mRNA_7425 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A836CEE3_9STRA (CW-type zinc finger-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE3_9STRA) HSP 1 Score: 331 bits (848), Expect = 4.210e-115 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 Query: 1 ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQESGGRAGGMMWVQCSACSKWRYIWCNATTAAAERWFCVQNTYDESMASCSAPQE 468 ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQESGGRAGGMMWVQCSACSKWRYIWCNATTAAAERWFCVQNTYDESMASCSAPQE Sbjct: 1 ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQESGGRAGGMMWVQCSACSKWRYIWCNATTAAAERWFCVQNTYDESMASCSAPQE 156
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: D8LD53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD53_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 5.850e-17 Identity = 57/180 (31.67%), Postives = 83/180 (46.11%), Query Frame = 1 Query: 7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPF------AEQR------------SPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQES--GGRAGGMM--WVQCSACSKWRYIW----CNATTAAAERWFCVQNTYDESMASCSAPQE 468 +W QCD C+KWR+LP V QLP KW+C+MN D +C +E AE++ ++A LR F WARR+ E A ++ + S G R WV+C C KWR + + ++++C+ NT++ES+ASCSAPQE Sbjct: 67 VWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYD-AARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQE 245
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A6H5K0G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G2_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.170e-16 Identity = 57/180 (31.67%), Postives = 83/180 (46.11%), Query Frame = 1 Query: 7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPF------AEQR------------SPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQES--GGRAGGMM--WVQCSACSKWRYIW----CNATTAAAERWFCVQNTYDESMASCSAPQE 468 +W QCD C+KWR+LP V QLP KW+C+MN D +C +E AE++ ++A LR F WARR+ E A ++ + S G R WV+C C KWR + + ++++C+ NT++ES+ASCSAPQE Sbjct: 253 VWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYD-VARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIKCAEKAKSKLAPSMSTRGKRKAPSQAQWVRCQNCGKWRALLRCMDASLFLGHGQQFYCLMNTWNESLASCSAPQE 431
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A7S2B7X4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7X4_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.470e-15 Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 1 Query: 16 QCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASAR-NSAQESGGRAGGMM---WVQCSA--CSKWRYIWCNATTAA-AER---WFCVQNTYDESMASCSAPQE 468 QCD C KWR+L A +LP KWYC MN +D +C+ PEE E + + L+ W RRL ++ A R ++ + G+ + ++QC C KWR + + + AER W+CV NT+DE++ASCSAPQE Sbjct: 2 QCDKCTKWRRLHGVADADKLPKKWYCTMN--NDPARNNCNAPEEEETE------------------KDPDERLKAHLRLWVRRLQCQDTAEVRLPTSSSTRGKKRPLHEQEYIQCCDPNCGKWRALHRSLDSKTLAERAGAWYCVMNTWDEALASCSAPQE 142
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A482SCH5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCH5_9ARCH) HSP 1 Score: 79.3 bits (194), Expect = 7.710e-15 Identity = 53/184 (28.80%), Postives = 77/184 (41.85%), Query Frame = 1 Query: 1 ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSAQESGGRAGGMM--------WVQCS--ACSKWRYIWCNATT------------------AAAERWFCVQNTYDESMASCSAPQE 468 E +WAQC+ C KWR LP V LP W C MN D ++ +CD PEE + ++ A + + W +R+ + A AR + G MM W++CS +C KWR I N + W+C N++DE+ ASC+APQ+ Sbjct: 104 EPVWAQCNNCDKWRSLPPTVDPNSLPDIWTCDMNIYDPSR-ANCDAPEEQYEKEEDQATTHQ----------------KAYLRLWLKRMRSADRAEARLNIGNGRGAGANMMKKKKPEIEWIRCSNPSCGKWRAISRNIDSNLLLSKLHKNRHFGEDEFGGGGVWYCSMNSWDETTASCAAPQD 270
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A7R9YG09_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG09_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.240e-13 Identity = 58/177 (32.77%), Postives = 83/177 (46.89%), Query Frame = 1 Query: 7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPFAEQRSPAVPQSEPLHLRRRVETREATLRTFCGSWARRLALEEHASARNSA---------------QESGGRAGGMM--WVQCSA--CSKWRYIWCNATTAA-AER---WFCVQNTYDESMASCSAPQE 468 LW CD C+KWR+ P +V+ LP KWYC M+ D +C PEE + + +S A +++ L+ V+ + L F R L + + S G A W++C + C KWR + N T A ER W+CV NT+D S+ASCSAP+E Sbjct: 57 LWVCCDKCQKWRRQPVNVT---LPKKWYCTMSP--DPLRNNCAAPEEDYMKNKS-ARTEAKERRLQMYVQAWHSRLE-FADKAERMLPFHSTGNGTSGXXXXXXXXXXXXXXKKHRSSGAASEATCDWIRCCSIGCGKWRSLPKNLDTKAFVERRTAWYCVMNTWDPSLASCSAPEE 226
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A1Z5JGZ5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGZ5_FISSO) HSP 1 Score: 60.5 bits (145), Expect = 1.030e-7 Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 Query: 10 WAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEE 147 W QC+ C KWR+LP H+SA++LP WYC MN + +CDDPE+ Sbjct: 880 WVQCEKCDKWRKLPPHISASELPDVWYCDMNTWSTSL--TCDDPED 923
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: A0A1Z5KI68_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI68_FISSO) HSP 1 Score: 60.5 bits (145), Expect = 1.030e-7 Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 Query: 10 WAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEE 147 W QC+ C KWR+LP H+SA++LP WYC MN + +CDDPE+ Sbjct: 882 WVQCEKCDKWRKLPPHISASELPDVWYCDMNTWSTSL--TCDDPED 925
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: UPI00103A0B14 (zinc finger CW-type PWWP domain protein 1-like n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103A0B14) HSP 1 Score: 60.1 bits (144), Expect = 1.200e-7 Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 1 Query: 7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPF 153 LW QCD C +WR LP + +T+LP KWYC+MN D C PEEP Sbjct: 85 LWVQCDDCDRWRYLPHVLDSTELPKKWYCRMNP--DRSAADCSVPEEPI 131
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Match: UPI001F875BBE (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F875BBE) HSP 1 Score: 59.7 bits (143), Expect = 1.840e-7 Identity = 27/49 (55.10%), Postives = 31/49 (63.27%), Query Frame = 1 Query: 7 LWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPF 153 LWAQCD C +WR LP + +LPAKWYC MNA D + SC PE P Sbjct: 88 LWAQCDDCDRWRYLPFVLDRHELPAKWYCWMNA--DKEFASCSVPEAPL 134 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139698 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7425 ID=mRNA_7425|Name=jgi.p|Trimin1|139698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_31:750403..750870+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGCGTTTGTGGGCACAGTGCGACGCCTGCAGGAAATGGCGCCAGCTGCCback to top protein sequence of jgi.p|Trimin1|139698 >Trimin1|139698|gw1.31.55.1 ID=Trimin1|139698|gw1.31.55.1|Name=jgi.p|Trimin1|139698|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp ERLWAQCDACRKWRQLPKHVSATQLPAKWYCKMNATDDTQHGSCDDPEEPback to top mRNA from alignment at Contig_31:750403..750870+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7425 ID=mRNA_7425|Name=jgi.p|Trimin1|139698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_31:750403..750870+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_31:750403..750870+ >mRNA_7425 ID=mRNA_7425|Name=jgi.p|Trimin1|139698|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_31:750403..750870+ (Tribonema minus UTEX_B_3156 )back to top |