mRNA_7425 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|139698
Unique NamemRNA_7425
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A836CEE3_9STRA (CW-type zinc finger-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE3_9STRA)

HSP 1 Score: 331 bits (848), Expect = 4.210e-115
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
Query:    1 ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQESGGRAGGMMWVQCSACSKWRYIWCNATTAAAERWFCVQNTYDESMASCSAPQE 468
            ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQESGGRAGGMMWVQCSACSKWRYIWCNATTAAAERWFCVQNTYDESMASCSAPQE
Sbjct:    1 ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQESGGRAGGMMWVQCSACSKWRYIWCNATTAAAERWFCVQNTYDESMASCSAPQE 156          
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: D8LD53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD53_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.850e-17
Identity = 57/180 (31.67%), Postives = 83/180 (46.11%), Query Frame = 1
Query:    7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPF------AEQR------------SPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQES--GGRAGGMM--WVQCSACSKWRYIW----CNATTAAAERWFCVQNTYDESMASCSAPQE 468
            +W QCD C+KWR+LP  V   QLP KW+C+MN  D     +C   +E        AE++                              ++A LR F   WARR+   E A ++ +   S  G R       WV+C  C KWR +      +      ++++C+ NT++ES+ASCSAPQE
Sbjct:   67 VWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYD-AARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQE 245          
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A6H5K0G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.170e-16
Identity = 57/180 (31.67%), Postives = 83/180 (46.11%), Query Frame = 1
Query:    7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPF------AEQR------------SPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQES--GGRAGGMM--WVQCSACSKWRYIW----CNATTAAAERWFCVQNTYDESMASCSAPQE 468
            +W QCD C+KWR+LP  V   QLP KW+C+MN  D     +C   +E        AE++                              ++A LR F   WARR+   E A ++ +   S  G R       WV+C  C KWR +      +      ++++C+ NT++ES+ASCSAPQE
Sbjct:  253 VWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYD-VARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQE 431          
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A7S2B7X4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7X4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.470e-15
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   16 QCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASAR-NSAQESGGRAGGMM---WVQCSA--CSKWRYIWCNATTAA-AER---WFCVQNTYDESMASCSAPQE 468
            QCD C KWR+L     A +LP KWYC MN  +D    +C+ PEE   E                  +  +  L+     W RRL  ++ A  R  ++  + G+   +    ++QC    C KWR +  +  +   AER   W+CV NT+DE++ASCSAPQE
Sbjct:    2 QCDKCTKWRRLHGVADADKLPKKWYCTMN--NDPARNNCNAPEEEETE------------------KDPDERLKAHLRLWVRRLQCQDTAEVRLPTSSSTRGKKRPLHEQEYIQCCDPNCGKWRALHRSLDSKTLAERAGAWYCVMNTWDEALASCSAPQE 142          
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A482SCH5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCH5_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 7.710e-15
Identity = 53/184 (28.80%), Postives = 77/184 (41.85%), Query Frame = 1
Query:    1 ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQESGGRAGGMM--------WVQCS--ACSKWRYIWCNATT------------------AAAERWFCVQNTYDESMASCSAPQE 468
            E +WAQC+ C KWR LP  V    LP  W C MN  D ++  +CD PEE + ++   A                    + +   W +R+   + A AR +     G    MM        W++CS  +C KWR I  N  +                       W+C  N++DE+ ASC+APQ+
Sbjct:  104 EPVWAQCNNCDKWRSLPPTVDPNSLPDIWTCDMNIYDPSR-ANCDAPEEQYEKEEDQATTHQ----------------KAYLRLWLKRMRSADRAEARLNIGNGRGAGANMMKKKKPEIEWIRCSNPSCGKWRAISRNIDSNLLLSKLHKNRHFGEDEFGGGGVWYCSMNSWDETTASCAAPQD 270          
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A7R9YG09_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG09_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.240e-13
Identity = 58/177 (32.77%), Postives = 83/177 (46.89%), Query Frame = 1
Query:    7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSA---------------QESGGRAGGMM--WVQCSA--CSKWRYIWCNATTAA-AER---WFCVQNTYDESMASCSAPQE 468
            LW  CD C+KWR+ P +V+   LP KWYC M+   D    +C  PEE + + +S A  +++   L+  V+   + L  F     R L      +  +                   S G A      W++C +  C KWR +  N  T A  ER   W+CV NT+D S+ASCSAP+E
Sbjct:   57 LWVCCDKCQKWRRQPVNVT---LPKKWYCTMSP--DPLRNNCAAPEEDYMKNKS-ARTEAKERRLQMYVQAWHSRLE-FADKAERMLPFHSTGNGTSGXXXXXXXXXXXXXXKKHRSSGAASEATCDWIRCCSIGCGKWRSLPKNLDTKAFVERRTAWYCVMNTWDPSLASCSAPEE 226          
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A1Z5JGZ5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGZ5_FISSO)

HSP 1 Score: 60.5 bits (145), Expect = 1.030e-7
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   10 WAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEE 147
            W QC+ C KWR+LP H+SA++LP  WYC MN    +   +CDDPE+
Sbjct:  880 WVQCEKCDKWRKLPPHISASELPDVWYCDMNTWSTSL--TCDDPED 923          
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A1Z5KI68_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI68_FISSO)

HSP 1 Score: 60.5 bits (145), Expect = 1.030e-7
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   10 WAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEE 147
            W QC+ C KWR+LP H+SA++LP  WYC MN    +   +CDDPE+
Sbjct:  882 WVQCEKCDKWRKLPPHISASELPDVWYCDMNTWSTSL--TCDDPED 925          
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: UPI00103A0B14 (zinc finger CW-type PWWP domain protein 1-like n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103A0B14)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-7
Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 1
Query:    7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPF 153
            LW QCD C +WR LP  + +T+LP KWYC+MN   D     C  PEEP 
Sbjct:   85 LWVQCDDCDRWRYLPHVLDSTELPKKWYCRMNP--DRSAADCSVPEEPI 131          
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: UPI001F875BBE (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F875BBE)

HSP 1 Score: 59.7 bits (143), Expect = 1.840e-7
Identity = 27/49 (55.10%), Postives = 31/49 (63.27%), Query Frame = 1
Query:    7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPF 153
            LWAQCD C +WR LP  +   +LPAKWYC MNA  D +  SC  PE P 
Sbjct:   88 LWAQCDDCDRWRYLPFVLDRHELPAKWYCWMNA--DKEFASCSVPEAPL 134          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A836CEE3_9STRA4.210e-115100.00CW-type zinc finger-domain-containing protein (Fra... [more]
D8LD53_ECTSI5.850e-1731.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0G2_9PHAE1.170e-1631.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B7X4_9STRA2.470e-1534.16Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482SCH5_9ARCH7.710e-1528.80Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7R9YG09_9STRA4.240e-1332.77Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5JGZ5_FISSO1.030e-752.17Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KI68_FISSO1.030e-752.17Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
UPI00103A0B141.200e-751.02zinc finger CW-type PWWP domain protein 1-like n=1... [more]
UPI001F875BBE1.840e-755.10Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:750403..750870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|139698|gw1.31.55.1
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141
DescriptionCW-type Zinc Finger
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGs2E11X@1|root,2S8EJ@2759|Eukaryota
Evalue1.88e-18
Seed ortholog2880.D8LD53
Hectar predicted targeting categoryother localisation
TranscriptId140020
TrackFilteredModels1
ProteinId139698
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139698gene_7425Tribonema minus UTEX_B_3156 geneContig_31 750403..750870 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7425_1exon_7425_1Tribonema minus UTEX_B_3156 exonContig_31 750403..750870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7425CDS_7425Tribonema minus UTEX_B_3156 CDSContig_31 750403..750870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139698Trimin1|139698|gw1.31.55.1Tribonema minus UTEX_B_3156 polypeptideContig_31 750403..750870 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7425 ID=mRNA_7425|Name=jgi.p|Trimin1|139698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_31:750403..750870+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGCGTTTGTGGGCACAGTGCGACGCCTGCAGGAAATGGCGCCAGCTGCC
AAAACATGTAAGCGCCACGCAGCTGCCCGCCAAGTGGTACTGCAAGATGA
ACGCAACGGATGATACACAGCACGGGAGCTGCGACGACCCCGAGGAGCCC
TTTGCGGAGCAGAGGTCGCCTGCCGTCCCGCAATCAGAGCCGCTGCATCT
GCGGAGGCGCGTTGAGACGCGGGAGGCGACGCTCCGCACATTCTGCGGCA
GCTGGGCGAGGCGGCTCGCTCTCGAGGAGCATGCGAGTGCTCGCAACTCG
GCGCAGGAGAGCGGCGGACGCGCGGGCGGCATGATGTGGGTGCAGTGCTC
CGCATGCTCCAAGTGGCGCTACATATGGTGCAATGCCACTACGGCCGCGG
CGGAGCGGTGGTTCTGCGTTCAGAACACGTATGACGAGAGCATGGCGAGC
TGCAGCGCGCCTCAGGAG
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protein sequence of jgi.p|Trimin1|139698

>Trimin1|139698|gw1.31.55.1 ID=Trimin1|139698|gw1.31.55.1|Name=jgi.p|Trimin1|139698|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEP
FAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNS
AQESGGRAGGMMWVQCSACSKWRYIWCNATTAAAERWFCVQNTYDESMAS
CSAPQE
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mRNA from alignment at Contig_31:750403..750870+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7425 ID=mRNA_7425|Name=jgi.p|Trimin1|139698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_31:750403..750870+ (Tribonema minus UTEX_B_3156 )
GAGCGTTTGTGGGCACAGTGCGACGCCTGCAGGAAATGGCGCCAGCTGCC AAAACATGTAAGCGCCACGCAGCTGCCCGCCAAGTGGTACTGCAAGATGA ACGCAACGGATGATACACAGCACGGGAGCTGCGACGACCCCGAGGAGCCC TTTGCGGAGCAGAGGTCGCCTGCCGTCCCGCAATCAGAGCCGCTGCATCT GCGGAGGCGCGTTGAGACGCGGGAGGCGACGCTCCGCACATTCTGCGGCA GCTGGGCGAGGCGGCTCGCTCTCGAGGAGCATGCGAGTGCTCGCAACTCG GCGCAGGAGAGCGGCGGACGCGCGGGCGGCATGATGTGGGTGCAGTGCTC CGCATGCTCCAAGTGGCGCTACATATGGTGCAATGCCACTACGGCCGCGG CGGAGCGGTGGTTCTGCGTTCAGAACACGTATGACGAGAGCATGGCGAGC TGCAGCGCGCCTCAGGAG
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Coding sequence (CDS) from alignment at Contig_31:750403..750870+

>mRNA_7425 ID=mRNA_7425|Name=jgi.p|Trimin1|139698|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_31:750403..750870+ (Tribonema minus UTEX_B_3156 )
GAGCGTTTGTGGGCACAGTGCGACGCCTGCAGGAAATGGCGCCAGCTGCC
AAAACATGTAAGCGCCACGCAGCTGCCCGCCAAGTGGTACTGCAAGATGA
ACGCAACGGATGATACACAGCACGGGAGCTGCGACGACCCCGAGGAGCCC
TTTGCGGAGCAGAGGTCGCCTGCCGTCCCGCAATCAGAGCCGCTGCATCT
GCGGAGGCGCGTTGAGACGCGGGAGGCGACGCTCCGCACATTCTGCGGCA
GCTGGGCGAGGCGGCTCGCTCTCGAGGAGCATGCGAGTGCTCGCAACTCG
GCGCAGGAGAGCGGCGGACGCGCGGGCGGCATGATGTGGGTGCAGTGCTC
CGCATGCTCCAAGTGGCGCTACATATGGTGCAATGCCACTACGGCCGCGG
CGGAGCGGTGGTTCTGCGTTCAGAACACGTATGACGAGAGCATGGCGAGC
TGCAGCGCGCCTCAGGAG
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