mRNA_7479 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163211
Unique NamemRNA_7479
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163211 vs. uniprot
Match: A0A835Z1D2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.840e-39
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 
Query:  445 VPSVTMCKALPCXXXXXXXXXXXXXXXXXXXXXXVKVLXXXXXXXXXXXXXXXXLKSPTQTSISNAKFNLQRELQSPSFPMHYKVAICGVNVLFLRLHTYQCYNPENHHSVLVTS 789
            VPSVTMCKALPCXXXXXXXXXXXXXXXXXXXXXXVKVLXXXXXXXXXXXXXXXXLKSPTQTSISNAKFNLQRELQSPSFPMHYKVAICGVNVLFLRLHTYQCYNPENHHSVLVTS
Sbjct:  149 VPSVTMCKALPCXXXXXXXXXXXXXXXXXXXXXXVKVLXXXXXXXXXXXXXXXXLKSPTQTSISNAKFNLQRELQSPSFPMHYKVAICGVNVLFLRLHTYQCYNPENHHSVLVTS 263
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163211 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1D2_9STRA2.840e-39100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:225435..226226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163211|e_gw1.24.95.1
Hectar predicted targeting categoryother localisation
TranscriptId163533
TrackFilteredModels1
ProteinId163211
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163211gene_7479Tribonema minus UTEX_B_3156 geneContig_24 225435..226226 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7479_1exon_7479_1Tribonema minus UTEX_B_3156 exonContig_24 225435..226226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7479CDS_7479Tribonema minus UTEX_B_3156 CDSContig_24 225435..226226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163211Trimin1|163211|e_gw1.24.95.1Tribonema minus UTEX_B_3156 polypeptideContig_24 225435..226226 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7479 ID=mRNA_7479|Name=jgi.p|Trimin1|163211|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=792bp|location=Sequence derived from alignment at Contig_24:225435..226226+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAAAGTGCAAAGTGTCCATGTGCAAAGTGCAAAGTGTTACCATGT
GCAAAGTGCAAAGTGTCACCATGTGCAAAGTGAAGTGCAAAGTGTTACCA
TGTGCAAAGTGCAAAGTGTTACCATGTGCAAAGTGCAAAGTGTTACCGTG
TGCAAAATGCAAAGTGTTACCATGTGCAAAGTGCAAAGTGTCACCATGTG
CAAAGTGCAAAGTGTTACCAAGTGCAAAGTGCAAAGTGTTGCCATGAGCA
AAGTGCAAAGTGTTGCCATGTGCAAAGTGCAAAGTGTTGCCATGTGCAAA
GTGCAAAGTGCAAAGTGTTACCATGTGCAAAGTGCAAAGTGTCACCATGT
GCAAACTGCAAAGTGTCACCATGTGCAAAGTGCAAAGTGTCACCATGTGC
AAAGTGGAAAGTGTCACCATGTGCAACGTGCAAAGTGTTACCATGTGCCA
AGTGTTACCATGTGCAAAGCGTTACCATGTGCAAAGCATTACCATGTGCA
AAGCGTTACCATGTGCAAAGCGTTACCATGTGCAAAGTGTTACCATGTGA
AAGTTTTACCATGTGCAAAGTGTTACCATGTGCAAAGTGTTACCATGTGC
AAAGTGTTGAAATCTCCAACGCAAACTTCAATATCCAACGCGAAATTCAA
TCTCCAACGCGAACTTCAATCTCCATCTTTTCCAATGCACTACAAAGTGG
CAATATGCGGTGTAAATGTGTTATTTCTGCGCCTACATACGTACCAATGT
TACAATCCAGAAAACCATCACTCAGTTTTGGTTACCTCCTGA
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protein sequence of jgi.p|Trimin1|163211

>Trimin1|163211|e_gw1.24.95.1 ID=Trimin1|163211|e_gw1.24.95.1|Name=jgi.p|Trimin1|163211|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=264bp
MCKVQSVHVQSAKCYHVQSAKCHHVQSEVQSVTMCKVQSVTMCKVQSVTV
CKMQSVTMCKVQSVTMCKVQSVTKCKVQSVAMSKVQSVAMCKVQSVAMCK
VQSAKCYHVQSAKCHHVQTAKCHHVQSAKCHHVQSGKCHHVQRAKCYHVP
SVTMCKALPCAKHYHVQSVTMCKALPCAKCYHVKVLPCAKCYHVQSVTMC
KVLKSPTQTSISNAKFNLQRELQSPSFPMHYKVAICGVNVLFLRLHTYQC
YNPENHHSVLVTS*
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mRNA from alignment at Contig_24:225435..226226+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7479 ID=mRNA_7479|Name=jgi.p|Trimin1|163211|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=792bp|location=Sequence derived from alignment at Contig_24:225435..226226+ (Tribonema minus UTEX_B_3156 )
ATGTGCAAAGTGCAAAGTGTCCATGTGCAAAGTGCAAAGTGTTACCATGT
GCAAAGTGCAAAGTGTCACCATGTGCAAAGTGAAGTGCAAAGTGTTACCA
TGTGCAAAGTGCAAAGTGTTACCATGTGCAAAGTGCAAAGTGTTACCGTG
TGCAAAATGCAAAGTGTTACCATGTGCAAAGTGCAAAGTGTCACCATGTG
CAAAGTGCAAAGTGTTACCAAGTGCAAAGTGCAAAGTGTTGCCATGAGCA
AAGTGCAAAGTGTTGCCATGTGCAAAGTGCAAAGTGTTGCCATGTGCAAA
GTGCAAAGTGCAAAGTGTTACCATGTGCAAAGTGCAAAGTGTCACCATGT
GCAAACTGCAAAGTGTCACCATGTGCAAAGTGCAAAGTGTCACCATGTGC
AAAGTGGAAAGTGTCACCATGTGCAACGTGCAAAGTGTTACCATGTGCCA
AGTGTTACCATGTGCAAAGCGTTACCATGTGCAAAGCATTACCATGTGCA
AAGCGTTACCATGTGCAAAGCGTTACCATGTGCAAAGTGTTACCATGTGA
AAGTTTTACCATGTGCAAAGTGTTACCATGTGCAAAGTGTTACCATGTGC
AAAGTGTTGAAATCTCCAACGCAAACTTCAATATCCAACGCGAAATTCAA
TCTCCAACGCGAACTTCAATCTCCATCTTTTCCAATGCACTACAAAGTGG
CAATATGCGGTGTAAATGTGTTATTTCTGCGCCTACATACGTACCAATGT
TACAATCCAGAAAACCATCACTCAGTTTTGGTTACCTCCTGA
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Coding sequence (CDS) from alignment at Contig_24:225435..226226+

>mRNA_7479 ID=mRNA_7479|Name=jgi.p|Trimin1|163211|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=792bp|location=Sequence derived from alignment at Contig_24:225435..226226+ (Tribonema minus UTEX_B_3156 )
ATGTGCAAAGTGCAAAGTGTCCATGTGCAAAGTGCAAAGTGTTACCATGT
GCAAAGTGCAAAGTGTCACCATGTGCAAAGTGAAGTGCAAAGTGTTACCA
TGTGCAAAGTGCAAAGTGTTACCATGTGCAAAGTGCAAAGTGTTACCGTG
TGCAAAATGCAAAGTGTTACCATGTGCAAAGTGCAAAGTGTCACCATGTG
CAAAGTGCAAAGTGTTACCAAGTGCAAAGTGCAAAGTGTTGCCATGAGCA
AAGTGCAAAGTGTTGCCATGTGCAAAGTGCAAAGTGTTGCCATGTGCAAA
GTGCAAAGTGCAAAGTGTTACCATGTGCAAAGTGCAAAGTGTCACCATGT
GCAAACTGCAAAGTGTCACCATGTGCAAAGTGCAAAGTGTCACCATGTGC
AAAGTGGAAAGTGTCACCATGTGCAACGTGCAAAGTGTTACCATGTGCCA
AGTGTTACCATGTGCAAAGCGTTACCATGTGCAAAGCATTACCATGTGCA
AAGCGTTACCATGTGCAAAGCGTTACCATGTGCAAAGTGTTACCATGTGA
AAGTTTTACCATGTGCAAAGTGTTACCATGTGCAAAGTGTTACCATGTGC
AAAGTGTTGAAATCTCCAACGCAAACTTCAATATCCAACGCGAAATTCAA
TCTCCAACGCGAACTTCAATCTCCATCTTTTCCAATGCACTACAAAGTGG
CAATATGCGGTGTAAATGTGTTATTTCTGCGCCTACATACGTACCAATGT
TACAATCCAGAAAACCATCACTCAGTTTTGGTTACCTCCTGA
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