTTTGTTGTAATTAA
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Coding sequence (CDS) from alignment at Contig_24:344421..344699-

>mRNA_7495 ID=mRNA_7495|Name=jgi.p|Trimin1|163158|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=279bp|location=Sequence derived from alignment at Contig_24:344421..344699- (Tribonema minus UTEX_B_3156 )
GTTATTATTGGTACACTTTTTATTGGTGTGTGTTCTTTACGCTTGTATAT
AAATCATTTCAGTCGTGGTCATCATTTTGGCTTTGAAGCTGCTGCTTGGT
ATTGGCATTTGACACATGTTCTGTTCATGGTTCAACATGTCTTAATCATC
GTTCAATTCAAGATTTCCTCCCCGTTTATTAAACGGAGAATGCCAATGCT
CCTGATACTAAGGCATAAAAGCCAATGTGTGAATATTCTGCTAAAAAAAA
CATTATATGCTTATGTTTGTTGTAATTAA
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