mRNA_7434 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140400
Unique NamemRNA_7434
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: A0A835Z5H6_9STRA (CAP Gly-rich domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H6_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.200e-33
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 159
            GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV
Sbjct:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 53
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BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: C3YMN8_BRAFL (CAP-Gly domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YMN8_BRAFL)

HSP 1 Score: 81.3 bits (199), Expect = 3.300e-19
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 159
            G VKFVG T+FASG WVG++LD   GKNDG V GV YFKC PN GIFVRP+ V
Sbjct:   12 GVVKFVGETEFASGPWVGIELDLDTGKNDGEVKGVRYFKCRPNYGIFVRPDKV 64
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BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: A0A1Y3NMS9_PIRSE (CAP-Gly domain-containing protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NMS9_PIRSE)

HSP 1 Score: 76.3 bits (186), Expect = 2.730e-17
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 159
            G ++F+G+TQFASG W+G++L+   GKN+G++NGV YF C P  G+FVRP MV
Sbjct:    3 GVIRFIGTTQFASGNWIGIELEKPVGKNNGSINGVEYFSCKPLYGVFVRPAMV 55
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BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: A0A7S2IDI9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IDI9_9DINO)

HSP 1 Score: 77.8 bits (190), Expect = 2.740e-17
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 159
            G V+F G+TQFA G W+G++LD   GKNDGTV G  YF C P  GIFVRPNMV
Sbjct:   54 GVVRFAGTTQFAPGEWLGIELDDPAGKNDGTVKGERYFPCKPQHGIFVRPNMV 106
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BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: A0A7S1C7A1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7A1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.990e-17
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 159
            G V++VG T+FA G WVGV+L S  GKNDG+V G  YF+CPPN G+FVRP+ V
Sbjct:   56 GVVRYVGETEFAGGQWVGVELPSAEGKNDGSVKGRVYFRCPPNHGLFVRPSQV 108
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BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: A0A1M2VHS2_TRAPU (Tubulin-folding cofactor B n=2 Tax=Trametes TaxID=5324 RepID=A0A1M2VHS2_TRAPU)

HSP 1 Score: 78.2 bits (191), Expect = 1.590e-16
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 159
            G ++FVG T+FA GTWVG++ D   GKNDG+V G  YF+CPPN+G+FV+P  V
Sbjct:  136 GTIRFVGPTEFAKGTWVGIEYDEPIGKNDGSVKGKKYFECPPNSGVFVKPERV 188
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BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: A0A6P4ZSY8_BRABE (kinesin-like protein KIF13A isoform X4 n=24 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZSY8_BRABE)

HSP 1 Score: 80.9 bits (198), Expect = 1.620e-16
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 159
            G VKFVG T+FASG WVGV+LD   G+NDG V GV YFKC PN GIFVRP+ V
Sbjct: 2294 GVVKFVGETEFASGPWVGVELDMDAGRNDGEVKGVRYFKCRPNYGIFVRPDKV 2346
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BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: A0A6P4Z7V1_BRABE (kinesin-like protein KIF13A isoform X1 n=3 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z7V1_BRABE)

HSP 1 Score: 80.9 bits (198), Expect = 1.620e-16
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 159
            G VKFVG T+FASG WVGV+LD   G+NDG V GV YFKC PN GIFVRP+ V
Sbjct: 2344 GVVKFVGETEFASGPWVGVELDMDAGRNDGEVKGVRYFKCRPNYGIFVRPDKV 2396
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BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: UPI0003F0E44E (kinesin-like protein KIF13A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0E44E)

HSP 1 Score: 80.5 bits (197), Expect = 2.210e-16
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPN 153
            G VKF+G+T F SGTWVGV+LD+  GKN+G V+GV+YF+CPP  GIFVRP+
Sbjct: 1895 GVVKFIGNTTFKSGTWVGVKLDTPTGKNNGQVDGVHYFRCPPKHGIFVRPD 1945
[Close]
BLAST of jgi.p|Trimin1|140400 vs. uniprot
Match: A0A4P9Z3F7_9FUNG (CAP-Gly domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z3F7_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 3.550e-16
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRPNMV 159
            G V+FVG T FA+G WVGV+LD   GKNDGTV G  YF+C PN G+FVR + V
Sbjct:   22 GTVQFVGQTSFATGRWVGVELDEPLGKNDGTVQGRRYFECQPNYGVFVRASQV 74
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140400 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5H6_9STRA3.200e-33100.00CAP Gly-rich domain-containing protein (Fragment) ... [more]
C3YMN8_BRAFL3.300e-1969.81CAP-Gly domain-containing protein (Fragment) n=1 T... [more]
A0A1Y3NMS9_PIRSE2.730e-1756.60CAP-Gly domain-containing protein (Fragment) n=1 T... [more]
A0A7S2IDI9_9DINO2.740e-1764.15Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S1C7A1_9STRA5.990e-1762.26Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1M2VHS2_TRAPU1.590e-1658.49Tubulin-folding cofactor B n=2 Tax=Trametes TaxID=... [more]
A0A6P4ZSY8_BRABE1.620e-1669.81kinesin-like protein KIF13A isoform X4 n=24 Tax=Br... [more]
A0A6P4Z7V1_BRABE1.620e-1669.81kinesin-like protein KIF13A isoform X1 n=3 Tax=Bra... [more]
UPI0003F0E44E2.210e-1666.67kinesin-like protein KIF13A-like n=1 Tax=Saccoglos... [more]
A0A4P9Z3F7_9FUNG3.550e-1662.26CAP-Gly domain-containing protein (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:808249..808407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140400|gw1.31.65.1
BRITEko00000,ko00001,ko03036,ko04131,ko04812
KEGG Pathwayko00563,ko01100,ko04962,ko05016,map00563,map01100,map04962,map05016
KEGG koko:K04648,ko:K05293,ko:K10423
GOsGO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Preferred nameCLIP4
Descriptionmicrotubule motor activity
COG categoryZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5059@1|root,KOG0241@2759|Eukaryota
Evalue5.4e-20
Seed ortholog7739.XP_002602367.1
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDynactin subunit 1
Ec32 orthologEc-24_000670.1
TranscriptId140722
TrackFilteredModels1
ProteinId140400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140400gene_7434Tribonema minus UTEX_B_3156 geneContig_31 808249..808407 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7434_1exon_7434_1Tribonema minus UTEX_B_3156 exonContig_31 808249..808407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7434CDS_7434Tribonema minus UTEX_B_3156 CDSContig_31 808249..808407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140400Trimin1|140400|gw1.31.65.1Tribonema minus UTEX_B_3156 polypeptideContig_31 808249..808407 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7434 ID=mRNA_7434|Name=jgi.p|Trimin1|140400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_31:808249..808407+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGCGGTCAAGTTTGTGGGCAGTACCCAGTTTGCCAGCGGTACATGGGT
GGGTGTGCAGCTGGACAGCACCCATGGCAAGAACGATGGCACCGTAAATG
GAGTGTACTACTTCAAATGCCCACCAAACACTGGCATTTTTGTGAGACCC
AATATGGTT
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protein sequence of jgi.p|Trimin1|140400

>Trimin1|140400|gw1.31.65.1 ID=Trimin1|140400|gw1.31.65.1|Name=jgi.p|Trimin1|140400|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=53bp
GAVKFVGSTQFASGTWVGVQLDSTHGKNDGTVNGVYYFKCPPNTGIFVRP
NMV
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mRNA from alignment at Contig_31:808249..808407+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7434 ID=mRNA_7434|Name=jgi.p|Trimin1|140400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_31:808249..808407+ (Tribonema minus UTEX_B_3156 )
GGCGCGGTCAAGTTTGTGGGCAGTACCCAGTTTGCCAGCGGTACATGGGT
GGGTGTGCAGCTGGACAGCACCCATGGCAAGAACGATGGCACCGTAAATG
GAGTGTACTACTTCAAATGCCCACCAAACACTGGCATTTTTGTGAGACCC
AATATGGTT
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Coding sequence (CDS) from alignment at Contig_31:808249..808407+

>mRNA_7434 ID=mRNA_7434|Name=jgi.p|Trimin1|140400|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=159bp|location=Sequence derived from alignment at Contig_31:808249..808407+ (Tribonema minus UTEX_B_3156 )
GGCGCGGTCAAGTTTGTGGGCAGTACCCAGTTTGCCAGCGGTACATGGGT
GGGTGTGCAGCTGGACAGCACCCATGGCAAGAACGATGGCACCGTAAATG
GAGTGTACTACTTCAAATGCCCACCAAACACTGGCATTTTTGTGAGACCC
AATATGGTT
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