mRNA_7418 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164463
Unique NamemRNA_7418
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: A0A835Z1H9_9STRA (SF3 helicase domain-containing protein (Fragment) n=6 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H9_9STRA)

HSP 1 Score: 700 bits (1807), Expect = 8.370e-254
Identity = 350/357 (98.04%), Postives = 353/357 (98.88%), Query Frame = 1
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVDIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGVDPALILCSSAFSGYNNYRARQEPAQPPIKKRDMHEQTAAKGFA 1071
            DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAV+IDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAG+ASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMP+IKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLA VVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREG DPALILCSSAFSGYNNYRARQEPA PPIKKRDMHEQ AAKGFA
Sbjct:    9 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGSASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAGVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYRARQEPALPPIKKRDMHEQMAAKGFA 365          
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: A0A835YS19_9STRA (D5_N domain-containing protein n=5 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS19_9STRA)

HSP 1 Score: 653 bits (1685), Expect = 5.080e-226
Identity = 333/357 (93.28%), Postives = 336/357 (94.12%), Query Frame = 1
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVDIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGVDPALILCSSAFSGYNNYRARQEPAQPPIKKRDMHEQTAAKGFA 1071
            DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAV+IDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLG SARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALR            G  +DAQMIKYISGGADISGRELFG QTSFSPTAVP ANTNEMP+IKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREG DPALILCSSAFSGYNN RARQEPA PPIKKRDMHEQ AAKGFA
Sbjct:  614 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGCSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRAT---------GGRCVDAQMIKYISGGADISGRELFGKQTSFSPTAVPRANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNSRARQEPALPPIKKRDMHEQMAAKGFA 961          
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: A0A835Z1L1_9STRA (D5_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L1_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.250e-55
Identity = 125/335 (37.31%), Postives = 178/335 (53.13%), Query Frame = 1
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVDIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEPAIMQRIEIIPCDAK-FRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGVDPALIL-----CSSAFSGYN 987
            D+ F  LLD +KD+ S  +GVV+L TATLRPRVR D L  A+   ++ + P +  + + + D+TL+   RL RP  LE + R++GYSITGH REEIIV  +G  A N KG++  LL  VL  ++Y AP+S +       AGAASS M AL G R+  +DE+P     D Q  + ++GGA I  REL+  Q SF        N N    ++   A ++RI   P D +       +    D  +  H + + K++ NL   AF +  V  AK+WYE GLG  P CC         +N  +  WI + CE+G  EG+  +  +     C+S   G N
Sbjct:   13 DKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLS--ERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGA-NSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDEPLNDTQF-RLLAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVG--EGLMASTKMAWNDFCASRPEGNN 341          
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: A0A3C1SNC0_9GAMM (SF3 helicase domain-containing protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3C1SNC0_9GAMM)

HSP 1 Score: 113 bits (283), Expect = 1.450e-23
Identity = 84/300 (28.00%), Postives = 143/300 (47.67%), Query Frame = 1
Query:   22 LDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVDIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKA-EPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDEC 918
            LD  + + + +NG ++L+  TLR   R D+LT   +I Y  D+   P   + L+++     +      L+  + R +GYS+TG VRE++++   G  + NGK +  ++++++LG +  QA    L A +        + +    G R+V   E   G   +  ++K ++GG  I+ R +F    +F PT   W +TN  P I+  + AI +RI +IP + KF  PG+ +   D           KL + +P    +A  V+    W   GL   P   K A   +  E D L +W+ D C
Sbjct:  444 LDKGRFLLNAKNGTIDLSAGTLRGHRRVDLLTHDTEIVYRPDAAA-PTWERFLSEVFDGDAD------LIRFVQRAVGYSLTGDVREQVLLICHGNGS-NGKSVFLNIVRKLLGKLALQAAPDLLMADRHRRHPTEQADLF---GKRLVVCQETAEGRRFNEALVKQLTGGDAITARRMFEDNWTFEPTHKLWLSTNHRPEIRGTDHAIWRRIRLIPFNVKFHIPGEGEPVKDTG------MEAKLTDEMP--GIMAWAVRGCLDWQREGL-RAPEAVKAATANYQQEQDVLAAWLADCC 723          
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: A0A3D2VPM9_9GAMM (SF3 helicase domain-containing protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3D2VPM9_9GAMM)

HSP 1 Score: 112 bits (281), Expect = 2.020e-23
Identity = 98/354 (27.68%), Postives = 154/354 (43.50%), Query Frame = 1
Query:   22 LDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVDIDY--NADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKA-EPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVE--AFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGVDPALILCSSAFSGYNNYRARQEPAQPPIKKRDMHEQTAAKGF 1068
            LD    + +  NG V+L T  LRP  R D+LT  V+I Y  NA +P            T           L++ + R +GYS+TG VRE++++   G  + NGK +  ++L+++LG +  QA    L A K        + +    G R++   E   G   +  ++K ++GG  I  R +      F+PT   W +TN  P IK  + AI +RI +IP + KF   G+ +            KN  +   L  E    LA  V     W   GLG+  A  + A   +  E D L +WI + C +G R     A +  S +       R  ++  + P  +R    +   +GF
Sbjct:  219 LDKGHFLLNASNGTVDLTTGVLRPHERADLLTHDVEIPYLQNATAP----AWLAFLHSTFGGD-----ADLIQFVQRAVGYSLTGDVREQVLLICHGVGS-NGKSVFLNILRKLLGGLAIQAAPDLLMADKQRRHPTEQADLF---GKRIIVCQETGEGRRFNETLVKQLTGGDGIRARRMHEDFWEFNPTHKLWLSTNHKPEIKGTDYAIWRRIRLIPFNVKFTDDGEPR------------KNPDMERQLTAELPGILAWAVAGCLDWQRNGLGKAEAV-EAATANYQQEMDVLAAWIGECCVVGKRFEAKAADLYASYS-------RWCEQSGERPDSQRKFGMRLTERGF 539          
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: A0A1L9GPG1_9BURK (SF3 helicase domain-containing protein n=1 Tax=Polynucleobacter sp. MWH-Adler-W8 TaxID=1819727 RepID=A0A1L9GPG1_9BURK)

HSP 1 Score: 112 bits (281), Expect = 2.590e-23
Identity = 89/305 (29.18%), Postives = 148/305 (48.52%), Query Frame = 1
Query:   19 LLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVDIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEP-AIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEA--FLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECEL 924
            LL+ +  +   +NGVV+L T  L       ++T+  + +Y  D+ + P+ ++ L ++           AL++ + R+LGY+ TG V EEI+V   G  A NGK ++ +++Q V G        S L + +     +  S +  L G R + L+E+ +G  LD Q++K ++G   IS R L+    ++ P+   W  TN  PV+K +   I +R+ +IP   KF     A+   D N          L E L  EA   LA ++Q A +WY+GGL   P   K     +  E+D L  ++ +  E 
Sbjct:  462 LLNHDAYLLGVKNGVVDLKTGMLIQPNPTMLMTKQCNANYLTDT-QCPQWLKFLNEVFQG------NQALVDSIQRLLGYTFTGSVTEEIMVICYGFGA-NGKSVMSNVIQHVAGSYGKTGSPSLLKS-RRDDDSSPRSDIAGLAGYRYISLNEMQSGDRLDEQVVKLLAGREAISARALYKDHMTYKPSGKAWLKTNHKPVVKEDDDGIWRRLVVIPFGRKF-----AEVERDPN----------LEEKLTQEADGILAWIIQGAVKWYQGGLSICPTI-KQESTEYRTESDLLGHFLEERVEF 741          
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: A0A1Y1IMX7_KLENI (SF3 helicase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMX7_KLENI)

HSP 1 Score: 112 bits (281), Expect = 2.730e-23
Identity = 99/349 (28.37%), Postives = 155/349 (44.41%), Query Frame = 1
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVDIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRI-LGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAV---SAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIK-AEPAIMQRIEIIPCDAKFRTPG--DAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGG--------LGEKPACCKLACDAFAAENDTLQSWINDECELGPREGVDPALILCSSAFSGYNNYRAR 1002
            D +  KL+D + D   C NGV++L T  L       + TR+  + Y   S         + D+        N    + R L++ LGY++TGH  EEI     G  + NGK  ++  LQ+  G   Y  P S     KA    + GAASSH++AL+GAR+   DE      +++  IK ++GG  ++ RELF    SF PT      TN  P I  A+  +++R+ ++P    ++     D   P+     TH    T L  +   E  L  VV+ +  WY           L   PA    A D +  E D ++ ++ + C++GP      A +L        ++ +AR
Sbjct:  522 DPEMIKLMDCDIDSVGCPNGVLDLRTGILSFAHPSQLCTRSTGVRYMGLSHNTDRFDAFVMDL-------FNSDESIVRWLQLFLGYALTGHTSEEIFCIWYGAGS-NGKSALKMALQKAFGS--YYTPMSKDCIIKAGGKRAEGAASSHLVALKGARLALCDESEESQVINSACIKEMTGGGAVTCRELFQKCESFVPTHANVLLTNHKPSIADADGGLLRRVSLLPFRNSYKVAEEVDPNDPHSKPQSTHL--KTWLESSEGAEECLVWVVRGSVEWYARQSANPAAKVLAPLPAPMAAAFDEYLREFDDMRMFLKEFCDIGPTFVAPSADLLARFNAEMNSDLKAR 858          
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: A0A4P6JVW9_9CHLR (SF3 helicase domain-containing protein n=1 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=A0A4P6JVW9_9CHLR)

HSP 1 Score: 112 bits (281), Expect = 3.060e-23
Identity = 92/320 (28.75%), Postives = 145/320 (45.31%), Query Frame = 1
Query:   40 IFSCQNGVVELATATLRPRVRKDMLTRAVDIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAV-SAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKA-EPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGVDPALILCSSAFSGYNNY 993
            + +  +GV++L T  LRP   +D +       +       P   Q L +I    P+R +  A L+RL    GYSITG   E +   L G   RNGK  + ++L++VLG           T+     S GA + H+  L+G R++  +E   G  L+   IK+++GG++IS R+L G Q SF PT +    TN  P   A + A  +R  +I  D K R     K  Y+    +  +   K   +      LA +V+   RW + GL   P+   L  + +  E D L ++I D C + P      A +  S  ++ Y  +
Sbjct:  570 LLATPSGVLDLRTGQLRPGRPEDFIRTVCPTKWTGLETPCPRFEQFLQEIFEDKPDRTSVIAFLQRLF---GYSITGLTCEAVFPILFGEEGRNGKDTLLNVLREVLGPHAGAVSHDVFTSSDRFRSGGAPTPHLCDLQGKRLIWGNETRQGECLNVAQIKWLTGGSEISARQLHGEQFSFQPTHLMLLMTNYKPQADARDKAFWERACLI--DFKMRFVDRPKETYERKKDSTLLGRLKAERS----GILAWLVRGCLRWQQVGLNT-PSSVLLWTERYREEEDNLLAFIGDCCIVRP-----DAEVRASELYNAYKEW 874          
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: UPI000AB7246B (Uncharacterized protein n=2 Tax=Croceicoccus mobilis TaxID=1703339 RepID=UPI000AB7246B)

HSP 1 Score: 110 bits (274), Expect = 2.030e-22
Identity = 96/301 (31.89%), Postives = 141/301 (46.84%), Query Frame = 1
Query:   22 LDVNKDIFSCQNGVVELATATLRPRVRKDML-TRAVDIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIKAEP-AIMQRIEIIPCDAKFRTPG-----DAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGG---LGEKPACCKLACDAFAAENDTL 894
            LD N  +    NGVV+L T  L P  R DML TR  + DY+  +   P  +Q L ++           A +  + R LGY++TG   EEIIVF +G  A NGK I  +++ +++G     AP S L   +    G      M L GAR+V ++ELPAG+ +D Q +K ++G   IS REL+    +F P    W  TN  P+IK +   I +RI ++P   KF         +AK   + N    ++     +        L+  + A +R Y      LGE  A C +A  A    +  L
Sbjct:  450 LDANPMLLGVGNGVVDLTTGALVPN-RSDMLITRHCEADYDM-AATCPRWVQFLDEVFAGDQ------ATIHSVQRSLGYTLTGLNTEEIIVFCIGFGA-NGKSIFGNIVNRIIGGYSKVAPHSLLATRRRDDHGPRGDIAM-LEGARLVSVNELPAGMQMDEQAVKALAGREPISARELYEGFRTFDPRFTVWVRTNHRPIIKGDDDGIWRRIIVLPFRQKFEGASCDKHLEAKLWAERNGILRWMIEGARQYLATGNLSLSPTILAEQRQYRSDSDLLGEFLADCTIADPAGRVHDQEL 740          
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Match: A0A2D5XZC9_9ARCH (SF3 helicase domain-containing protein n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A2D5XZC9_9ARCH)

HSP 1 Score: 109 bits (273), Expect = 2.750e-22
Identity = 91/296 (30.74%), Postives = 146/296 (49.32%), Query Frame = 1
Query:   22 LDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVDIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPVIK-AEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWI 906
            LD +  + + +NG ++L T TLR   R D LT  +DIDY+ D+   P   Q L +I         +P ++E L R+ GY+ TG   E+ ++  +G+ A NGK    + +  VLG +    P S   A +  + G++++ + +LRG R+  + E  A   L   ++K  +GG  ++ R L+ +Q SF P  +    TN  P IK A+  I +RI +      F    D + P+          + KLR+  P    L  +V  A++WYEGGLG+ P   K A   +   +D L  +I
Sbjct:  452 LDRHPHLLNVRNGTIDLRTGTLRDHDRGDWLTHRLDIDYDPDA-EAPRWDQFLPEIFPT------QPEMVEWLQRVCGYAATGETVEQCLIVCVGKGA-NGKSAFWNAIGHVLGPLCGVVPFS---AFEKRAPGSSTADLASLRGKRLCLVQEGEANTTLAESVLKRATGGDLVAARNLYKSQMSFQPEFLIVMATNSAPRIKGADEGIWRRIRLSNWTRFFTE--DERDPW---------LSAKLRDESP--GILRWIVDGARQWYEGGLGDPPVI-KQASRNYRHTSDELAGFI 722          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164463 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1H9_9STRA8.370e-25498.04SF3 helicase domain-containing protein (Fragment) ... [more]
A0A835YS19_9STRA5.080e-22693.28D5_N domain-containing protein n=5 Tax=Tribonema m... [more]
A0A835Z1L1_9STRA2.250e-5537.31D5_N domain-containing protein n=1 Tax=Tribonema m... [more]
A0A3C1SNC0_9GAMM1.450e-2328.00SF3 helicase domain-containing protein n=1 Tax=Can... [more]
A0A3D2VPM9_9GAMM2.020e-2327.68SF3 helicase domain-containing protein n=1 Tax=Can... [more]
A0A1L9GPG1_9BURK2.590e-2329.18SF3 helicase domain-containing protein n=1 Tax=Pol... [more]
A0A1Y1IMX7_KLENI2.730e-2328.37SF3 helicase domain-containing protein n=1 Tax=Kle... [more]
A0A4P6JVW9_9CHLR3.060e-2328.75SF3 helicase domain-containing protein n=1 Tax=Kte... [more]
UPI000AB7246B2.030e-2231.89Uncharacterized protein n=2 Tax=Croceicoccus mobil... [more]
A0A2D5XZC9_9ARCH2.750e-2230.74SF3 helicase domain-containing protein n=1 Tax=Can... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:699164..700342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164463|e_gw1.31.126.1
BRITEko00000
KEGG koko:K06919
DescriptionD5 N terminal like
COG categoryS
Max annot lvl1224|Proteobacteria
EggNOG OGsCOG3378@1|root,COG3378@2|Bacteria,1MV7I@1224|Proteobacteria,42YMP@68525|delta/epsilon subdivisions,2WUNJ@28221|Deltaproteobacteria,2MGFT@213115|Desulfovibrionales
Evalue1.51e-29
Seed ortholog573370.DMR_15020
Hectar predicted targeting categoryother localisation
TranscriptId164785
TrackFilteredModels1
ProteinId164463
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164463gene_7418Tribonema minus UTEX_B_3156 geneContig_31 699164..700342 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7418_1exon_7418_1Tribonema minus UTEX_B_3156 exonContig_31 699164..700342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7418CDS_7418Tribonema minus UTEX_B_3156 CDSContig_31 699164..700342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164463Trimin1|164463|e_gw1.31.126.1Tribonema minus UTEX_B_3156 polypeptideContig_31 699164..700342 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7418 ID=mRNA_7418|Name=jgi.p|Trimin1|164463|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1179bp|location=Sequence derived from alignment at Contig_31:699164..700342- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGAGGATTTTGAAAAGCTACTTGACGTCAACAAGGACATCTTCAGCTG
CCAAAACGGCGTGGTGGAGCTGGCCACTGCCACGCTTCGCCCGCGCGTGC
GGAAGGACATGCTGACCCGTGCAGTTGACATCGACTACAATGCTGACTCG
CCGCGCATCCCTGAAGTTATGCAGCTTCTGACCGACATCACCCTCGCCGC
GCCGAATCGCCTCAACCGCCCAGCGCTGCTGGAGCGTCTGCTGCGCATAC
TGGGTTACTCCATCACGGGCCACGTGCGCGAGGAGATCATCGTATTCCTT
CTAGGCCGCAGCGCGCGCAACGGCAAGGGCATCATCGAGAGCCTGCTGCA
GCAGGTTCTCGGCTGCATGTTCTACCAGGCGCCGCAGAGCTTTCTGACGG
CATGCAAGGCGGTGTCGGCGGGTGCCGCGTCGTCGCACATGATGGCGCTA
CGCGGTGCGCGCGTGGTCCACCTCGACGAGCTACCGGCGGGCGTTGCGTT
GGACGCGCAGATGATCAAGTACATCAGCGGCGGTGCCGACATCTCGGGGC
GAGAGCTGTTTGGCACGCAGACGTCGTTTAGCCCAACGGCAGTTCCGTGG
GCCAACACCAACGAGATGCCAGTCATCAAGGCGGAGCCGGCGATAATGCA
ACGCATTGAGATCATCCCCTGCGATGCCAAGTTTCGCACGCCCGGGGATG
CCAAGTTCCCCTATGACGCCAATGATAAGACACACTTCATCAAGAACACC
AAACTGCGCGAAAACCTGCCCGTGGAGGCGTTCCTGGCAGTGGTGGTGCA
GGCGGCCAAGAGGTGGTACGAGGGTGGGCTGGGGGAGAAACCGGCTTGCT
GCAAGCTGGCATGCGACGCTTTTGCCGCCGAAAACGACACGCTGCAAAGC
TGGATCAACGACGAGTGTGAGCTGGGACCCAGGGAGGGCGTCGATCCGGC
GCTCATCTTGTGCAGCAGCGCATTCAGCGGTTACAACAACTACCGCGCGC
GCCAGGAGCCGGCGCAACCGCCAATCAAGAAACGCGACATGCACGAGCAG
ACGGCGGCCAAGGGGTTTGCCAGCACGCTGCTGCATGGGCGCGCAGCATA
CGCCCGAAAATGCAGTCTCTCGCCTATGCCTCAAGCTCAGCAATCAAGGC
GCAGTTGCCAGCAGAGCTGGCACTGCTGA
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protein sequence of jgi.p|Trimin1|164463

>Trimin1|164463|e_gw1.31.126.1 ID=Trimin1|164463|e_gw1.31.126.1|Name=jgi.p|Trimin1|164463|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=393bp
DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVDIDYNADS
PRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFL
LGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMAL
RGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPW
ANTNEMPVIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNT
KLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQS
WINDECELGPREGVDPALILCSSAFSGYNNYRARQEPAQPPIKKRDMHEQ
TAAKGFASTLLHGRAAYARKCSLSPMPQAQQSRRSCQQSWHC*
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mRNA from alignment at Contig_31:699164..700342-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7418 ID=mRNA_7418|Name=jgi.p|Trimin1|164463|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1179bp|location=Sequence derived from alignment at Contig_31:699164..700342- (Tribonema minus UTEX_B_3156 )
GACGAGGATTTTGAAAAGCTACTTGACGTCAACAAGGACATCTTCAGCTG CCAAAACGGCGTGGTGGAGCTGGCCACTGCCACGCTTCGCCCGCGCGTGC GGAAGGACATGCTGACCCGTGCAGTTGACATCGACTACAATGCTGACTCG CCGCGCATCCCTGAAGTTATGCAGCTTCTGACCGACATCACCCTCGCCGC GCCGAATCGCCTCAACCGCCCAGCGCTGCTGGAGCGTCTGCTGCGCATAC TGGGTTACTCCATCACGGGCCACGTGCGCGAGGAGATCATCGTATTCCTT CTAGGCCGCAGCGCGCGCAACGGCAAGGGCATCATCGAGAGCCTGCTGCA GCAGGTTCTCGGCTGCATGTTCTACCAGGCGCCGCAGAGCTTTCTGACGG CATGCAAGGCGGTGTCGGCGGGTGCCGCGTCGTCGCACATGATGGCGCTA CGCGGTGCGCGCGTGGTCCACCTCGACGAGCTACCGGCGGGCGTTGCGTT GGACGCGCAGATGATCAAGTACATCAGCGGCGGTGCCGACATCTCGGGGC GAGAGCTGTTTGGCACGCAGACGTCGTTTAGCCCAACGGCAGTTCCGTGG GCCAACACCAACGAGATGCCAGTCATCAAGGCGGAGCCGGCGATAATGCA ACGCATTGAGATCATCCCCTGCGATGCCAAGTTTCGCACGCCCGGGGATG CCAAGTTCCCCTATGACGCCAATGATAAGACACACTTCATCAAGAACACC AAACTGCGCGAAAACCTGCCCGTGGAGGCGTTCCTGGCAGTGGTGGTGCA GGCGGCCAAGAGGTGGTACGAGGGTGGGCTGGGGGAGAAACCGGCTTGCT GCAAGCTGGCATGCGACGCTTTTGCCGCCGAAAACGACACGCTGCAAAGC TGGATCAACGACGAGTGTGAGCTGGGACCCAGGGAGGGCGTCGATCCGGC GCTCATCTTGTGCAGCAGCGCATTCAGCGGTTACAACAACTACCGCGCGC GCCAGGAGCCGGCGCAACCGCCAATCAAGAAACGCGACATGCACGAGCAG ACGGCGGCCAAGGGGTTTGCCAGCACGCTGCTGCATGGGCGCGCAGCATA CGCCCGAAAATGCAGTCTCTCGCCTATGCCTCAAGCTCAGCAATCAAGGC GCAGTTGCCAGCAGAGCTGGCACTGCTGA
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Coding sequence (CDS) from alignment at Contig_31:699164..700342-

>mRNA_7418 ID=mRNA_7418|Name=jgi.p|Trimin1|164463|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1179bp|location=Sequence derived from alignment at Contig_31:699164..700342- (Tribonema minus UTEX_B_3156 )
GACGAGGATTTTGAAAAGCTACTTGACGTCAACAAGGACATCTTCAGCTG
CCAAAACGGCGTGGTGGAGCTGGCCACTGCCACGCTTCGCCCGCGCGTGC
GGAAGGACATGCTGACCCGTGCAGTTGACATCGACTACAATGCTGACTCG
CCGCGCATCCCTGAAGTTATGCAGCTTCTGACCGACATCACCCTCGCCGC
GCCGAATCGCCTCAACCGCCCAGCGCTGCTGGAGCGTCTGCTGCGCATAC
TGGGTTACTCCATCACGGGCCACGTGCGCGAGGAGATCATCGTATTCCTT
CTAGGCCGCAGCGCGCGCAACGGCAAGGGCATCATCGAGAGCCTGCTGCA
GCAGGTTCTCGGCTGCATGTTCTACCAGGCGCCGCAGAGCTTTCTGACGG
CATGCAAGGCGGTGTCGGCGGGTGCCGCGTCGTCGCACATGATGGCGCTA
CGCGGTGCGCGCGTGGTCCACCTCGACGAGCTACCGGCGGGCGTTGCGTT
GGACGCGCAGATGATCAAGTACATCAGCGGCGGTGCCGACATCTCGGGGC
GAGAGCTGTTTGGCACGCAGACGTCGTTTAGCCCAACGGCAGTTCCGTGG
GCCAACACCAACGAGATGCCAGTCATCAAGGCGGAGCCGGCGATAATGCA
ACGCATTGAGATCATCCCCTGCGATGCCAAGTTTCGCACGCCCGGGGATG
CCAAGTTCCCCTATGACGCCAATGATAAGACACACTTCATCAAGAACACC
AAACTGCGCGAAAACCTGCCCGTGGAGGCGTTCCTGGCAGTGGTGGTGCA
GGCGGCCAAGAGGTGGTACGAGGGTGGGCTGGGGGAGAAACCGGCTTGCT
GCAAGCTGGCATGCGACGCTTTTGCCGCCGAAAACGACACGCTGCAAAGC
TGGATCAACGACGAGTGTGAGCTGGGACCCAGGGAGGGCGTCGATCCGGC
GCTCATCTTGTGCAGCAGCGCATTCAGCGGTTACAACAACTACCGCGCGC
GCCAGGAGCCGGCGCAACCGCCAATCAAGAAACGCGACATGCACGAGCAG
ACGGCGGCCAAGGGGTTTGCCAGCACGCTGCTGCATGGGCGCGCAGCATA
CGCCCGAAAATGCAGTCTCTCGCCTATGCCTCAAGCTCAGCAATCAAGGC
GCAGTTGCCAGCAGAGCTGGCACTGCTGA
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